Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g148520 Pisum sativum HOM05D005338 ORTHO05D006550 3.8e-120 434.9 225 100.0
Medtr2g438770 Medicago truncatula HOM05D005338 ORTHO05D006550 2.5e-103 379.0 223 87.4
Glyma.15G160500 Glycine max HOM05D005338 ORTHO05D006550 1.7e-99 366.3 223 83.9
Glyma.09G054300 Glycine max HOM05D005338 ORTHO05D006550 6.4e-99 364.4 223 83.9
VMungo1215G3044 Vigna mungo HOM05D005338 ORTHO05D006550 6.4e-99 364.4 223 84.3
CiPaw.15G069200 Carya illinoinensis HOM05D005338 ORTHO05D006550 2.4e-98 362.5 223 82.1
Cfa002226 Carpinus fangiana HOM05D005338 ORTHO05D006550 5.4e-98 361.3 223 82.1
Phvul.009G240644 Phaseolus vulgaris HOM05D005338 ORTHO05D006550 1.6e-97 359.8 223 83.0
QL02p007082 Quercus lobata HOM05D005338 ORTHO05D006550 4.6e-97 358.2 223 81.6
TPR.G29215 Trifolium pratense HOM05D005338 ORTHO05D006550 4.6e-97 358.2 212 87.3
arahy.Tifrunner.gnm1.ann1.82M2ZV Arachis hypogaea HOM05D005338 ORTHO05D006550 5.9e-97 357.8 223 81.6
arahy.Tifrunner.gnm1.ann1.F09FAE Arachis hypogaea HOM05D005338 ORTHO05D006550 5.9e-97 357.8 223 81.6
arahy.Tifrunner.gnm1.ann1.N4382H Arachis hypogaea HOM05D005338 ORTHO05D006550 5.9e-97 357.8 223 81.6
arahy.Tifrunner.gnm1.ann1.VZ94AI Arachis hypogaea HOM05D005338 ORTHO05D006550 5.9e-97 357.8 223 81.6
Lalb_Chr15g0083931 Lupinus albus HOM05D005338 ORTHO05D006550 5.9e-97 357.8 217 84.3
Cfa018461 Carpinus fangiana HOM05D005338 ORTHO05D006550 7.8e-97 357.5 221 82.4
Lj4g0021487 Lotus japonicus HOM05D005338 ORTHO05D006550 1.3e-96 356.7 223 82.5
Migut.H00565 Erythranthe guttata HOM05D005338 ORTHO05D006550 2.3e-96 355.9 223 80.7
MBI01_g22964_MAGBIO Magnolia biondii HOM05D005338 ORTHO05D006550 3.9e-96 355.1 223 81.2
Hma1.2p1_0471F.1_g159310 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 5.0e-96 354.8 223 81.2
SGA_v2.0_scaffold4G02341 Striga asiatica HOM05D005338 ORTHO05D006550 5.0e-96 354.8 223 81.6
CSS0015965 Camellia sinensis var. sinensis HOM05D005338 ORTHO05D006550 8.6e-96 354.0 223 80.7
Medtr5g044730 Medicago truncatula HOM05D005338 ORTHO05D006550 8.6e-96 354.0 212 85.8
CANSAT25G1955 Cannabis sativa HOM05D005338 ORTHO05D006550 1.1e-95 353.6 223 80.7
VMungo1309G1758 Vigna mungo HOM05D005338 ORTHO05D006550 1.1e-95 353.6 223 81.2
Sed0010775 Sechium edule HOM05D005338 ORTHO05D006550 1.5e-95 353.2 223 78.0
TWI74G1059 Tripterygium wilfordii HOM05D005338 ORTHO05D006550 1.9e-95 352.8 223 80.3
ClCG08G015430 Citrullus lanatus HOM05D005338 ORTHO05D006550 2.5e-95 352.4 223 78.0
CsaV3_2G028360 Cucumis sativus L. HOM05D005338 ORTHO05D006550 2.5e-95 352.4 223 78.0
Glyma.18G135700 Glycine max HOM05D005338 ORTHO05D006550 2.5e-95 352.4 223 81.6
Gohir.D03G039200 Gossypium hirsutum HOM05D005338 ORTHO05D006550 3.3e-95 352.1 223 80.3
Actinidia15288 Actinidia chinensis HOM05D005338 ORTHO05D006550 4.3e-95 351.7 223 80.3
GSVIVG01009622001 Vitis vinifera HOM05D005338 ORTHO05D006550 5.6e-95 351.3 221 81.0
Gohir.A02G128500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 9.5e-95 350.5 223 79.8
