Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g070560 Pisum sativum HOM05D003128 ORTHO05D004333 2.8e-137 491.9 242 100.0
Psat7g050400 Pisum sativum HOM05D003128 ORTHO05D004333 3.4e-114 415.2 213 96.7
Ca_17686_v3 Cicer arietinum L. HOM05D003128 ORTHO05D004333 2.3e-110 402.5 210 92.9
TPR.G2212 Trifolium pratense HOM05D003128 ORTHO05D004333 1.1e-109 400.2 210 92.9
Medtr8g092060 Medicago truncatula HOM05D003128 ORTHO05D004333 4.3e-109 398.3 210 92.9
Glyma.08G143000 Glycine max HOM05D003128 ORTHO05D004333 1.7e-105 386.3 210 89.5
Lj4g0009219 Lotus japonicus HOM05D003128 ORTHO05D004333 1.1e-104 383.6 210 88.6
Phvul.002G265804 Phaseolus vulgaris HOM05D003128 ORTHO05D004333 1.1e-104 383.6 210 89.0
Glyma.05G185000 Glycine max HOM05D003128 ORTHO05D004333 1.4e-104 383.3 210 89.0
Lalb_Chr12g0203461 Lupinus albus HOM05D003128 ORTHO05D004333 4.1e-104 381.7 210 89.0
Sabra07G0066500 Salix brachista HOM05D003128 ORTHO05D004333 4.6e-103 378.3 210 86.7
Potri.007G079300 Populus trichocarpa HOM05D003128 ORTHO05D004333 3.9e-102 375.2 210 86.7
MD10G1028600 Malus domestica HOM05D003128 ORTHO05D004333 5.1e-102 374.8 210 86.7
Prupe.6G169200 Prunus persica HOM05D003128 ORTHO05D004333 1.9e-101 372.9 210 87.1
Manes.12G143800 Manihot esculenta HOM05D003128 ORTHO05D004333 2.5e-101 372.5 210 86.2
RcHm_v2.0_Chr2g0117351 Rosa chinensis HOM05D003128 ORTHO05D004333 3.3e-101 372.1 210 86.7
GSVIVG01022250001 Vitis vinifera HOM05D003128 ORTHO05D004333 5.6e-101 371.3 210 86.2
FvH4_1g22910 Fragaria vesca HOM05D003128 ORTHO05D004333 1.6e-100 369.8 210 85.2
MD05G1028000 Malus domestica HOM05D003128 ORTHO05D004333 1.6e-100 369.8 210 86.7
Cc07_g16450 Coffea canephora HOM05D003128 ORTHO05D004333 2.1e-100 369.4 210 85.2
FAN26G0239 Fragaria x ananassa HOM05D003128 ORTHO05D004333 6.2e-100 367.9 210 84.8
Potri.005G085600 Populus trichocarpa HOM05D003128 ORTHO05D004333 6.2e-100 367.9 210 86.2
Dinv19469 Davidia involucrata HOM05D003128 ORTHO05D004333 1.8e-99 366.3 210 85.2
Medtr2g028030 Medicago truncatula HOM05D003128 ORTHO05D004333 2.3e-99 365.9 210 86.2
TWI75G1035 Tripterygium wilfordii HOM05D003128 ORTHO05D004333 2.3e-99 365.9 210 85.2
TAR376G0247 Trochodendron aralioides HOM05D003128 ORTHO05D004333 3.1e-99 365.5 210 85.2
Atru.chr4.452 Acer truncatum HOM05D003128 ORTHO05D004333 5.2e-99 364.8 210 85.7
Sabra05G0070500 Salix brachista HOM05D003128 ORTHO05D004333 5.2e-99 364.8 210 84.8
CSS0050242 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 8.9e-99 364.0 210 84.8
Thecc.01G115300 Theobroma cacao HOM05D003128 ORTHO05D004333 7.6e-98 360.9 212 84.9
Glyma.13G362700 Glycine max HOM05D003128 ORTHO05D004333 1.3e-97 360.1 210 84.3
CiPaw.04G090100 Carya illinoinensis HOM05D003128 ORTHO05D004333 4.9e-97 358.2 211 84.8
QL06p031715 Quercus lobata HOM05D003128 ORTHO05D004333 8.3e-97 357.5 210 83.3
