Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s425g0240 Pisum sativum HOM05D005254 ORTHO05D007557 0.0e+00 2389.0 1195 100.0
Medtr7g109730 Medicago truncatula HOM05D005254 ORTHO05D007557 0.0e+00 2235.3 1197 92.1
TPR.G4086 Trifolium pratense HOM05D005254 ORTHO05D007557 0.0e+00 2213.0 1198 91.5
Ca_09219_v3 Cicer arietinum L. HOM05D005254 ORTHO05D007557 0.0e+00 2189.5 1213 89.8
Lj1g0000440 Lotus japonicus HOM05D005254 ORTHO05D007557 0.0e+00 2104.3 1198 86.6
Glyma.03G220700 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 2067.4 1197 85.0
Glyma.19G217500 Glycine max HOM05D005254 ORTHO05D007557 0.0e+00 2062.7 1197 85.0
VMungo1383G0540 Vigna mungo HOM05D005254 ORTHO05D007557 0.0e+00 2037.7 1197 83.3
Phvul.001G214200 Phaseolus vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 2030.4 1197 83.2
Lalb_Chr04g0260001 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 2000.3 1193 81.6
Lalb_Chr15g0078051 Lupinus albus HOM05D005254 ORTHO05D007557 0.0e+00 1972.6 1199 79.8
arahy.Tifrunner.gnm1.ann1.AYF5PU Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1971.1 1224 79.0
arahy.Tifrunner.gnm1.ann1.72UXVZ Arachis hypogaea HOM05D005254 ORTHO05D007557 0.0e+00 1919.4 1201 78.6
Cfa005773 Carpinus fangiana HOM05D005254 ORTHO05D007557 0.0e+00 1791.9 1170 74.3
GSVIVG01028140001 Vitis vinifera HOM05D005254 ORTHO05D007557 0.0e+00 1782.7 1201 72.5
CiPaw.07G119100 Carya illinoinensis HOM05D005254 ORTHO05D007557 0.0e+00 1776.1 1201 71.3
QL12p019422 Quercus lobata HOM05D005254 ORTHO05D007557 0.0e+00 1773.4 1200 72.4
MD17G1277500 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1739.9 1201 70.4
Dinv10118 Davidia involucrata HOM05D005254 ORTHO05D007557 0.0e+00 1737.6 1201 70.6
RcHm_v2.0_Chr3g0487381 Rosa chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1733.4 1200 70.3
Thecc.01G315800 Theobroma cacao HOM05D005254 ORTHO05D007557 0.0e+00 1727.2 1199 70.1
Manes.05G014200 Manihot esculenta HOM05D005254 ORTHO05D007557 0.0e+00 1724.9 1206 69.9
Duzib133G0392 Durio zibethinus HOM05D005254 ORTHO05D007557 0.0e+00 1724.1 1198 69.0
FAN26G2945 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1723.8 1197 70.2
Atru.chr5.974 Acer truncatum HOM05D005254 ORTHO05D007557 0.0e+00 1722.6 1203 69.9
Gohir.D08G140700 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1721.1 1197 68.8
Gorai.004G144800 Gossypium raimondii HOM05D005254 ORTHO05D007557 0.0e+00 1720.7 1197 68.6
FvH4_1g27060 Fragaria vesca HOM05D005254 ORTHO05D007557 0.0e+00 1718.7 1197 70.0
Potri.002G194000 Populus trichocarpa HOM05D005254 ORTHO05D007557 0.0e+00 1718.7 1199 69.3
MD09G1284300 Malus domestica HOM05D005254 ORTHO05D007557 0.0e+00 1718.0 1189 70.2
FAN19G0333 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1717.6 1197 70.1
COL.COLO4_23211 Corchorus olitorius HOM05D005254 ORTHO05D007557 0.0e+00 1697.9 1238 67.5
Gohir.A08G119800 Gossypium hirsutum HOM05D005254 ORTHO05D007557 0.0e+00 1697.9 1197 67.6
Ciclev10018561m.g Citrus clementina HOM05D005254 ORTHO05D007557 0.0e+00 1696.0 1197 69.3
CANSAT25G1517 Cannabis sativa HOM05D005254 ORTHO05D007557 0.0e+00 1685.6 1182 69.6
