Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat1g005440 Pisum sativum HOM05D001353 ORTHO05D005187 1.6e-225 785.8 410 100.0
TPR.G37234 Trifolium pratense HOM05D001353 ORTHO05D005187 4.6e-172 608.2 420 79.8
Medtr2g101350 Medicago truncatula HOM05D001353 ORTHO05D005187 1.1e-165 587.0 422 78.4
Ca_01153_v3 Cicer arietinum L. HOM05D001353 ORTHO05D005187 1.0e-155 553.9 409 75.8
Lalb_Chr24g0396041 Lupinus albus HOM05D001353 ORTHO05D005187 2.3e-155 552.7 425 72.7
Glyma.15G018200 Glycine max HOM05D001353 ORTHO05D005187 5.1e-147 525.0 425 70.8
Lj3g0013233 Lotus japonicus HOM05D001353 ORTHO05D005187 1.6e-145 520.0 421 69.4
VMungo1080G1628 Vigna mungo HOM05D001353 ORTHO05D005187 2.9e-142 509.2 417 68.6
Phvul.005G170400 Phaseolus vulgaris HOM05D001353 ORTHO05D005187 6.1e-140 501.5 414 68.4
QL05p021219 Quercus lobata HOM05D001353 ORTHO05D005187 6.7e-123 444.9 420 62.4
Prupe.3G063900 Prunus persica HOM05D001353 ORTHO05D005187 3.5e-119 432.6 413 61.0
arahy.Tifrunner.gnm1.ann1.K0TTLC Arachis hypogaea HOM05D001353 ORTHO05D005187 1.0e-115 421.0 451 57.6
CiPaw.01G234100 Carya illinoinensis HOM05D001353 ORTHO05D005187 7.5e-114 414.8 418 58.1
arahy.Tifrunner.gnm1.ann1.8T8ZNV Arachis hypogaea HOM05D001353 ORTHO05D005187 1.7e-113 413.7 459 56.2
MD17G1188900 Malus domestica HOM05D001353 ORTHO05D005187 3.6e-108 396.0 415 56.4
Ciclev10025383m.g Citrus clementina HOM05D001353 ORTHO05D005187 5.2e-107 392.1 412 55.6
Thecc.06G095300 Theobroma cacao HOM05D001353 ORTHO05D005187 5.2e-107 392.1 409 53.3
Cfa002108 Carpinus fangiana HOM05D001353 ORTHO05D005187 2.8e-105 386.3 390 59.7
Haze_16338 Corylus avellana HOM05D001353 ORTHO05D005187 2.8e-105 386.3 390 60.0
FvH4_6g31960 Fragaria vesca HOM05D001353 ORTHO05D005187 5.9e-103 378.6 419 56.8
Nn2g11646 Nelumbo nucifera HOM05D001353 ORTHO05D005187 1.0e-102 377.9 439 52.2
Dinv30464 Davidia involucrata HOM05D001353 ORTHO05D005187 1.7e-102 377.1 423 54.8
CSS0044224 Camellia sinensis var. sinensis HOM05D001353 ORTHO05D005187 4.2e-101 372.5 440 53.0
Sed0007714 Sechium edule HOM05D001353 ORTHO05D005187 4.2e-101 372.5 423 53.7
FAN02G4091 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.2e-100 370.9 405 56.0
Eucgr.F03052 Eucalyptus grandis HOM05D001353 ORTHO05D005187 3.6e-100 369.4 410 53.7
CANSAT56G0514 Cannabis sativa HOM05D001353 ORTHO05D005187 8.0e-100 368.2 419 54.2
GSVIVG01017044001 Vitis vinifera HOM05D001353 ORTHO05D005187 3.0e-99 366.3 432 53.0
CsaV3_7G033510 Cucumis sativus L. HOM05D001353 ORTHO05D005187 3.4e-98 362.8 421 52.0
Gorai.003G064100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.4e-96 357.5 412 51.2