Hund19633 Selenicereus undatus HOM05D003128 ORTHO05D004333 8.3e-97 357.5 210 83.8
COL.COLO4_10987 Corchorus olitorius HOM05D003128 ORTHO05D004333 1.4e-96 356.7 213 83.1
EL10Ac6g14775 Beta vulgaris HOM05D003128 ORTHO05D004333 1.9e-96 356.3 210 83.3
Duzib147G1643 Durio zibethinus HOM05D003128 ORTHO05D004333 2.4e-96 355.9 213 83.1
Ciclev10024790m.g Citrus clementina HOM05D003128 ORTHO05D004333 3.2e-96 355.5 210 82.9
Gohir.D12G093500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 4.1e-96 355.1 213 82.6
Gorai.008G101500 Gossypium raimondii HOM05D003128 ORTHO05D004333 4.1e-96 355.1 213 82.6
MELO3C007466.2 Cucumis melo HOM05D003128 ORTHO05D004333 5.4e-96 354.8 210 81.9
PGR102G2018 Punica granatum HOM05D003128 ORTHO05D004333 7.1e-96 354.4 210 82.9
Actinidia12215 Actinidia chinensis HOM05D003128 ORTHO05D004333 1.2e-95 353.6 210 82.4
CsaV3_6G042250 Cucumis sativus L. HOM05D003128 ORTHO05D004333 3.5e-95 352.1 210 81.9
Gohir.A12G092500 Gossypium hirsutum HOM05D003128 ORTHO05D004333 1.0e-94 350.5 213 81.7
Aqoxy6G00440 Aquilegia oxysepala HOM05D003128 ORTHO05D004333 3.0e-94 349.0 210 81.4
PSO541G0298 Papaver somniferum HOM05D003128 ORTHO05D004333 5.1e-94 348.2 212 81.6
PSO675G2461 Papaver somniferum HOM05D003128 ORTHO05D004333 5.1e-94 348.2 212 81.6
Sed0019648 Sechium edule HOM05D003128 ORTHO05D004333 8.6e-94 347.4 210 80.5
Eucgr.H04882 Eucalyptus grandis HOM05D003128 ORTHO05D004333 1.1e-93 347.1 210 81.0
Psat1g070640 Pisum sativum HOM05D003128 ORTHO05D004333 1.1e-93 347.1 172 98.3
SalBow5G4213 Salvia bowleyana HOM05D003128 ORTHO05D004333 1.5e-93 346.7 210 81.9
ECA238G0109 Erigeron canadensis HOM05D003128 ORTHO05D004333 1.9e-93 346.3 210 80.0
THA.LOC104819600 Tarenaya hassleriana HOM05D003128 ORTHO05D004333 2.5e-93 345.9 210 81.0
MSTRG.15756 Avicennia marina HOM05D003128 ORTHO05D004333 3.3e-93 345.5 210 81.4
SGA_v2.0_scaffold47G17695 Striga asiatica HOM05D003128 ORTHO05D004333 3.3e-93 345.5 210 81.0
DCAR_001378 Daucus carota HOM05D003128 ORTHO05D004333 4.3e-93 345.1 210 81.0
HanXRQChr16g0513231 Helianthus annuus HOM05D003128 ORTHO05D004333 4.3e-93 345.1 211 80.1
Lsat_1_v5_gn_8_13041 Lactuca sativa HOM05D003128 ORTHO05D004333 5.6e-93 344.7 212 79.2
CANSAT01G0023 Cannabis sativa HOM05D003128 ORTHO05D004333 7.3e-93 344.4 224 76.3
AUR62027168 Chenopodium quinoa HOM05D003128 ORTHO05D004333 7.3e-93 344.4 211 81.0
Aa31LG2G10270 Aethionema arabicum HOM05D003128 ORTHO05D004333 4.7e-92 341.7 210 78.6
CAN.G997.5 Capsicum annuum HOM05D003128 ORTHO05D004333 6.2e-92 341.3 210 79.5
Nitab4.5_0003588g0040 Nicotiana tabacum HOM05D003128 ORTHO05D004333 6.2e-92 341.3 210 79.0
TAR633G2583 Trochodendron aralioides HOM05D003128 ORTHO05D004333 6.2e-92 341.3 215 80.9
Ah.03g141630 Amaranthus hybridus HOM05D003128 ORTHO05D004333 8.1e-92 340.9 210 80.5
