Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g077920 Pisum sativum HOM05D002279 ORTHO05D002644 3.2e-130 468.4 234 100.0
Psat1g078680 Pisum sativum HOM05D002279 ORTHO05D002644 3.2e-130 468.4 234 100.0
Medtr7g098430 Medicago truncatula HOM05D002279 ORTHO05D002644 4.5e-79 298.5 180 86.1
TPR.G20054 Trifolium pratense HOM05D002279 ORTHO05D002644 8.4e-78 294.3 178 86.5
Glyma.03G167000 Glycine max HOM05D002279 ORTHO05D002644 2.5e-74 282.7 175 82.9
Ca_08738_v3 Cicer arietinum L. HOM05D002279 ORTHO05D002644 7.4e-74 281.2 178 83.1
Phvul.001G164500 Phaseolus vulgaris HOM05D002279 ORTHO05D002644 1.3e-73 280.4 178 80.9
Lj1g0017598 Lotus japonicus HOM05D002279 ORTHO05D002644 1.4e-72 276.9 179 79.9
Glyma.19G168100 Glycine max HOM05D002279 ORTHO05D002644 3.1e-72 275.8 181 79.0
arahy.Tifrunner.gnm1.ann1.CGPP17 Arachis hypogaea HOM05D002279 ORTHO05D002644 5.8e-71 271.6 173 78.0
arahy.Tifrunner.gnm1.ann1.UG1CCZ Arachis hypogaea HOM05D002279 ORTHO05D002644 5.8e-71 271.6 173 78.0
Lalb_Chr01g0019501 Lupinus albus HOM05D002279 ORTHO05D002644 5.5e-69 265.0 178 76.4
Lalb_Chr20g0113641 Lupinus albus HOM05D002279 ORTHO05D002644 1.5e-66 256.9 175 73.7
VMungo1383G2023 Vigna mungo HOM05D002279 ORTHO05D002644 1.8e-64 250.0 157 80.9
Psat3g055080 Pisum sativum HOM05D002279 ORTHO05D002644 9.0e-64 247.7 124 96.0
QL09p041332 Quercus lobata HOM05D002279 ORTHO05D002644 2.1e-60 236.5 179 68.2
CiPaw.03G270500 Carya illinoinensis HOM05D002279 ORTHO05D002644 7.9e-60 234.6 177 66.1
Dinv34672 Davidia involucrata HOM05D002279 ORTHO05D002644 4.3e-58 228.8 181 64.6
GSVIVG01028423001 Vitis vinifera HOM05D002279 ORTHO05D002644 1.8e-56 223.4 170 66.5
CiPaw.04G190300 Carya illinoinensis HOM05D002279 ORTHO05D002644 1.2e-55 220.7 184 64.1
Duzib211G0092 Durio zibethinus HOM05D002279 ORTHO05D002644 2.6e-55 219.5 171 65.5
Cfa002480 Carpinus fangiana HOM05D002279 ORTHO05D002644 3.4e-55 219.2 172 65.1
Thecc.01G250900 Theobroma cacao HOM05D002279 ORTHO05D002644 1.0e-54 217.6 175 65.1
Manes.13G040100 Manihot esculenta HOM05D002279 ORTHO05D002644 2.1e-52 209.9 179 63.1
TWI12G1034 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 2.1e-52 209.9 177 59.9
Atru.chr5.1840 Acer truncatum HOM05D002279 ORTHO05D002644 1.8e-51 206.8 179 60.3
Gorai.007G149700 Gossypium raimondii HOM05D002279 ORTHO05D002644 5.1e-51 205.3 171 60.8
Gohir.D11G139400 Gossypium hirsutum HOM05D002279 ORTHO05D002644 3.3e-50 202.6 171 60.2
Nitab4.5_0000845g0220 Nicotiana tabacum HOM05D002279 ORTHO05D002644 3.3e-50 202.6 177 61.6
Prupe.8G215900 Prunus persica HOM05D002279 ORTHO05D002644 5.7e-50 201.8 177 60.5
Sabra02G0195500 Salix brachista HOM05D002279 ORTHO05D002644 5.7e-50 201.8 200 56.0
Nitab4.5_0007760g0020 Nicotiana tabacum HOM05D002279 ORTHO05D002644 1.1e-48 197.6 177 60.5
Gohir.A11G133300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 2.4e-48 196.4 171 59.6
TAR365G0294 Trochodendron aralioides HOM05D002279 ORTHO05D002644 5.3e-48 195.3 177 58.2
Duzib133G0328 Durio zibethinus HOM05D002279 ORTHO05D002644 6.9e-48 194.9 155 64.5
TWI18G0730 Tripterygium wilfordii HOM05D002279 ORTHO05D002644 6.9e-48 194.9 177 55.9