Actinidia32713 Actinidia chinensis HOM05D001353 ORTHO05D005187 1.0e-94 351.3 420 53.6
MELO3C024262.2 Cucumis melo HOM05D001353 ORTHO05D005187 7.3e-93 345.1 292 65.1
RcHm_v2.0_Chr2g0139461 Rosa chinensis HOM05D001353 ORTHO05D005187 1.4e-91 340.9 421 53.0
Sabra01G0153700 Salix brachista HOM05D001353 ORTHO05D005187 1.4e-91 340.9 412 51.0
Aqoxy7G01510 Aquilegia oxysepala HOM05D001353 ORTHO05D005187 2.0e-90 337.0 422 48.6
Duzib160G0428 Durio zibethinus HOM05D001353 ORTHO05D005187 3.4e-90 336.3 348 56.3
Solyc03g120480.3 Solanum lycopersicum HOM05D001353 ORTHO05D005187 5.8e-90 335.5 424 49.8
MBI01_g06185_MAGBIO Magnolia biondii HOM05D001353 ORTHO05D002359 9.8e-90 334.7 478 47.7
THA.LOC104817973 Tarenaya hassleriana HOM05D001353 ORTHO05D005187 1.3e-89 334.3 411 49.1
Potri.001G186600 Populus trichocarpa HOM05D001353 ORTHO05D005187 2.9e-89 333.2 417 51.6
TWI12G1071 Tripterygium wilfordii HOM05D001353 ORTHO05D005187 2.9e-89 333.2 388 54.4
FAN05G1388 Fragaria x ananassa HOM05D001353 ORTHO05D005187 1.1e-88 331.3 381 54.9
Sopen03g039360 Solanum pennellii HOM05D001353 ORTHO05D005187 1.4e-88 330.9 424 50.0
Lsat_1_v5_gn_1_34781 Lactuca sativa HOM05D001353 ORTHO05D005187 3.2e-88 329.7 417 49.2
Rhsim12G0201500 Rhododendron simsii HOM05D001353 ORTHO05D000070 3.2e-88 329.7 465 46.9
EL10Ac9g22047 Beta vulgaris HOM05D001353 ORTHO05D005187 1.2e-87 327.8 436 48.4
Thhalv10020736m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 2.7e-87 326.6 410 49.0
FAN14G4842 Fragaria x ananassa HOM05D001353 ORTHO05D005187 7.8e-87 325.1 381 55.4
PGR102G2383 Punica granatum HOM05D001353 ORTHO05D005187 1.0e-86 324.7 279 66.3
AT3G16230 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 3.9e-86 322.8 409 48.4
SalBow2G1883 Salvia bowleyana HOM05D001353 ORTHO05D005187 5.0e-86 322.4 469 47.1
ClCG09G001840 Citrullus lanatus HOM05D001353 ORTHO05D005187 1.9e-85 320.5 404 50.5
MSTRG.11044 Avicennia marina HOM05D001353 ORTHO05D005187 2.5e-85 320.1 449 47.0
AL3G28930 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 5.6e-85 318.9 409 47.9
Gohir.D03G060300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 5.6e-85 318.9 347 53.6
QL05p021238 Quercus lobata HOM05D001353 ORTHO05D005187 5.6e-85 318.9 238 73.9
Carub.0003s1598 Capsella rubella HOM05D001353 ORTHO05D005187 7.3e-85 318.5 410 47.8
Sp3g14600 Schrenkiella parvula HOM05D001353 ORTHO05D005187 9.5e-85 318.2 409 47.4
CAN.G438.39 Capsicum annuum HOM05D001353 ORTHO05D005187 2.1e-84 317.0 430 46.3
BcaB04g18890 Brassica carinata HOM05D001353 ORTHO05D005187 1.1e-83 314.7 409 47.9