Gorai.003G040400 Gossypium raimondii HOM05D005338 ORTHO05D006550 9.5e-95 350.5 223 79.8
Cpa.g.sc337.5 Carica papaya HOM05D005338 ORTHO05D006550 1.2e-94 350.1 223 79.4
MSTRG.2958 Avicennia marina HOM05D005338 ORTHO05D006550 1.6e-94 349.7 223 79.8
Duzib147G0908 Durio zibethinus HOM05D005338 ORTHO05D006550 2.8e-94 349.0 223 79.8
Nitab4.5_0000154g0040 Nicotiana tabacum HOM05D005338 ORTHO05D006550 2.8e-94 349.0 223 78.5
Gorai.007G236400 Gossypium raimondii HOM05D005338 ORTHO05D006550 3.6e-94 348.6 217 81.6
Nn8g40744 Nelumbo nucifera HOM05D005338 ORTHO05D006550 4.7e-94 348.2 223 79.4
Nitab4.5_0003384g0030 Nicotiana tabacum HOM05D005338 ORTHO05D006550 6.2e-94 347.8 223 78.5
Oeu012884.1 Olea europaea HOM05D005338 ORTHO05D006550 6.2e-94 347.8 223 79.4
CARHR113580 Cardamine hirsuta HOM05D005338 ORTHO05D006550 1.0e-93 347.1 223 78.5
CANSAT56G3114 Cannabis sativa HOM05D005338 ORTHO05D006550 1.4e-93 346.7 223 78.5
Cc07_g04760 Coffea canephora HOM05D005338 ORTHO05D006550 1.4e-93 346.7 223 78.5
Prupe.1G517500 Prunus persica HOM05D005338 ORTHO05D006550 1.8e-93 346.3 223 78.0
ECA247G2066 Erigeron canadensis HOM05D005338 ORTHO05D006550 3.1e-93 345.5 221 78.7
Gohir.A11G203500 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.0e-93 345.1 223 78.5
Prupe.1G518900 Prunus persica HOM05D005338 ORTHO05D006550 6.8e-93 344.4 223 77.6
Ciclev10026443m.g Citrus clementina HOM05D005338 ORTHO05D006550 1.2e-92 343.6 217 80.2
THA.LOC104824882 Tarenaya hassleriana HOM05D005338 ORTHO05D006550 1.2e-92 343.6 223 78.5
DCAR_003287 Daucus carota HOM05D005338 ORTHO05D006550 2.0e-92 342.8 223 79.4
CAN.G162.113 Capsicum annuum HOM05D005338 ORTHO05D006550 9.8e-92 340.5 221 77.8
PGR083G0298 Punica granatum HOM05D005338 ORTHO05D006550 9.8e-92 340.5 223 76.7
Eucgr.F01508 Eucalyptus grandis HOM05D005338 ORTHO05D006550 1.7e-91 339.7 223 77.1
Manes.13G095300 Manihot esculenta HOM05D005338 ORTHO05D006550 1.7e-91 339.7 225 79.1
SalBow1G1006 Salvia bowleyana HOM05D000168 ORTHO05D006550 1.7e-91 339.7 223 77.1
AT2G22370 Arabidopsis thaliana HOM05D005338 ORTHO05D006550 4.9e-91 338.2 223 75.8
COL.COLO4_27273 Corchorus olitorius HOM05D005338 ORTHO05D006550 4.9e-91 338.2 223 78.0
Thecc.01G098200 Theobroma cacao HOM05D005338 ORTHO05D006550 4.9e-91 338.2 223 77.6
Thhalv10000318m.g Eutrema salsugineum HOM05D005338 ORTHO05D006550 6.4e-91 337.8 223 75.8
FAN04G2403 Fragaria x ananassa HOM05D005338 ORTHO05D006550 6.4e-91 337.8 220 76.8
Solyc06g008010.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 6.4e-91 337.8 221 77.4
RcHm_v2.0_Chr5g0038311 Rosa chinensis HOM05D005338 ORTHO05D006550 1.1e-90 337.0 223 75.8
PGSC0003DMG400014704 Solanum tuberosum HOM05D005338 ORTHO05D006550 1.1e-90 337.0 221 76.9
Sopen06g002850 Solanum pennellii HOM05D005338 ORTHO05D006550 1.4e-90 336.7 221 76.9
AL4G11870 Arabidopsis lyrata HOM05D005338 ORTHO05D006550 1.9e-90 336.3 223 75.8
FvH4_5g37300 Fragaria vesca HOM05D005338 ORTHO05D006550 1.9e-90 336.3 221 76.0
FAN08G1597 Fragaria x ananassa HOM05D005338 ORTHO05D006550 5.4e-90 334.7 221 75.6