Nitab4.5_0001532g0050 Nicotiana tabacum HOM05D003128 ORTHO05D004333 8.1e-92 340.9 210 79.5
Nitab4.5_0000110g0210 Nicotiana tabacum HOM05D003128 ORTHO05D004333 1.8e-91 339.7 210 79.0
Peaxi162Scf00106g01318 Petunia axillaris HOM05D003128 ORTHO05D004333 3.1e-91 339.0 210 78.6
VMungo0251G0175 Vigna mungo HOM05D003128 ORTHO05D004333 4.0e-91 338.6 272 67.3
Cfa002768 Carpinus fangiana HOM05D003128 ORTHO05D004333 5.2e-91 338.2 211 81.0
Migut.L00061 Erythranthe guttata HOM05D003128 ORTHO05D004333 6.8e-91 337.8 210 79.0
SalBow1G7304 Salvia bowleyana HOM05D003128 ORTHO05D004333 6.8e-91 337.8 212 79.7
Thhalv10006661m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 1.2e-90 337.0 210 78.6
AL5G39590 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 1.5e-90 336.7 212 78.3
FAN19G0581 Fragaria x ananassa HOM05D003128 ORTHO05D004333 2.0e-90 336.3 192 84.9
CARHR010630 Cardamine hirsuta HOM05D003128 ORTHO05D004333 2.6e-90 335.9 210 78.6
Sp1g09120 Schrenkiella parvula HOM05D003128 ORTHO05D004333 2.6e-90 335.9 210 78.1
AL1G21290 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 4.4e-90 335.1 210 78.6
AT3G57940 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 4.4e-90 335.1 212 77.8
PGSC0003DMG400031195 Solanum tuberosum HOM05D003128 ORTHO05D004333 4.4e-90 335.1 210 77.6
CARHR168240 Cardamine hirsuta HOM05D003128 ORTHO05D004333 5.8e-90 334.7 210 77.1
AT1G10490 Arabidopsis thaliana HOM05D003128 ORTHO05D004333 7.6e-90 334.3 210 78.6
A09p50770 Brassica napus HOM05D003128 ORTHO05D004333 9.9e-90 334.0 210 77.6
BcaC07g38605 Brassica carinata HOM05D003128 ORTHO05D004333 1.3e-89 333.6 210 77.6
PSO017G2724 Papaver somniferum HOM05D003128 ORTHO05D004333 1.3e-89 333.6 211 79.1
A08p33940 Brassica napus HOM05D003128 ORTHO05D004333 1.7e-89 333.2 210 77.1
C08p13730 Brassica napus HOM05D003128 ORTHO05D004333 1.7e-89 333.2 210 77.6
BraA08t35308Z Brassica rapa HOM05D003128 ORTHO05D004333 1.7e-89 333.2 210 77.1
BraA09t40524Z Brassica rapa HOM05D003128 ORTHO05D004333 2.2e-89 332.8 210 77.6
Nn3g18602 Nelumbo nucifera HOM05D003128 ORTHO05D004333 2.2e-89 332.8 210 80.5
Oeu054942.1 Olea europaea HOM05D003128 ORTHO05D004333 2.2e-89 332.8 210 78.6
Zm00001eb344750 Zea mays HOM05D003128 ORTHO05D004333 2.2e-89 332.8 210 76.2
BcaC07g40165 Brassica carinata HOM05D003128 ORTHO05D004333 2.9e-89 332.4 219 74.9
Carub.0005s2478 Capsella rubella HOM05D003128 ORTHO05D004333 2.9e-89 332.4 211 77.7
Sp5g04780 Schrenkiella parvula HOM05D003128 ORTHO05D004333 2.9e-89 332.4 210 77.1
BolC8t49008H Brassica oleracea HOM05D003128 ORTHO05D004333 8.4e-89 330.9 210 77.1
Carub.0001s0992 Capsella rubella HOM05D003128 ORTHO05D004333 8.4e-89 330.9 210 76.7
C08p33490 Brassica napus HOM05D003128 ORTHO05D004333 1.9e-88 329.7 210 76.7