Dinv16397 Davidia involucrata HOM05D002279 ORTHO05D002644 2.0e-47 193.4 175 59.4
Lj2A1143T49 Lonicera japonica HOM05D002279 ORTHO05D002644 5.9e-47 191.8 187 57.8
PSO017G4536 Papaver somniferum HOM05D002279 ORTHO05D002644 3.8e-46 189.1 179 59.8
PSO063G2201 Papaver somniferum HOM05D002279 ORTHO05D002644 6.5e-46 188.3 179 59.2
VMungo0647G0533 Vigna mungo HOM05D002279 ORTHO05D027816 6.5e-46 188.3 123 75.6
Actinidia37548 Actinidia chinensis HOM05D002279 ORTHO05D002644 8.5e-46 188.0 183 57.9
Cpa.g.sc87.24 Carica papaya HOM05D002279 ORTHO05D002644 8.5e-46 188.0 176 58.5
Aqoxy2G03747 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 1.1e-45 187.6 172 58.1
Thhalv10006844m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 1.1e-45 187.6 176 55.1
Gohir.D07G158300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 3.2e-45 186.0 184 57.1
Gohir.A07G204300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.6e-44 183.7 180 57.2
TAR636G1664 Trochodendron aralioides HOM05D002279 ORTHO05D002644 2.1e-44 183.3 177 56.5
CAN.G536.17 Capsicum annuum HOM05D002279 ORTHO05D002644 2.7e-44 183.0 178 57.9
Gorai.001G181500 Gossypium raimondii HOM05D002279 ORTHO05D002644 1.0e-43 181.0 182 57.1
Gorai.001G237700 Gossypium raimondii HOM05D002279 ORTHO05D002644 1.0e-43 181.0 179 57.0
Gohir.D07G210300 Gossypium hirsutum HOM05D002279 ORTHO05D002644 1.8e-43 180.3 179 57.0
MD00G1060100 Malus domestica HOM05D002279 ORTHO05D002644 6.7e-43 178.3 178 56.7
THA.LOC104816099 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 6.7e-43 178.3 163 57.1
Actinidia23696 Actinidia chinensis HOM05D002279 ORTHO05D002644 8.8e-43 177.9 176 53.4
A08p37110 Brassica napus HOM05D002279 ORTHO05D002644 1.1e-42 177.6 166 57.2
Nn3g19779 Nelumbo nucifera HOM05D002279 ORTHO05D002644 1.5e-42 177.2 182 52.2
Carub.0001s0323 Capsella rubella HOM05D002279 ORTHO05D002644 2.6e-42 176.4 176 53.4
Oeu015430.1 Olea europaea HOM05D002279 ORTHO05D002644 7.4e-42 174.9 160 56.9
Oeu052078.1 Olea europaea HOM05D002279 ORTHO05D002644 7.4e-42 174.9 177 54.2
Actinidia30129 Actinidia chinensis HOM05D002279 ORTHO05D002644 2.2e-41 173.3 164 56.1
Aqoxy7G02303 Aquilegia oxysepala HOM05D002279 ORTHO05D002644 2.2e-41 173.3 173 55.5
C08p00900 Brassica napus HOM05D002279 ORTHO05D002644 2.8e-41 172.9 183 54.1
Hund05483 Selenicereus undatus HOM05D002279 ORTHO05D002644 2.8e-41 172.9 182 55.5
Potri.002G257100 Populus trichocarpa HOM05D002279 ORTHO05D002644 3.7e-41 172.6 149 61.1
Ciclev10018866m.g Citrus clementina HOM05D002279 ORTHO05D002644 1.1e-40 171.0 181 52.5
Cc01_g17830 Coffea canephora HOM05D002279 ORTHO05D002644 1.4e-40 170.6 179 54.7
FAN27G1575 Fragaria x ananassa HOM05D002279 ORTHO05D002644 1.4e-40 170.6 153 62.7
SGA_v2.0_scaffold138G35188 Striga asiatica HOM05D002279 ORTHO05D002644 3.1e-40 169.5 182 53.8
MELO3C022388.2 Cucumis melo HOM05D002279 ORTHO05D002644 1.2e-39 167.5 147 61.2
CsaV3_6G007400 Cucumis sativus L. HOM05D002279 ORTHO05D002644 1.2e-39 167.5 147 61.2
FvH4_2g20550 Fragaria vesca HOM05D002279 ORTHO05D002644 1.2e-39 167.5 153 62.1