Hma1.2p1_0486F.1_g163430 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1683.7 1202 68.9
TAR633G1480 Trochodendron aralioides HOM05D005254 ORTHO05D007557 0.0e+00 1682.2 1202 67.7
Actinidia25861 Actinidia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1679.8 1202 67.6
CSS0038291 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1669.4 1202 67.1
TWI36G0433 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 0.0e+00 1666.7 1201 67.5
PGR083G2196 Punica granatum HOM05D005254 ORTHO05D007557 0.0e+00 1658.3 1199 67.8
Eucgr.H00999 Eucalyptus grandis HOM05D005254 ORTHO05D007557 0.0e+00 1650.2 1195 67.1
Rhsim01G0292000 Rhododendron simsii HOM05D005254 ORTHO05D007557 0.0e+00 1641.3 1196 66.1
Nn3g21729 Nelumbo nucifera HOM05D005254 ORTHO05D007557 0.0e+00 1629.0 1178 66.8
Sabra02G0162400 Salix brachista HOM05D005254 ORTHO05D007557 0.0e+00 1624.0 1312 62.3
Hund09648 Selenicereus undatus HOM05D005254 ORTHO05D007557 0.0e+00 1623.6 1200 65.4
CsaV3_7G030070 Cucumis sativus L. HOM05D005254 ORTHO05D007557 0.0e+00 1620.5 1197 65.8
Sed0001136 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1617.1 1201 65.3
MBI18_g03638_MAGBIO Magnolia biondii HOM05D005254 ORTHO05D007557 0.0e+00 1616.3 1208 65.2
Sed0015859 Sechium edule HOM05D005254 ORTHO05D007557 0.0e+00 1610.1 1195 65.4
ClCG09G004990 Citrullus lanatus HOM05D005254 ORTHO05D007557 0.0e+00 1606.7 1191 66.1
Sc17g0000380 Simmondsia chinensis HOM05D005254 ORTHO05D007557 0.0e+00 1603.2 1194 64.7
HanXRQChr01g0000761 Helianthus annuus HOM05D005254 ORTHO05D007557 0.0e+00 1588.2 1188 65.5
Aqoxy5G02683 Aquilegia oxysepala HOM05D005254 ORTHO05D007557 0.0e+00 1586.2 1188 64.3
CARHR172690 Cardamine hirsuta HOM05D005254 ORTHO05D007557 0.0e+00 1583.5 1192 63.7
AL5G45120 Arabidopsis lyrata HOM05D005254 ORTHO05D007557 0.0e+00 1578.1 1191 63.6
THA.LOC104802150 Tarenaya hassleriana HOM05D005254 ORTHO05D007557 0.0e+00 1578.1 1210 63.2
Sp5g01040 Schrenkiella parvula HOM05D005254 ORTHO05D007557 0.0e+00 1577.0 1192 63.6
Cc01_g21580 Coffea canephora HOM05D005254 ORTHO05D007557 0.0e+00 1574.3 1195 64.3
CAN.G1280.35 Capsicum annuum HOM05D005254 ORTHO05D007557 0.0e+00 1573.9 1182 63.5
AT3G62360 Arabidopsis thaliana HOM05D005254 ORTHO05D007557 0.0e+00 1573.1 1193 63.6
Thhalv10005752m.g Eutrema salsugineum HOM05D005254 ORTHO05D007557 0.0e+00 1568.5 1199 62.8
A09p54350 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1566.2 1193 63.3
AUR62043231 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1565.4 1246 61.4
Migut.N00932 Erythranthe guttata HOM05D005254 ORTHO05D007557 0.0e+00 1563.9 1194 63.8
Carub.0005s2908 Capsella rubella HOM05D005254 ORTHO05D007557 0.0e+00 1562.7 1194 63.5
Ah.02g112410 Amaranthus hybridus HOM05D005254 ORTHO05D007557 0.0e+00 1562.0 1201 63.7
C08p37230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1562.0 1193 63.1
MELO3C015914.2 Cucumis melo HOM05D005254 ORTHO05D007557 0.0e+00 1558.1 1130 66.5
Aa31LG10G16290 Aethionema arabicum HOM05D005254 ORTHO05D007557 0.0e+00 1557.7 1191 63.2
BraA09t40847Z Brassica rapa HOM05D005254 ORTHO05D007557 0.0e+00 1556.2 1204 62.5
Peaxi162Scf00058g02631 Petunia axillaris HOM05D005254 ORTHO05D007557 0.0e+00 1555.4 1197 62.8