EL10Ac3g06218 Beta vulgaris HOM05D005338 ORTHO05D006550 7.8e-89 330.9 221 75.1
vmacro21598 Vaccinium macrocarpon HOM05D005338 ORTHO05D006550 7.8e-89 330.9 212 79.7
Carub.0004s0155 Capsella rubella HOM05D005338 ORTHO05D006550 1.7e-88 329.7 223 74.4
HanXRQChr04g0104391 Helianthus annuus HOM05D005338 ORTHO05D006550 5.0e-88 328.2 224 75.4
Lsat_1_v5_gn_1_19481 Lactuca sativa HOM05D005338 ORTHO05D006550 1.1e-87 327.0 210 81.4
Haze_25403 Corylus avellana HOM05D005338 ORTHO05D006550 1.9e-87 326.2 299 61.9
PSO017G6030 Papaver somniferum HOM05D005338 ORTHO05D006550 1.9e-87 326.2 223 73.5
Hund12454 Selenicereus undatus HOM05D005338 ORTHO05D006550 2.5e-87 325.9 212 76.9
Peaxi162Scf00479g00910 Petunia axillaris HOM05D005338 ORTHO05D006550 3.3e-87 325.5 211 78.2
Gohir.D11G220100 Gossypium hirsutum HOM05D005338 ORTHO05D006550 4.3e-87 325.1 214 77.1
BcaC02g08666 Brassica carinata HOM05D005338 ORTHO05D006550 5.6e-87 324.7 224 74.6
A04p16850 Brassica napus HOM05D005338 ORTHO05D006550 5.6e-87 324.7 224 74.6
BraA04t17318Z Brassica rapa HOM05D005338 ORTHO05D006550 5.6e-87 324.7 224 74.6
Aqoxy6G01960 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 7.3e-87 324.3 223 74.0
BcaC02g08711 Brassica carinata HOM05D005338 ORTHO05D006550 7.3e-87 324.3 224 74.6
C04p51430 Brassica napus HOM05D005338 ORTHO05D006550 7.3e-87 324.3 224 74.6
Aqoxy1G02678 Aquilegia oxysepala HOM05D005338 ORTHO05D006550 2.1e-86 322.8 223 74.0
PSO170G4003 Papaver somniferum HOM05D005338 ORTHO05D006550 2.8e-86 322.4 223 73.1
FAN13G0739 Fragaria x ananassa HOM05D005338 ORTHO05D006550 4.7e-86 321.6 209 76.1
BolC4t26735H Brassica oleracea HOM05D005338 ORTHO05D006550 6.2e-86 321.2 224 74.1
Potri.007G095300 Populus trichocarpa HOM05D005338 ORTHO05D006550 8.1e-86 320.9 223 74.9
FAN18G4080 Fragaria x ananassa HOM05D005338 ORTHO05D006550 1.4e-85 320.1 208 76.0
unitig_744.g23988 Utricularia gibba HOM05D005338 ORTHO05D006550 1.4e-85 320.1 221 76.5
MD15G1369800 Malus domestica HOM05D005338 ORTHO05D006550 6.8e-85 317.8 226 72.1
ATR0767G114 Amborella trichopoda HOM05D005338 ORTHO05D006550 1.5e-84 316.6 223 72.2
Dinv36026 Davidia involucrata HOM05D005338 ORTHO05D006550 2.4e-82 309.3 221 73.3
Sopen03g010490 Solanum pennellii HOM05D005338 ORTHO05D006550 3.2e-82 308.9 221 70.6
HPP92_021909 Vanilla planifolia HOM05D005338 ORTHO05D006550 4.1e-82 308.5 217 70.5
Sopen03g021660 Solanum pennellii HOM05D005338 ORTHO05D006550 9.2e-82 307.4 221 70.1
Zm00001eb236490 Zea mays HOM05D005338 ORTHO05D006550 9.2e-82 307.4 208 72.6
Sabra07G0078500 Salix brachista HOM05D005338 ORTHO05D006550 1.6e-81 306.6 216 72.2
Os02g0193900 Oryza sativa ssp. japonica HOM05D005338 ORTHO05D006550 2.7e-81 305.8 209 72.7
Sopen03g021630 Solanum pennellii HOM05D005338 ORTHO05D006550 6.0e-81 304.7 221 69.7
Sp4g01410 Schrenkiella parvula HOM05D005338 ORTHO05D006550 1.3e-80 303.5 223 69.1
CDE07G0352 Ceratophyllum demersum HOM05D005338 ORTHO05D006550 3.3e-79 298.9 202 74.8
Aa31LG7G14440 Aethionema arabicum HOM05D005338 ORTHO05D006550 6.2e-78 294.7 282 55.7