PSO566G0332 Papaver somniferum HOM05D001353 ORTHO05D005187 1.2e-82 311.2 418 46.9
Gohir.D09G081500 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.5e-82 310.8 304 55.6
TAR383G0250 Trochodendron aralioides HOM05D001353 ORTHO05D005187 2.6e-82 310.1 427 48.7
Aa31LG8G3360 Aethionema arabicum HOM05D001353 ORTHO05D005187 9.8e-82 308.1 400 48.0
Migut.I00929 Erythranthe guttata HOM05D001353 ORTHO05D005187 2.2e-81 307.0 301 58.1
SGA_v2.0_scaffold5G02539 Striga asiatica HOM05D001353 ORTHO05D005187 3.2e-80 303.1 472 43.4
Nitab4.5_0006985g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.4e-80 302.4 410 47.1
Manes.11G036600 Manihot esculenta HOM05D001353 ORTHO05D005187 2.1e-79 300.4 406 47.3
PSO782G2586 Papaver somniferum HOM05D001353 ORTHO05D005187 1.7e-78 297.4 425 46.4
Cc04_g02860 Coffea canephora HOM05D001353 ORTHO05D005187 3.9e-78 296.2 353 52.7
Gorai.006G097100 Gossypium raimondii HOM05D001353 ORTHO05D005187 1.9e-77 293.9 268 59.0
Lj9A510G79 Lonicera japonica HOM05D001353 ORTHO05D005187 3.3e-77 293.1 401 47.6
vmacro16977 Vaccinium macrocarpon HOM05D001353 ORTHO05D005187 3.6e-76 289.7 467 42.8
Peaxi162Scf00015g00128 Petunia axillaris HOM05D001353 ORTHO05D005187 4.7e-76 289.3 347 52.4
ECA247G1811 Erigeron canadensis HOM05D001353 ORTHO05D005187 6.2e-76 288.9 412 45.1
Hma1.2p1_0659F.1_g197330 Hydrangea macrophylla HOM05D001353 ORTHO05D005187 8.1e-76 288.5 415 44.6
Gohir.A09G081400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 1.4e-75 287.7 374 47.1
Nitab4.5_0011578g0030 Nicotiana tabacum HOM05D001353 ORTHO05D005187 1.8e-75 287.3 322 51.6
HanXRQChr04g0096261 Helianthus annuus HOM05D001353 ORTHO05D005187 1.1e-72 278.1 408 45.1
DCAR_007575 Daucus carota HOM05D001353 ORTHO05D005187 7.8e-71 271.9 374 47.6
ATR0315G016 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.0e-70 271.6 264 59.5
BraA03t13123Z Brassica rapa HOM05D001353 ORTHO05D005187 2.3e-70 270.4 401 42.6
PGSC0003DMG401002551 Solanum tuberosum HOM05D001353 ORTHO05D005187 3.9e-70 269.6 392 46.4
A03p39730 Brassica napus HOM05D001353 ORTHO05D005187 8.6e-70 268.5 400 42.5
HPP92_005271 Vanilla planifolia HOM05D001353 ORTHO05D005187 1.2e-68 264.6 350 47.1
BolC3t17020H Brassica oleracea HOM05D001353 ORTHO05D005187 3.6e-68 263.1 366 44.5
BcaC01g03834 Brassica carinata HOM05D001353 ORTHO05D005187 1.4e-67 261.2 280 52.5
Os01g0231900 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 1.8e-67 260.8 414 43.0
CARHR091420 Cardamine hirsuta HOM05D001353 ORTHO05D005187 5.2e-67 259.2 251 59.0
AUR62031870 Chenopodium quinoa HOM05D001353 ORTHO05D005187 1.5e-66 257.7 351 47.9