Solyc06g009530.3 Solanum lycopersicum HOM05D005254 ORTHO05D007557 0.0e+00 1553.1 1196 62.3
BolC8t51301H Brassica oleracea HOM05D005254 ORTHO05D007557 0.0e+00 1550.4 1217 62.2
DCAR_018280 Daucus carota HOM05D005254 ORTHO05D007557 0.0e+00 1549.3 1192 63.9
Sopen06g004190 Solanum pennellii HOM05D005254 ORTHO05D007557 0.0e+00 1546.2 1196 62.1
ECA248G2092 Erigeron canadensis HOM05D005254 ORTHO05D007557 0.0e+00 1540.0 1178 63.8
MSTRG.17387 Avicennia marina HOM05D005254 ORTHO05D007557 0.0e+00 1534.6 1198 62.6
PSO170G0810 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1529.2 1194 63.0
Lsat_1_v5_gn_5_191360 Lactuca sativa HOM05D005254 ORTHO05D007557 0.0e+00 1524.2 1162 64.0
PSO357G0205 Papaver somniferum HOM05D005254 ORTHO05D007557 0.0e+00 1518.8 1196 62.8
Nitab4.5_0000363g0240 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1515.0 1266 59.6
Nitab4.5_0007407g0050 Nicotiana tabacum HOM05D005254 ORTHO05D007557 0.0e+00 1513.8 1154 63.5
SalBow2G1139 Salvia bowleyana HOM05D005254 ORTHO05D007557 0.0e+00 1509.2 1200 62.6
Prupe.3G010500 Prunus persica HOM05D005254 ORTHO05D007557 0.0e+00 1508.8 1021 71.9
EL10As5g23556 Beta vulgaris HOM05D005254 ORTHO05D007557 0.0e+00 1505.3 1249 59.9
ATR0693G194 Amborella trichopoda HOM05D005254 ORTHO05D007557 0.0e+00 1502.6 1187 61.4
BcaC07g40720 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1492.2 1193 61.5
AUR62032507 Chenopodium quinoa HOM05D005254 ORTHO05D007557 0.0e+00 1478.8 1246 58.8
CDE01G0437 Ceratophyllum demersum HOM05D005254 ORTHO05D007557 0.0e+00 1469.9 1193 60.2
SGA_v2.0_scaffold6G03340 Striga asiatica HOM05D005254 ORTHO05D007557 0.0e+00 1414.4 1270 56.5
Zm00001eb340350 Zea mays HOM05D005254 ORTHO05D007557 0.0e+00 1405.6 1191 57.9
HPP92_011729 Vanilla planifolia HOM05D005254 ORTHO05D007557 0.0e+00 1397.1 1188 57.5
CSS0023845 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 0.0e+00 1394.0 1024 66.5
SEGI_30263 Sequoiadendron giganteum HOM05D005254 ORTHO05D007557 0.0e+00 1386.3 1211 56.4
Haze_05067 Corylus avellana HOM05D005254 ORTHO05D007557 0.0e+00 1341.3 1200 59.1
Hma1.2p1_0486F.1_g163440 Hydrangea macrophylla HOM05D005254 ORTHO05D007557 0.0e+00 1332.4 969 67.5
Lj1C15G16 Lonicera japonica HOM05D005254 ORTHO05D007557 0.0e+00 1292.3 987 64.8
Oeu049924.2 Olea europaea HOM05D005254 ORTHO05D007557 0.0e+00 1261.5 1184 56.1
BcaC07g40722 Brassica carinata HOM05D005254 ORTHO05D007557 0.0e+00 1245.3 1196 54.8
C06p28230 Brassica napus HOM05D005254 ORTHO05D007557 0.0e+00 1192.6 1199 52.0
Mapoly0002s0320 Marchantia polymorpha HOM05D005254 ORTHO05D007557 0.0e+00 1177.2 1219 48.8
Pp3c14_26400 Physcomitrium patens HOM05D005254 ORTHO05D007557 0.0e+00 1164.1 1205 48.6
unitig_22.g6696 Utricularia gibba HOM05D005254 ORTHO05D007557 0.0e+00 1163.7 1221 50.0
FAN23G1174 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1147.5 834 66.8
SMO145G0116 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 0.0e+00 1118.6 1196 46.9
FAN28G1559 Fragaria x ananassa HOM05D005254 ORTHO05D007557 0.0e+00 1075.8 856 64.3
BcaC07g42749 Brassica carinata HOM05D005254 ORTHO05D007557 5.8e-292 1008.1 761 63.6
