Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 1.8e-139 499.2 251 100.0
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 5.2e-118 427.9 251 83.7
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 6.0e-114 414.5 251 83.3
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 1.4e-110 403.3 236 84.7
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 6.4e-100 367.9 239 77.4
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 3.2e-99 365.5 236 77.1
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 3.5e-98 362.1 237 75.1
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 3.0e-97 359.0 236 76.7
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 1.9e-91 339.7 234 73.5
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 1.8e-86 323.2 244 71.7
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 7.9e-82 307.8 277 63.5
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 1.2e-77 293.9 200 72.0
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 3.8e-76 288.9 237 64.1
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 4.9e-76 288.5 237 65.0
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 8.4e-76 287.7 242 63.6
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 2.5e-75 286.2 167 82.0
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 3.2e-75 285.8 248 64.5
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 4.2e-75 285.4 240 62.9
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 4.2e-75 285.4 237 63.3
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 5.5e-75 285.0 184 76.6
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 1.6e-74 283.5 237 64.6
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 2.1e-74 283.1 241 63.9
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 3.5e-74 282.3 183 75.4
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.5e-74 282.3 169 78.7
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 3.5e-74 282.3 183 75.4
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 4.6e-74 282.0 183 75.4
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 6.0e-74 281.6 180 73.9
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 1.3e-73 280.4 237 61.6
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 3.9e-73 278.9 237 63.3
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 6.7e-73 278.1 237 62.0
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 8.7e-73 277.7 236 62.7
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 1.1e-72 277.3 236 62.7
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 1.5e-72 276.9 242 61.6
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 1.9e-72 276.6 236 62.3
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.9e-72 276.6 169 77.5
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 3.3e-72 275.8 180 73.3
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 7.4e-72 274.6 169 76.9
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 9.6e-72 274.2 184 74.5
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 1.3e-71 273.9 167 77.8
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 1.3e-71 273.9 170 77.1
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 1.3e-71 273.9 156 82.7
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 1.6e-71 273.5 176 75.0
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 2.8e-71 272.7 179 73.7
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 2.8e-71 272.7 174 75.9
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 3.7e-71 272.3 174 75.3
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 3.7e-71 272.3 233 62.7
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 4.8e-71 271.9 240 62.5
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 4.8e-71 271.9 239 61.1
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 8.2e-71 271.2 203 68.0
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 8.2e-71 271.2 175 76.6
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 1.1e-70 270.8 179 76.0
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 3.1e-70 269.2 233 62.2
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 3.1e-70 269.2 169 75.1
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 4.1e-70 268.9 174 74.7
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 5.3e-70 268.5 162 78.4
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 9.0e-70 267.7 246 60.2
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 9.0e-70 267.7 184 73.4
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 1.2e-69 267.3 157 80.3
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 1.2e-69 267.3 157 80.3
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 3.4e-69 265.8 233 60.9
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 1.3e-68 263.8 172 72.1
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.2e-68 263.1 208 66.3
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 5.0e-68 261.9 184 70.7
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 5.0e-68 261.9 183 71.0
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 8.4e-68 261.2 153 80.4
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 1.9e-67 260.0 160 76.2
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 5.5e-67 258.5 199 65.8
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 9.3e-67 257.7 219 62.1
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 1.2e-66 257.3 184 68.5
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 1.2e-66 257.3 155 79.4
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 1.6e-66 256.9 220 60.5
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 6.1e-66 255.0 154 79.9
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.3e-65 253.8 159 76.1
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 1.8e-65 253.4 171 71.9
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 1.8e-65 253.4 157 75.2
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 5.1e-65 251.9 188 67.0
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 1.1e-64 250.8 157 74.5
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 1.1e-64 250.8 234 58.5
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 4.3e-64 248.8 220 60.5
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 5.7e-64 248.4 189 66.7
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 9.7e-64 247.7 155 74.8
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 2.8e-63 246.1 220 59.1
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 3.7e-63 245.7 183 65.6
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 4.8e-63 245.4 159 73.6
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 8.2e-63 244.6 155 73.5
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 2.4e-62 243.0 147 76.9
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 9.0e-62 241.1 151 74.8
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 9.0e-62 241.1 156 76.3
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 1.5e-61 240.4 184 66.3
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 4.5e-61 238.8 229 55.0
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 4.5e-61 238.8 175 69.1
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 3.8e-60 235.7 232 56.0
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 5.0e-60 235.3 193 62.2
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 1.1e-59 234.2 157 70.1
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 7.2e-59 231.5 155 68.4
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 7.2e-59 231.5 191 61.3
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 9.4e-59 231.1 155 68.4
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 2.1e-58 229.9 235 54.0
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 2.7e-58 229.6 157 68.2
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 4.6e-58 228.8 176 63.1
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 1.0e-57 227.6 148 73.6
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 5.1e-57 225.3 144 74.3
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 5.3e-54 215.3 195 56.9
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 9.4e-51 204.5 152 65.1
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 2.1e-50 203.4 160 63.1
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 2.1e-50 203.4 176 58.5
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 3.0e-49 199.5 171 55.0
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 3.7e-47 192.6 143 68.5
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 1.1e-46 191.0 194 56.7
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 2.4e-46 189.9 155 59.4
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 1.9e-43 180.3 147 61.9
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 7.2e-43 178.3 198 51.0
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 9.7e-40 167.9 160 53.1
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 3.8e-36 156.0 84 83.3
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.7e-31 140.6 135 56.3
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 1.7e-31 140.6 135 56.3
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 4.2e-27 125.9 94 68.1
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 6.1e-26 122.1 91 70.3
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 4.0e-25 119.4 114 47.4
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 8.3e-23 111.7 85 67.1
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 1.8e-22 110.5 116 42.2
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 4.5e-21 105.9 119 44.5
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 1.3e-20 104.4 114 43.9
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 4.1e-14 82.8 117 41.9
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 1.7e-12 77.4 123 43.1
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 2.3e-12 77.0 50 70.0
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 7.5e-08 62.0 43 67.4
arahy.Tifrunner.gnm1.ann1.QG9RQP Arachis hypogaea HOM05D030826 ORTHO05D023738 9.8e-08 61.6 112 41.1
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 7.0e-06 55.5 145 28.3
Potri.008G105700 Populus trichocarpa HOM05D006725 ORTHO05D008223 9.2e-06 55.1 144 27.1


User provided reference genes

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