Actinidia21695 Actinidia chinensis HOM05D001353 ORTHO05D005187 7.6e-66 255.4 273 57.1
Hund00659 Selenicereus undatus HOM05D001353 ORTHO05D005187 2.2e-65 253.8 359 46.8
Sc10g0007280 Simmondsia chinensis HOM05D001353 ORTHO05D005187 2.7e-63 246.9 234 59.8
CDE05G3629 Ceratophyllum demersum HOM05D001353 ORTHO05D005187 3.9e-62 243.0 269 52.8
C03p48170 Brassica napus HOM05D001353 ORTHO05D005187 8.4e-57 225.3 411 39.2
AUR62022162 Chenopodium quinoa HOM05D001353 ORTHO05D005187 2.6e-50 203.8 216 58.8
COL.COLO4_30465 Corchorus olitorius HOM05D000453 ORTHO05D000387 1.1e-48 198.4 301 46.5
Zm00001eb119210 Zea mays HOM05D001353 ORTHO05D005187 4.8e-44 183.0 201 50.7
AagrBONN_evm.TU.Sc2ySwM_368.659 Anthoceros agrestis HOM05D001353 ORTHO05D005187 2.4e-43 180.6 276 39.1
Glyma.13G355900 Glycine max HOM05D001353 ORTHO05D005187 2.4e-43 180.6 161 65.2
HanXRQChr04g0096271 Helianthus annuus HOM05D001353 ORTHO05D005187 2.0e-42 177.6 272 41.2
ATR0315G123 Amborella trichopoda HOM05D001353 ORTHO05D005187 1.4e-40 171.4 223 46.6
Nitab4.5_0000568g0110 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.5e-40 170.6 256 44.1
Nitab4.5_0001591g0200 Nicotiana tabacum HOM05D001353 ORTHO05D005187 2.3e-38 164.1 195 49.7
Nitab4.5_0021337g0010 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.9e-38 163.3 213 46.5
Gohir.A02G119300 Gossypium hirsutum HOM05D001353 ORTHO05D005187 6.7e-38 162.5 123 70.7
Cpa.g.sc109.36 Carica papaya HOM05D001353 ORTHO05D005187 5.3e-35 152.9 95 77.9
Pp3c16_10470 Physcomitrium patens HOM05D001353 ORTHO05D005187 1.7e-33 147.9 256 35.2
Atru.chr1.3457 Acer truncatum HOM05D001353 ORTHO05D005187 2.9e-33 147.1 104 76.0
Gohir.A02G119400 Gossypium hirsutum HOM05D001353 ORTHO05D005187 7.2e-32 142.5 174 46.0
BcaC09g48591 Brassica carinata HOM05D001353 ORTHO05D005187 1.2e-31 141.7 233 39.5
Mapoly0110s0022 Marchantia polymorpha HOM05D001353 ORTHO05D005187 2.7e-31 140.6 362 30.9
AT3G16220 Arabidopsis thaliana HOM05D001353 ORTHO05D005187 5.1e-30 136.3 194 42.8
A01p37890 Brassica napus HOM05D001353 ORTHO05D005187 5.1e-30 136.3 245 38.0
Carub.0003s1597 Capsella rubella HOM05D001353 ORTHO05D005187 1.5e-29 134.8 194 43.3
C01p48010 Brassica napus HOM05D001353 ORTHO05D005187 3.3e-29 133.7 231 38.5
CARHR091410 Cardamine hirsuta HOM05D001353 ORTHO05D005187 7.4e-29 132.5 193 40.9
BraA01t03849Z Brassica rapa HOM05D001353 ORTHO05D005187 2.2e-28 131.0 192 41.7
AL3G28920 Arabidopsis lyrata HOM05D001353 ORTHO05D005187 8.2e-28 129.0 194 39.7
BcaC09g48592 Brassica carinata HOM05D001353 ORTHO05D005187 8.2e-28 129.0 193 43.0
