Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 7.9e-194 680.2 342 100.0
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 1.6e-72 277.3 365 51.8
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 1.4e-68 264.2 374 49.2
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 8.2e-66 255.0 360 50.0
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 1.5e-62 244.2 374 47.1
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 1.8e-60 237.3 362 44.8
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 3.0e-60 236.5 359 44.8
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 1.5e-59 234.2 358 45.0
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 3.4e-59 233.0 359 44.6
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 1.4e-57 227.6 360 44.2
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 7.0e-57 225.3 365 45.5
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 7.0e-57 225.3 365 45.5
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 7.0e-57 225.3 360 42.8
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 6.8e-52 208.8 381 40.9
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 1.7e-50 204.1 360 42.2
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 2.2e-50 203.8 364 41.2
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 1.1e-49 201.4 143 76.2
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 2.4e-49 200.3 363 41.3
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 5.4e-49 199.1 158 68.4
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 5.4e-49 199.1 159 68.6
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 7.0e-49 198.7 159 67.3
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 7.0e-49 198.7 159 67.3
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 1.2e-48 198.0 358 40.5
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 2.7e-48 196.8 363 40.2
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 2.7e-48 196.8 364 41.5
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 4.5e-48 196.1 309 44.3
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 4.5e-48 196.1 360 40.6
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 2.9e-47 193.4 364 39.0
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 5.0e-47 192.6 143 72.7
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 5.0e-47 192.6 143 70.6
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 5.0e-47 192.6 143 72.7
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 8.6e-47 191.8 362 39.8
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 1.1e-46 191.4 360 40.0
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 1.5e-46 191.0 143 71.3
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 1.9e-46 190.7 143 71.3
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 2.5e-46 190.3 146 71.2
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 5.6e-46 189.1 143 72.0
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 7.3e-46 188.7 370 39.2
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 1.2e-45 188.0 143 69.2
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 2.8e-45 186.8 143 72.7
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 3.6e-45 186.4 362 39.2
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 3.6e-45 186.4 159 66.0
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 3.6e-45 186.4 159 66.0
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 1.0e-44 184.9 363 39.4
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 2.3e-44 183.7 143 72.7
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 3.0e-44 183.3 143 68.5
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 6.8e-44 182.2 159 66.7
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 6.8e-44 182.2 143 69.9
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 2.0e-43 180.6 158 64.6
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 2.0e-43 180.6 143 68.5
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 2.6e-43 180.3 143 69.2
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 3.4e-43 179.9 143 67.8
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 5.8e-43 179.1 142 69.0
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 5.8e-43 179.1 159 62.9
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 7.5e-43 178.7 158 63.9
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 9.8e-43 178.3 143 69.2
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 9.8e-43 178.3 143 67.1
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 1.3e-42 177.9 143 66.4
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 1.7e-42 177.6 143 67.8
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 2.9e-42 176.8 143 65.7
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 2.9e-42 176.8 143 68.5
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 6.4e-42 175.6 143 67.8
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 8.3e-42 175.3 143 66.4
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 1.1e-41 174.9 160 60.0
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-41 174.9 156 61.5
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.1e-41 174.9 359 37.9
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.4e-41 174.5 157 61.1
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 3.2e-41 173.3 143 64.3
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.1e-41 172.9 156 62.2
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 5.4e-41 172.6 156 60.9
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.4e-41 172.6 156 60.9
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 5.4e-41 172.6 143 66.4
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 5.4e-41 172.6 143 65.0
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 9.2e-41 171.8 363 37.5
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 9.2e-41 171.8 143 66.4
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 1.6e-40 171.0 147 64.6
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 2.7e-40 170.2 151 62.3
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 3.5e-40 169.9 143 65.7
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 3.5e-40 169.9 143 66.4
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 6.0e-40 169.1 149 62.4
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 7.8e-40 168.7 143 65.7
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 1.0e-39 168.3 143 65.7
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 1.0e-39 168.3 143 65.7
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 1.7e-39 167.5 143 65.0
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 1.7e-39 167.5 143 64.3
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 2.3e-39 167.2 142 64.1
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 3.0e-39 166.8 143 64.3
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 3.9e-39 166.4 143 64.3
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 3.9e-39 166.4 143 64.3
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 6.6e-39 165.6 143 63.6
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 8.6e-39 165.2 143 65.0
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 1.1e-38 164.9 143 65.0
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 1.1e-38 164.9 147 63.9
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 2.5e-38 163.7 143 62.9
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 2.5e-38 163.7 360 36.1
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 3.3e-38 163.3 143 64.3
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 4.3e-38 162.9 143 62.9
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 5.6e-38 162.5 144 61.8
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 5.6e-38 162.5 125 67.2
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 1.2e-37 161.4 143 65.7
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 1.6e-37 161.0 143 63.6
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 2.1e-37 160.6 143 60.8
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 2.8e-37 160.2 157 60.5
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 6.2e-37 159.1 128 64.1
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 1.8e-36 157.5 143 62.2
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 3.1e-36 156.8 117 69.2
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 4.0e-36 156.4 146 60.3
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 4.0e-36 156.4 143 60.8
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 2.6e-35 153.7 157 56.7
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 2.6e-35 153.7 157 56.7
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 1.3e-34 151.4 121 68.6
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 1.7e-34 151.0 145 59.3
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 4.1e-33 146.4 109 69.7
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 5.4e-33 146.0 140 59.3
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 1.6e-32 144.4 140 57.9
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.6e-32 142.9 299 36.1
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 1.0e-31 141.7 115 61.7
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 1.7e-31 141.0 143 54.5
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 2.3e-31 140.6 143 58.0
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 1.9e-30 137.5 111 65.8
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.5e-30 137.1 111 65.8
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.6e-29 134.4 147 52.4
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 2.8e-29 133.7 143 55.9
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 4.0e-28 129.8 135 52.6
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 5.2e-28 129.4 143 51.7
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 8.9e-28 128.6 147 53.1
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 1.4e-25 121.3 126 54.0
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 1.2e-24 118.2 120 51.7
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 2.1e-24 117.5 119 52.9
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 2.3e-23 114.0 131 55.0
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 1.1e-22 111.7 156 43.6
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 1.2e-21 108.2 139 41.0
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 2.8e-21 107.1 219 42.0
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 7.6e-19 99.0 118 46.6
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.1e-14 85.1 67 65.7
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.6e-14 82.8 111 46.8
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 2.1e-13 80.9 118 41.5
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 5.3e-12 76.3 108 44.4
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 7.3e-06 55.8 39 59.0


User provided reference genes

Program Settings