Thhalv10005765m.g Eutrema salsugineum HOM05D003128 ORTHO05D004333 4.2e-88 328.6 210 76.7
Solyc04g051670.3 Solanum lycopersicum HOM05D003128 ORTHO05D004333 1.2e-87 327.0 211 76.8
Sopen04g023030 Solanum pennellii HOM05D003128 ORTHO05D004333 2.7e-87 325.9 211 76.3
Aa31LG1G4460 Aethionema arabicum HOM05D003128 ORTHO05D004333 4.6e-87 325.1 221 74.7
CDE06G1969 Ceratophyllum demersum HOM05D003128 ORTHO05D004333 2.3e-86 322.8 224 70.1
SalBow5G3190 Salvia bowleyana HOM05D003128 ORTHO05D004333 5.1e-86 321.6 215 75.8
ClCG01G015970 Citrullus lanatus HOM05D003128 ORTHO05D004333 6.6e-86 321.2 191 82.2
HPP92_008448 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.1e-85 320.5 211 74.9
ATR1120G197 Amborella trichopoda HOM05D003128 ORTHO05D004333 2.8e-84 315.8 210 74.8
SalBow5G5535 Salvia bowleyana HOM05D003128 ORTHO05D004333 6.2e-84 314.7 228 72.4
CAN.G710.3 Capsicum annuum HOM05D003128 ORTHO05D004333 2.4e-83 312.8 210 76.2
HPP92_008449 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.1e-83 312.4 211 73.0
HPP92_027496 Vanilla planifolia HOM05D003128 ORTHO05D004333 3.1e-83 312.4 211 73.0
Rhsim08G0005200 Rhododendron simsii HOM05D003128 ORTHO05D004333 2.0e-82 309.7 334 52.4
ClCG03G016370 Citrullus lanatus HOM05D003128 ORTHO05D004333 4.4e-82 308.5 212 72.6
MELO3C015382.2 Cucumis melo HOM05D003128 ORTHO05D004333 5.8e-82 308.1 212 72.2
CSS0032353 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 9.9e-82 307.4 212 72.2
Os12g0170700 Oryza sativa ssp. japonica HOM05D003128 ORTHO05D004333 9.9e-82 307.4 190 78.9
CSS0015093 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.3e-81 307.0 212 73.1
Cc02_g23680 Coffea canephora HOM05D003128 ORTHO05D004333 6.4e-81 304.7 226 67.3
Mapoly0031s0153 Marchantia polymorpha HOM05D003128 ORTHO05D004333 6.4e-81 304.7 211 71.1
CsaV3_1G039600 Cucumis sativus L. HOM05D003128 ORTHO05D004333 1.4e-80 303.5 212 70.8
SMO364G0954 Selaginella moellendorffii HOM05D003128 ORTHO05D004333 3.2e-80 302.4 211 70.6
Sed0011569 Sechium edule HOM05D003128 ORTHO05D004333 7.9e-79 297.7 210 70.0
BcaC07g38567 Brassica carinata HOM05D003128 ORTHO05D004333 1.3e-78 297.0 191 75.9
Manes.01G261100 Manihot esculenta HOM05D003128 ORTHO05D004333 1.7e-78 296.6 210 68.6
vmacro18643 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 2.3e-78 296.2 342 51.2
Sed0015537 Sechium edule HOM05D003128 ORTHO05D004333 3.0e-78 295.8 210 70.0
Haze_25061 Corylus avellana HOM05D003128 ORTHO05D004333 3.9e-78 295.4 211 72.5
CBR_g45300 Chara braunii HOM05D003128 ORTHO05D004333 6.6e-78 294.7 223 66.8
Pp3c5_20530 Physcomitrium patens HOM05D003128 ORTHO05D004333 8.7e-78 294.3 213 66.7
vmacro18430 Vaccinium macrocarpon HOM05D003128 ORTHO05D004333 3.3e-77 292.4 212 69.8
EL10Ac8g20517 Beta vulgaris HOM05D003128 ORTHO05D004333 3.1e-75 285.8 210 65.7