Ca_02026_v3 Cicer arietinum L. HOM05D005338 ORTHO05D006550 5.8e-76 288.1 170 85.3
Pp3c14_750 Physcomitrium patens HOM05D005338 ORTHO05D006550 3.9e-72 275.4 221 60.6
MELO3C010912.2 Cucumis melo HOM05D005338 ORTHO05D006550 1.9e-71 273.1 179 76.5
Rhsim06G0038600 Rhododendron simsii HOM05D005338 ORTHO05D006550 5.6e-71 271.6 191 74.3
SHI19279 Sapria himalayana HOM05D005338 ORTHO05D006550 1.2e-70 270.4 207 67.6
CAN.G176.23 Capsicum annuum HOM05D005338 ORTHO05D006550 4.7e-70 268.5 191 71.2
Lj4A782T79 Lonicera japonica HOM05D005338 ORTHO05D006550 1.4e-69 266.9 178 75.3
Mapoly0023s0045 Marchantia polymorpha HOM05D005338 ORTHO05D006550 1.7e-67 260.0 216 61.6
SMO236G0045 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 2.7e-65 252.7 216 59.3
SalBow1G1231 Salvia bowleyana HOM05D005338 ORTHO05D006550 6.4e-59 231.5 223 59.2
AagrBONN_evm.TU.Sc2ySwM_362.1720 Anthoceros agrestis HOM05D005338 ORTHO05D006550 4.2e-58 228.8 216 55.1
Solyc03g046360.3 Solanum lycopersicum HOM05D005338 ORTHO05D006550 1.0e-56 224.2 218 55.5
TAR628G0003 Trochodendron aralioides HOM05D005338 ORTHO05D006550 1.3e-54 217.2 150 74.7
RcHm_v2.0_Chr7g0238911 Rosa chinensis HOM05D005338 ORTHO05D006550 5.8e-52 208.4 179 63.7
Sc15g0006680 Simmondsia chinensis HOM05D005338 ORTHO05D006550 9.9e-52 207.6 150 72.7
AUR62040070 Chenopodium quinoa HOM05D005338 ORTHO05D006550 2.9e-51 206.1 145 71.0
Sopen00g011030 Solanum pennellii HOM05D005338 ORTHO05D006550 8.7e-48 194.5 221 50.2
Hma1.2p1_0023F.1_g015170 Hydrangea macrophylla HOM05D005338 ORTHO05D006550 2.5e-47 193.0 157 68.8
RcHm_v2.0_Chr7g0238871 Rosa chinensis HOM05D005338 ORTHO05D006550 4.8e-46 188.7 110 80.9
RcHm_v2.0_Chr5g0034471 Rosa chinensis HOM05D005338 ORTHO05D006550 7.9e-41 171.4 131 67.2
Sopen00g003620 Solanum pennellii HOM05D005338 ORTHO05D006550 6.7e-40 168.3 180 52.2
SMO236G0041 Selaginella moellendorffii HOM05D005338 ORTHO05D006550 4.3e-39 165.6 168 51.8
Sopen03g021680 Solanum pennellii HOM05D005338 ORTHO05D006550 1.0e-35 154.5 221 43.9
TPR.G5804 Trifolium pratense HOM05D005338 ORTHO05D006550 1.4e-34 150.6 93 82.8
RcHm_v2.0_Chr7g0238881 Rosa chinensis HOM05D005338 ORTHO05D006550 2.3e-32 143.3 90 80.0
Atru.chr1.3597 Acer truncatum HOM05D005338 ORTHO05D006550 1.7e-22 110.5 91 62.6
Atru.chr12.488 Acer truncatum HOM05D005338 ORTHO05D006550 7.9e-17 91.7 45 95.6
TAR628G1182 Trochodendron aralioides HOM05D005338 ORTHO05D006550 6.7e-16 88.6 46 87.0
SEGI_27973 Sequoiadendron giganteum HOM05D005338 ORTHO05D006550 2.6e-15 86.7 53 71.7
BraA09t41155Z Brassica rapa HOM05D005338 ORTHO05D006550 1.3e-14 84.3 65 69.2
BcaC04g23293 Brassica carinata HOM05D005338 ORTHO05D006550 6.3e-14 82.0 56 71.4
MD08G1183200 Malus domestica HOM05D005338 ORTHO05D006550 1.0e-11 74.7 88 47.7
C08p40830 Brassica napus HOM05D005338 ORTHO05D006550 2.3e-08 63.5 34 88.2
BolC8t51648H Brassica oleracea HOM05D005338 ORTHO05D006550 6.7e-08 62.0 34 88.2


User provided reference genes

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