Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 2.1e-266 922.2 609 100.0
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 2.2e-210 736.1 625 81.8
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 4.7e-197 691.8 520 78.3
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 5.4e-193 678.3 619 80.1
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 1.0e-191 674.1 619 80.6
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 5.0e-191 671.8 567 70.2
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 1.1e-190 670.6 630 77.6
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 4.4e-187 658.7 490 83.9
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 5.4e-185 651.7 634 78.1
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 2.1e-181 639.8 541 78.4
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 1.4e-180 637.1 631 69.3
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 1.8e-180 636.7 631 72.7
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 6.8e-180 634.8 527 74.4
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 2.0e-179 633.3 554 71.8
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 2.6e-179 632.9 444 78.2
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 3.4e-179 632.5 623 70.9
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 9.2e-177 624.4 636 67.9
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 2.1e-176 623.2 642 68.4
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 7.6e-171 604.7 635 66.9
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 9.9e-171 604.4 635 66.5
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.9e-170 602.1 635 66.3
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 1.6e-168 597.0 544 68.8
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 2.7e-168 596.3 625 69.1
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 5.1e-167 592.0 633 65.6
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 3.3e-166 589.3 631 65.6
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 2.8e-165 586.3 622 64.5
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 2.0e-163 580.1 634 66.4
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 1.7e-162 577.0 638 62.4
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 2.2e-162 576.6 631 64.3
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 3.8e-162 575.9 632 65.3
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 3.8e-162 575.9 521 73.1
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 4.6e-160 568.9 639 62.0
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 1.7e-159 567.0 645 61.4
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.1e-158 564.3 629 70.7
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 5.6e-158 562.0 639 67.1
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.1e-157 560.1 629 63.0
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 2.8e-157 559.7 500 68.8
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 2.9e-154 549.7 534 62.2
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 2.9e-154 549.7 630 59.5
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 4.9e-154 548.9 530 69.4
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 2.4e-153 546.6 531 59.7
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 3.5e-152 542.7 520 65.0
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 4.6e-152 542.3 536 60.6
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 1.8e-151 540.4 489 70.3
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 3.9e-151 539.3 527 60.3
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.5e-150 537.3 636 62.4
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.5e-150 537.3 636 60.7
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 1.9e-150 537.0 634 63.6
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 3.3e-150 536.2 622 63.7
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 7.4e-150 535.0 401 72.3
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 9.6e-150 534.6 621 59.1
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 2.4e-148 530.0 533 63.8
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 9.0e-148 528.1 440 68.2
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 9.0e-148 528.1 443 67.0
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 4.5e-147 525.8 621 58.9
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 4.5e-147 525.8 618 58.4
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 5.8e-147 525.4 631 64.3
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 9.9e-147 524.6 636 57.5
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 2.2e-146 523.5 499 67.3
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 6.4e-146 521.9 688 55.4
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 1.9e-145 520.4 626 61.8
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 3.2e-145 519.6 634 61.0
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 1.6e-144 517.3 631 54.0
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 3.5e-144 516.2 531 58.4
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 1.8e-143 513.8 514 65.2
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 3.0e-143 513.1 618 61.3
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 6.7e-143 511.9 441 67.3
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 1.5e-142 510.8 623 62.3
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 4.3e-142 509.2 693 57.0
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 2.1e-141 506.9 518 65.4
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 1.8e-140 503.8 631 63.9
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 2.4e-140 503.4 444 64.4
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 5.3e-140 502.3 631 61.8
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 2.0e-139 500.4 540 64.6
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 3.4e-139 499.6 421 66.0
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 5.8e-139 498.8 618 52.1
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 6.5e-138 495.4 440 63.9
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 6.5e-138 495.4 444 63.7
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 8.4e-138 495.0 495 64.6
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 5.5e-137 492.3 519 57.0
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 9.3e-137 491.5 644 54.2
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 2.1e-136 490.3 540 61.7
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 6.7e-135 485.3 406 66.7
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 5.7e-134 482.3 680 55.1
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 2.2e-130 470.3 635 54.8
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 5.7e-126 455.7 555 52.8
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 1.6e-125 454.1 524 60.9
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 6.3e-125 452.2 440 58.4
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 3.4e-123 446.4 350 70.0
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 9.4e-121 438.3 438 58.9
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 6.7e-119 432.2 530 60.6
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 8.8e-119 431.8 538 50.6
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 1.1e-116 424.9 448 56.7
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 9.1e-116 421.8 659 58.6
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 2.0e-115 420.6 422 58.1
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 5.9e-115 419.1 370 72.4
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 3.8e-114 416.4 522 58.8
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 1.4e-113 414.5 528 54.2
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 2.5e-113 413.7 527 60.7
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 9.4e-113 411.8 425 56.0
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 6.1e-112 409.1 531 57.6
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 3.0e-111 406.8 642 59.2
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 1.5e-110 404.4 529 52.2
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.7e-109 401.0 531 53.1
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 1.7e-109 401.0 531 53.1
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 2.8e-109 400.2 610 45.6
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 4.8e-109 399.4 532 53.2
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 2.2e-106 390.6 374 58.3
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 2.5e-105 387.1 440 52.7
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 5.3e-100 369.4 369 62.9
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 9.1e-100 368.6 369 62.9
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.2e-99 368.2 369 62.6
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.2e-99 368.2 369 62.6
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.8e-93 347.1 347 57.1
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 1.1e-92 345.1 368 51.4
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 2.0e-91 340.9 330 58.2
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 3.2e-89 333.6 305 60.3
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 3.0e-87 327.0 344 54.1
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 4.7e-80 303.1 445 48.8
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.4e-79 301.6 310 68.4
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 2.9e-77 293.9 380 48.7
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 5.0e-74 283.1 412 46.8
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 3.7e-69 266.9 271 54.2
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 2.6e-62 244.2 409 42.8
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 3.2e-60 237.3 344 45.1
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 1.6e-59 235.0 168 73.8
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 2.6e-54 217.6 284 47.5
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 9.3e-44 182.6 134 73.9
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 2.1e-43 181.4 266 58.3
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 6.0e-43 179.9 331 50.8
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.5e-41 175.3 443 36.1
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 1.2e-38 165.6 103 76.7
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 1.5e-38 165.2 152 65.1
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 2.2e-37 161.4 172 58.7
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 1.8e-31 141.7 282 37.2
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 3.4e-30 137.5 338 33.1
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 4.5e-30 137.1 274 39.4
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 1.2e-22 112.5 290 29.7
Ca_02964_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 5.5e-20 103.6 136 51.5
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 2.3e-18 98.2 59 83.1
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 3.3e-17 94.4 88 53.4
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 4.1e-15 87.4 53 73.6
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 5.9e-14 83.6 220 55.9
Peaxi162Scf00201g00230 Petunia axillaris HOM05D004839 ORTHO05D006012 1.4e-10 72.4 41 80.5
arahy.Tifrunner.gnm1.ann1.EPA5QP Arachis hypogaea HOM05D004839 ORTHO05D004485 4.3e-09 67.4 41 78.0


User provided reference genes

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