EL10Ac8g20519 Beta vulgaris HOM05D003128 ORTHO05D004333 4.5e-74 282.0 210 65.2
Lju50C14G5 Lonicera japonica HOM05D003128 ORTHO05D004333 2.2e-73 279.6 179 78.2
SHI11304 Sapria himalayana HOM05D003128 ORTHO05D004333 2.9e-73 279.3 210 64.3
MELO3C015101.2 Cucumis melo HOM05D003128 ORTHO05D004333 8.4e-73 277.7 194 71.1
Rhsim08G0031600 Rhododendron simsii HOM05D003128 ORTHO05D004333 1.4e-72 276.9 248 60.1
ECA236G3006 Erigeron canadensis HOM05D003128 ORTHO05D004333 9.3e-72 274.2 216 64.8
FAN23G1907 Fragaria x ananassa HOM05D003128 ORTHO05D004333 2.7e-71 272.7 210 67.1
Cpa.g.sc566.1 Carica papaya HOM05D003128 ORTHO05D004333 1.1e-69 267.3 141 91.5
arahy.Tifrunner.gnm1.ann1.FV7J2W Arachis hypogaea HOM05D003128 ORTHO05D004333 2.4e-67 259.6 156 84.0
ECA236G3821 Erigeron canadensis HOM05D003128 ORTHO05D004333 3.1e-67 259.2 217 62.7
unitig_37.g12839 Utricularia gibba HOM05D003128 ORTHO05D004333 4.5e-66 255.4 216 61.1
Nitab4.5_0000184g0230 Nicotiana tabacum HOM05D003128 ORTHO05D004333 3.2e-64 249.2 156 79.5
MCO04G276 Micromonas commoda HOM05D003128 ORTHO05D004333 4.3e-61 238.8 226 56.2
HPP92_027495 Vanilla planifolia HOM05D003128 ORTHO05D004333 1.6e-60 236.9 141 80.1
PRCOL_00004456 Prasinoderma coloniale HOM05D003128 ORTHO05D004333 4.8e-60 235.3 211 60.7
Cre03.g192850 Chlamydomonas reinhardtii HOM05D003128 ORTHO05D004333 7.6e-58 228.0 230 51.3
Sc07g0006800 Simmondsia chinensis HOM05D003128 ORTHO05D004333 9.3e-56 221.1 127 83.5
ECA236G2760 Erigeron canadensis HOM05D003128 ORTHO05D004333 6.7e-54 214.9 193 60.6
Haze_27303 Corylus avellana HOM05D003128 ORTHO05D004333 6.1e-47 191.8 177 54.8
ClCG03G013760 Citrullus lanatus HOM05D003128 ORTHO05D004333 6.1e-31 138.7 201 43.3
arahy.Tifrunner.gnm1.ann1.X912KG Arachis hypogaea HOM05D003128 ORTHO05D004333 1.8e-30 137.1 71 94.4
SEGI_13299 Sequoiadendron giganteum HOM05D003128 ORTHO05D004333 5.2e-30 135.6 72 88.9
CSS0048862 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D028355 1.3e-28 131.0 75 81.3
CsaV3_1G042320 Cucumis sativus L. HOM05D003128 ORTHO05D001951 2.5e-24 116.7 213 36.6
Sc07g0006790 Simmondsia chinensis HOM05D003128 ORTHO05D004333 6.8e-22 108.6 76 72.4
HPP92_027494 Vanilla planifolia HOM05D003128 ORTHO05D004333 8.0e-15 85.1 75 58.7
HanXRQChr15g0470541 Helianthus annuus HOM05D003128 ORTHO05D028355 3.4e-13 79.7 74 56.8
Sc07g0004040 Simmondsia chinensis HOM05D003128 ORTHO05D004333 7.5e-13 78.6 54 74.1
AL5G41890 Arabidopsis lyrata HOM05D003128 ORTHO05D004333 1.4e-11 74.3 62 62.9
CSS0009858 Camellia sinensis var. sinensis HOM05D003128 ORTHO05D004333 1.0e-09 68.2 48 68.8
Sc07g0004050 Simmondsia chinensis HOM05D003128 ORTHO05D028355 2.9e-09 66.6 49 65.3
BolC8t52396H Brassica oleracea HOM05D003128 ORTHO05D028355 8.9e-06 55.1 46 54.3


User provided reference genes

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