Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g141560 Pisum sativum HOM05D006551 ORTHO05D008546 4.5e-85 317.8 149 100.0
Psat2g019160 Pisum sativum HOM05D006551 ORTHO05D008546 9.0e-09 64.3 49 61.2
Medtr2g027110 Medicago truncatula HOM05D006551 ORTHO05D008546 2.6e-08 62.8 43 65.1
Lj6g0027493 Lotus japonicus HOM05D006551 ORTHO05D008546 3.4e-08 62.4 43 65.1
Psat1g172360 Pisum sativum HOM05D006551 ORTHO05D008546 4.5e-08 62.0 41 70.7
Ca_00765_v3 Cicer arietinum L. HOM05D006551 ORTHO05D008546 9.9e-08 60.8 43 62.8
TPR.G17557 Trifolium pratense HOM05D006551 ORTHO05D008546 9.9e-08 60.8 43 62.8
Phvul.006G137400 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 1.3e-07 60.5 43 62.8
Glyma.09G014800 Glycine max HOM05D006551 ORTHO05D008546 2.9e-07 59.3 43 60.5
Phvul.006G137611 Phaseolus vulgaris HOM05D006551 ORTHO05D008546 2.9e-07 59.3 43 60.5
arahy.Tifrunner.gnm1.ann1.HFV92P Arachis hypogaea HOM05D006551 ORTHO05D008546 8.4e-07 57.8 50 54.0
arahy.Tifrunner.gnm1.ann1.TFI8LM Arachis hypogaea HOM05D006551 ORTHO05D008546 8.4e-07 57.8 50 54.0
QL05p067740 Quercus lobata HOM05D006551 ORTHO05D008546 1.1e-06 57.4 41 65.9
Atru.chr1.1073 Acer truncatum HOM05D006551 ORTHO05D008546 1.4e-06 57.0 43 60.5
CSS0008489 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.4e-06 57.0 41 63.4
CSS0047745 Camellia sinensis var. sinensis HOM05D006551 ORTHO05D008546 1.4e-06 57.0 41 63.4
Duzib160G0007 Durio zibethinus HOM05D006551 ORTHO05D008546 1.4e-06 57.0 44 59.1
Gohir.D10G007800 Gossypium hirsutum HOM05D006551 ORTHO05D008546 1.4e-06 57.0 44 59.1
Gorai.011G008500 Gossypium raimondii HOM05D006551 ORTHO05D008546 1.4e-06 57.0 44 59.1
TAR629G1611 Trochodendron aralioides HOM05D006551 ORTHO05D008546 1.4e-06 57.0 41 65.9
Carub.0004s0140 Capsella rubella HOM05D006551 ORTHO05D008546 1.9e-06 56.6 48 56.2
Hma1.2p1_1175F.1_g264060 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.9e-06 56.6 41 63.4
Hma1.2p1_1175F.1_g264070 Hydrangea macrophylla HOM05D006551 ORTHO05D008546 1.9e-06 56.6 41 63.4
SGA_v2.0_scaffold7G03692 Striga asiatica HOM05D006551 ORTHO05D008546 1.9e-06 56.6 50 52.0
Thecc.06G241400 Theobroma cacao HOM05D006551 ORTHO05D008546 1.9e-06 56.6 48 56.2
AL4G11740 Arabidopsis lyrata HOM05D006551 ORTHO05D008546 2.4e-06 56.2 48 56.2
Ciclev10016440m.g Citrus clementina HOM05D006551 ORTHO05D008546 2.4e-06 56.2 48 52.1
vmacro03605 Vaccinium macrocarpon HOM05D006551 ORTHO05D008546 2.4e-06 56.2 58 46.6
BcaB08g35054 Brassica carinata HOM05D006551 ORTHO05D008546 4.2e-06 55.5 48 56.2
Cpa.g.sc27.224 Carica papaya HOM05D006551 ORTHO05D008546 4.2e-06 55.5 41 61.0
SpUn1059_0010 Schrenkiella parvula HOM05D006551 ORTHO05D008546 4.2e-06 55.5 44 56.8
BcaC07g41084 Brassica carinata HOM05D006551 ORTHO05D008546 5.5e-06 55.1 41 63.4
BcaC07g41085 Brassica carinata HOM05D006551 ORTHO05D008546 5.5e-06 55.1 41 63.4
A09p57680 Brassica napus HOM05D006551 ORTHO05D008546 5.5e-06 55.1 48 56.2
C08p40880 Brassica napus HOM05D006551 ORTHO05D008546 5.5e-06 55.1 41 63.4
BolC8t51654H Brassica oleracea HOM05D006551 ORTHO05D008546 5.5e-06 55.1 41 63.4
AT2G22260 Arabidopsis thaliana HOM05D006551 ORTHO05D008546 7.1e-06 54.7 48 54.2
COL.COLO4_24721 Corchorus olitorius HOM05D001094 ORTHO05D001050 7.1e-06 54.7 114 35.1
Rhsim13G0140300 Rhododendron simsii HOM05D006551 ORTHO05D008546 7.1e-06 54.7 37 64.9
CAN.G1263.6 Capsicum annuum HOM05D006551 ORTHO05D008546 9.3e-06 54.3 41 61.0
ClCG01G021210 Citrullus lanatus HOM05D006551 ORTHO05D008546 9.3e-06 54.3 41 58.5
Nn1g07524 Nelumbo nucifera HOM05D006551 ORTHO05D008546 9.3e-06 54.3 42 64.3
Nitab4.5_0000147g0330 Nicotiana tabacum HOM05D006551 ORTHO05D008546 9.3e-06 54.3 41 61.0
Solyc12g056880.2 Solanum lycopersicum HOM05D006551 ORTHO05D008546 9.3e-06 54.3 45 53.3
PGSC0003DMG400015008 Solanum tuberosum HOM05D006551 ORTHO05D008546 9.3e-06 54.3 41 61.0


User provided reference genes

Program Settings