Thhalv10021339m.g Eutrema salsugineum HOM05D001353 ORTHO05D005187 1.2e-26 125.2 205 40.0
SHI11057 Sapria himalayana HOM05D001353 ORTHO05D005187 2.2e-25 120.9 90 64.4
Nitab4.5_0000568g0100 Nicotiana tabacum HOM05D001353 ORTHO05D005187 3.2e-24 117.1 226 37.2
SMO340G0259 Selaginella moellendorffii HOM05D001353 ORTHO05D005187 1.4e-22 111.7 194 37.1
CAN.G206.170 Capsicum annuum HOM05D001353 ORTHO05D005187 2.0e-21 107.8 101 56.4
Os01g0231800 Oryza sativa ssp. japonica HOM05D001353 ORTHO05D005187 7.4e-21 105.9 213 36.2
BolC3t17095H Brassica oleracea HOM05D001353 ORTHO05D000017 3.7e-20 103.6 266 33.8
COL.COLO4_30466 Corchorus olitorius HOM05D001353 ORTHO05D005187 3.7e-20 103.6 72 70.8
BcaC01g03835 Brassica carinata HOM05D001353 ORTHO05D005187 6.3e-20 102.8 189 37.0
C03p48160 Brassica napus HOM05D001353 ORTHO05D005187 2.4e-19 100.9 163 39.9
BolC3t17094H Brassica oleracea HOM05D001353 ORTHO05D005187 2.6e-18 97.4 164 38.4
CBR_g20332 Chara braunii HOM05D001353 ORTHO05D005187 3.2e-16 90.5 103 46.6
BcaC01g03832 Brassica carinata HOM05D001353 ORTHO05D005187 3.6e-15 87.0 55 74.5
PGSC0003DMG400001428 Solanum tuberosum HOM05D001353 ORTHO05D005187 7.9e-15 85.9 76 57.9
Atru.chr1.3463 Acer truncatum HOM05D001353 ORTHO05D005187 1.8e-14 84.7 56 73.2
Sp3g14590 Schrenkiella parvula HOM05D001353 ORTHO05D005187 8.8e-14 82.4 93 46.2
Solyc02g088200.4 Solanum lycopersicum HOM05D001353 ORTHO05D005187 8.8e-14 82.4 76 57.9
FvH4_4g23310 Fragaria vesca HOM05D001353 ORTHO05D005187 4.4e-13 80.1 137 38.7
Sopen02g032890 Solanum pennellii HOM05D001353 ORTHO05D005187 7.4e-13 79.3 76 56.6
FAN12G2992 Fragaria x ananassa HOM05D001353 ORTHO05D005187 2.8e-12 77.4 136 38.2
Cpa.g.c32037 Carica papaya HOM05D001353 ORTHO05D005187 1.8e-11 74.7 93 48.4
Medtr1g036590 Medicago truncatula HOM05D000351 ORTHO05D005187 9.1e-11 72.4 98 55.1
Cre01.g008000 Chlamydomonas reinhardtii HOM05D001353 ORTHO05D005187 2.6e-10 70.9 264 24.2
unitig_22.g6211 Utricularia gibba HOM05D001353 ORTHO05D005187 6.5e-09 66.2 189 31.7
FAN02G1855 Fragaria x ananassa HOM05D001353 ORTHO05D005187 3.2e-08 63.9 39 76.9
Psat1g156000 Pisum sativum HOM05D001353 ORTHO05D005187 7.2e-08 62.8 41 78.0
SHI11059 Sapria himalayana HOM05D001353 ORTHO05D005187 1.8e-06 58.2 34 73.5
Nitab4.5_0000568g0120 Nicotiana tabacum HOM05D001353 ORTHO05D005187 5.2e-06 56.6 33 78.8
unitig_22.g6212 Utricularia gibba HOM05D001353 ORTHO05D005187 5.2e-06 56.6 32 78.1
SHI11060 Sapria himalayana HOM05D001353 ORTHO05D005187 8.8e-06 55.8 60 55.0


User provided reference genes

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