Cpa.g.sc18.77 Carica papaya HOM05D005254 ORTHO05D007557 7.1e-282 974.5 711 66.9
vmacro15104 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 2.3e-264 916.4 717 62.6
AagrBONN_evm.TU.Sc2ySwM_344.3074 Anthoceros agrestis HOM05D005254 ORTHO05D007557 3.9e-256 889.0 1117 43.2
CBR_g12556 Chara braunii HOM05D005254 ORTHO05D007557 4.8e-238 828.9 1109 41.4
BcaC08g45197 Brassica carinata HOM05D005254 ORTHO05D007557 1.0e-224 784.6 582 65.5
Actinidia20982 Actinidia chinensis HOM05D005254 ORTHO05D007557 3.5e-220 769.6 1178 40.3
CSS0046339 Camellia sinensis var. sinensis HOM05D005254 ORTHO05D007557 5.6e-202 709.1 567 63.7
Migut.O00532 Erythranthe guttata HOM05D005254 ORTHO05D007557 2.3e-200 703.7 486 69.1
Oeu031896.1 Olea europaea HOM05D005254 ORTHO05D007557 1.4e-192 677.9 754 49.9
vmacro15105 Vaccinium macrocarpon HOM05D005254 ORTHO05D007557 5.4e-189 666.0 482 66.8
FAN23G1589 Fragaria x ananassa HOM05D005254 ORTHO05D007557 7.7e-151 539.3 400 66.8
Os01g0300600 Oryza sativa ssp. japonica HOM05D005254 ORTHO05D007557 1.1e-136 492.3 411 60.1
BcaC08g45196 Brassica carinata HOM05D005254 ORTHO05D007557 2.3e-131 474.6 589 45.0
SMO145G0011 Selaginella moellendorffii HOM05D005254 ORTHO05D007557 9.1e-120 436.0 715 37.2
Cpa.g.sc18.72 Carica papaya HOM05D005254 ORTHO05D007557 1.4e-96 359.0 259 66.0
BolC6t37993H Brassica oleracea HOM05D005254 ORTHO05D012489 2.3e-86 325.1 372 46.2
LjContig00310g0001105 Lotus japonicus HOM05D005254 ORTHO05D007557 9.5e-85 319.7 190 86.8
Cpa.g.sc18.74 Carica papaya HOM05D005254 ORTHO05D031611 3.6e-76 291.2 274 54.4
Psat0s2295g0200 Pisum sativum HOM05D005254 ORTHO05D031611 9.9e-74 283.1 236 66.5
Lj1A15G51 Lonicera japonica HOM05D005254 ORTHO05D007557 9.6e-61 240.0 175 66.9
SalBow3G0325 Salvia bowleyana HOM05D005254 ORTHO05D007557 9.6e-61 240.0 284 44.4
SalBow2G0161 Salvia bowleyana HOM05D005254 ORTHO05D355854 1.6e-55 222.6 292 41.8
Psat4g159280 Pisum sativum HOM05D000515 ORTHO05D020117 1.5e-45 189.5 510 34.7
TWI18G0218 Tripterygium wilfordii HOM05D005254 ORTHO05D007557 3.4e-42 178.3 135 61.5
arahy.Tifrunner.gnm1.ann1.4QV716 Arachis hypogaea HOM05D005254 ORTHO05D031611 5.0e-33 147.9 156 54.5
BolC6t37991H Brassica oleracea HOM05D005254 ORTHO05D007557 2.5e-29 135.6 167 44.3
EL10Ac4g10003 Beta vulgaris HOM05D005254 ORTHO05D007557 1.1e-13 83.6 60 68.3
CAN.G277.2 Capsicum annuum HOM05D005254 ORTHO05D115212 1.1e-13 83.6 201 30.8
CBR_g12551 Chara braunii HOM05D005254 ORTHO05D131495 3.7e-12 78.6 96 43.8
SMO145G0128 Selaginella moellendorffii HOM05D005254 ORTHO05D374975 9.1e-11 73.9 311 22.2
CAN.G317.3 Capsicum annuum HOM05D005254 ORTHO05D115878 3.5e-10 72.0 94 45.7
CAN.G2.2 Capsicum annuum HOM05D000004 ORTHO05D000002 3.8e-09 68.6 64 56.2
Actinidia23681 Actinidia chinensis HOM05D005254 ORTHO05D055336 1.1e-08 67.0 103 39.8
Actinidia04350 Actinidia chinensis HOM05D002713 ORTHO05D007644 3.2e-08 65.5 59 55.9
Actinidia06365 Actinidia chinensis HOM05D005254 ORTHO05D055108 1.4e-06 60.1 53 49.1
Nn8g39934 Nelumbo nucifera HOM05D005254 ORTHO05D278817 5.2e-06 58.2 45 62.2


User provided reference genes

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