FAN24G2116 Fragaria x ananassa HOM05D002279 ORTHO05D002644 1.2e-39 167.5 153 62.1
Sopen09g025760 Solanum pennellii HOM05D002279 ORTHO05D002644 5.9e-39 165.2 176 54.5
Hma1.2p1_0273F.1_g109230 Hydrangea macrophylla HOM05D002279 ORTHO05D002644 3.8e-38 162.5 214 47.7
Aa31LG1G20760 Aethionema arabicum HOM05D002279 ORTHO05D002644 5.0e-38 162.2 163 55.2
BolC8t46891H Brassica oleracea HOM05D002279 ORTHO05D002644 6.5e-38 161.8 187 50.8
BraA08t35610Z Brassica rapa HOM05D002279 ORTHO05D002644 6.5e-38 161.8 151 55.6
MD05G1189300 Malus domestica HOM05D002279 ORTHO05D002644 6.5e-38 161.8 154 57.1
CARHR003420 Cardamine hirsuta HOM05D002279 ORTHO05D002644 8.5e-38 161.4 150 52.7
AT1G04080 Arabidopsis thaliana HOM05D002279 ORTHO05D002644 1.1e-37 161.0 150 55.3
Migut.D00473 Erythranthe guttata HOM05D002279 ORTHO05D002644 1.1e-37 161.0 179 53.1
MBI10_g26043_MAGBIO Magnolia biondii HOM05D002279 ORTHO05D002644 1.1e-37 161.0 158 55.7
CANSAT01G3007 Cannabis sativa HOM05D002279 ORTHO05D002644 2.5e-37 159.8 153 61.4
VMungo0464G1959 Vigna mungo HOM05D002279 ORTHO05D027816 7.2e-37 158.3 102 75.5
Lsat_1_v5_gn_5_181380 Lactuca sativa HOM05D002279 ORTHO05D002644 1.2e-36 157.5 178 50.0
RcHm_v2.0_Chr6g0286711 Rosa chinensis HOM05D002279 ORTHO05D002644 3.6e-36 156.0 152 59.9
Peaxi162Scf00043g02923 Petunia axillaris HOM05D002279 ORTHO05D002644 1.0e-35 154.5 162 53.1
unitig_8.g3073 Utricularia gibba HOM05D002279 ORTHO05D002644 1.0e-35 154.5 175 50.3
Lj1C73G6 Lonicera japonica HOM05D002279 ORTHO05D002644 2.3e-35 153.3 155 54.2
SGA_v2.0_scaffold1G00650 Striga asiatica HOM05D002279 ORTHO05D002644 2.3e-35 153.3 180 51.1
AL1G13680 Arabidopsis lyrata HOM05D002279 ORTHO05D002644 3.9e-35 152.5 150 51.3
DCAR_004690 Daucus carota HOM05D002279 ORTHO05D002644 3.9e-35 152.5 174 51.7
PGR119G1284 Punica granatum HOM05D002279 ORTHO05D002644 6.7e-35 151.8 177 54.8
THA.LOC104826051 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 8.8e-35 151.4 175 52.0
Sp1g02900 Schrenkiella parvula HOM05D002279 ORTHO05D002644 1.5e-34 150.6 150 52.7
Sed0023704 Sechium edule HOM05D002279 ORTHO05D002644 4.4e-34 149.1 124 62.9
unitig_22.g6301 Utricularia gibba HOM05D002279 ORTHO05D002644 7.4e-34 148.3 172 51.7
Hma1.2p1_1930F.1_g307920 Hydrangea macrophylla HOM05D002279 ORTHO05D002644 8.2e-33 144.8 122 60.7
CSS0038534 Camellia sinensis var. sinensis HOM05D002279 ORTHO05D002644 1.8e-32 143.7 172 51.7
ClCG06G001450 Citrullus lanatus HOM05D002279 ORTHO05D002644 7.0e-32 141.7 114 63.2
MBI07_g23231_MAGBIO Magnolia biondii HOM05D002279 ORTHO05D002644 1.6e-31 140.6 126 61.1
BraA10t42523Z Brassica rapa HOM05D002279 ORTHO05D002644 5.9e-31 138.7 184 48.4
Potri.014G192800 Populus trichocarpa HOM05D002279 ORTHO05D002644 1.0e-30 137.9 114 60.5
C05p02340 Brassica napus HOM05D002279 ORTHO05D002644 1.3e-30 137.5 150 52.7
AUR62008790 Chenopodium quinoa HOM05D002279 ORTHO05D002644 1.7e-30 137.1 173 46.8
BcaC05g24473 Brassica carinata HOM05D002279 ORTHO05D002644 2.2e-30 136.7 150 53.3
Atru.chr1.1182 Acer truncatum HOM05D002279 ORTHO05D002644 2.9e-30 136.3 144 52.1
HPP92_021812 Vanilla planifolia HOM05D002279 ORTHO05D002644 6.5e-30 135.2 167 47.9
BolC5t29013H Brassica oleracea HOM05D002279 ORTHO05D002644 8.5e-30 134.8 150 52.7
AUR62025445 Chenopodium quinoa HOM05D002279 ORTHO05D002644 1.1e-29 134.4 161 49.1
Aa31LG5G3310 Aethionema arabicum HOM05D002279 ORTHO05D002644 1.9e-29 133.7 162 46.3
SEGI_33332 Sequoiadendron giganteum HOM05D002279 ORTHO05D002644 1.9e-29 133.7 190 44.7
ECA248G1198 Erigeron canadensis HOM05D002279 ORTHO05D002644 4.2e-29 132.5 148 49.3
HPP92_019939 Vanilla planifolia HOM05D002279 ORTHO05D002644 4.2e-29 132.5 178 47.8
A10p02540 Brassica napus HOM05D002279 ORTHO05D002644 7.2e-29 131.7 182 47.8
EL10Ac7g17680 Beta vulgaris HOM05D002279 ORTHO05D002644 9.4e-29 131.3 174 47.1
Nn1g02962 Nelumbo nucifera HOM05D002279 ORTHO05D002644 1.0e-27 127.9 150 47.3
Os03g0210400 Oryza sativa ssp. japonica HOM05D002279 ORTHO05D002644 1.0e-27 127.9 170 46.5
Sc24g0003670 Simmondsia chinensis HOM05D002279 ORTHO05D002644 1.0e-27 127.9 171 47.4
VMungo1080G0391 Vigna mungo HOM05D002279 ORTHO05D002644 2.3e-27 126.7 89 73.0
ATR0787G201 Amborella trichopoda HOM05D002279 ORTHO05D002644 5.2e-27 125.6 185 47.0
Ah.08g218250 Amaranthus hybridus HOM05D002279 ORTHO05D002644 8.8e-27 124.8 145 51.0
Eucgr.K01429 Eucalyptus grandis HOM05D002279 ORTHO05D002644 8.8e-27 124.8 175 44.6
Thhalv10003154m.g Eutrema salsugineum HOM05D002279 ORTHO05D002644 3.3e-26 122.9 142 47.9
CDE05G3533 Ceratophyllum demersum HOM05D002279 ORTHO05D002644 4.4e-26 122.5 183 42.1
Lsat_1_v5_gn_8_92021 Lactuca sativa HOM05D002279 ORTHO05D002644 4.4e-26 122.5 175 44.6
HanXRQChr01g0015001 Helianthus annuus HOM05D002279 ORTHO05D002644 4.8e-25 119.0 148 47.3
DCAR_004701 Daucus carota HOM05D002279 ORTHO05D002644 8.2e-25 118.2 175 47.4
vmacro14798 Vaccinium macrocarpon HOM05D002279 ORTHO05D002644 9.1e-24 114.8 185 43.2
BcaC07g36934 Brassica carinata HOM05D002279 ORTHO05D002644 3.0e-19 99.8 74 63.5
Gohir.A07G152100 Gossypium hirsutum HOM05D002279 ORTHO05D002644 5.2e-19 99.0 73 65.8
Psat4g171680 Pisum sativum HOM05D000050 ORTHO05D000654 4.4e-18 95.9 50 96.0
AagrBONN_evm.TU.Sc2ySwM_228.4011 Anthoceros agrestis HOM05D002279 ORTHO05D002644 2.2e-17 93.6 169 38.5
C05p33660 Brassica napus HOM05D002279 ORTHO05D027816 3.5e-15 86.3 123 45.5
BolC5t32097H Brassica oleracea HOM05D002279 ORTHO05D027816 4.5e-15 85.9 123 44.7
THA.LOC104801556 Tarenaya hassleriana HOM05D002279 ORTHO05D002644 8.6e-14 81.6 64 57.8
Sp2g08790 Schrenkiella parvula HOM05D002279 ORTHO05D002644 1.0e-11 74.7 163 35.0
Pp3c1_23160 Physcomitrium patens HOM05D002279 ORTHO05D002644 1.4e-11 74.3 175 32.6
Pp3c27_7380 Physcomitrium patens HOM05D002279 ORTHO05D002644 2.3e-11 73.6 181 34.8
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 1.5e-10 70.9 188 34.0
VMungo0540G0821 Vigna mungo HOM05D006161 ORTHO05D007483 6.3e-09 65.5 37 83.8
Pp3c2_14560 Physcomitrium patens HOM05D002279 ORTHO05D002644 8.3e-09 65.1 171 31.6
SMO356G0255 Selaginella moellendorffii HOM05D002279 ORTHO05D002644 3.8e-06 56.2 85 40.0
BcaB06g25433 Brassica carinata HOM05D002279 ORTHO05D002644 6.6e-06 55.5 91 40.7


User provided reference genes

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