Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 4.7e-73 277.7 136 100.0
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 2.6e-71 271.9 136 97.1
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 5.8e-71 270.8 136 96.3
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 2.2e-70 268.9 136 96.3
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.9e-69 265.8 136 95.6
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 6.0e-68 260.8 136 92.6
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 1.1e-66 256.5 136 90.4
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 1.1e-66 256.5 136 90.4
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 1.2e-65 253.1 136 89.7
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 3.1e-64 248.4 136 87.5
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 2.0e-63 245.7 134 88.1
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 9.9e-63 243.4 132 88.6
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 3.8e-62 241.5 136 88.2
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 3.8e-62 241.5 136 87.5
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 4.9e-62 241.1 136 87.5
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 8.4e-62 240.4 136 88.2
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 1.1e-61 240.0 136 87.5
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 1.1e-61 240.0 136 86.0
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 2.4e-61 238.8 136 86.8
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 3.2e-61 238.4 136 87.5
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 4.1e-61 238.0 136 86.8
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 5.4e-61 237.7 168 73.8
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 86.8
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 86.8
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 86.8
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.2e-60 236.5 136 86.0
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.6e-60 236.1 168 73.2
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.6e-60 236.1 136 84.6
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 2.1e-60 235.7 135 85.9
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 2.7e-60 235.3 136 85.3
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 3.5e-60 235.0 136 85.3
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 7.8e-60 233.8 136 86.0
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 7.8e-60 233.8 136 84.6
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.3e-59 233.0 136 84.6
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 83.1
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 83.1
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 2.3e-59 232.3 136 85.3
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.3e-59 232.3 136 85.3
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 2.3e-59 232.3 136 85.3
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 86.0
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 3.0e-59 231.9 136 84.6
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 3.9e-59 231.5 133 85.7
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 8.7e-59 230.3 136 82.4
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 8.7e-59 230.3 132 85.6
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 1.1e-58 229.9 136 83.1
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 1.1e-58 229.9 136 83.1
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 1.1e-58 229.9 136 83.1
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 1.5e-58 229.6 136 83.8
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 2.5e-58 228.8 136 82.4
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 3.3e-58 228.4 136 84.6
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 4.3e-58 228.0 134 85.1
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 4.3e-58 228.0 129 86.8
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.3e-58 228.0 129 86.8
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.3e-58 228.0 129 86.8
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 4.3e-58 228.0 129 86.8
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 7.3e-58 227.3 130 85.4
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 7.3e-58 227.3 130 85.4
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 7.3e-58 227.3 130 84.6
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 7.3e-58 227.3 136 82.4
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 9.6e-58 226.9 129 86.0
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.6e-57 226.1 127 86.6
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 2.1e-57 225.7 136 80.1
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.1e-57 225.7 136 81.6
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 2.8e-57 225.3 136 82.4
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 3.6e-57 224.9 129 84.5
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 4.7e-57 224.6 129 86.0
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 4.7e-57 224.6 129 86.0
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 4.7e-57 224.6 129 86.0
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 4.7e-57 224.6 136 82.4
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 6.2e-57 224.2 129 85.3
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 8.1e-57 223.8 131 84.0
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 1.4e-56 223.0 129 84.5
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 2.4e-56 222.2 136 82.4
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 2.4e-56 222.2 130 83.1
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 2.4e-56 222.2 136 81.6
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 2.4e-56 222.2 136 81.6
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 3.1e-56 221.9 130 84.6
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 3.1e-56 221.9 129 82.9
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 3.1e-56 221.9 130 83.1
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 4.0e-56 221.5 136 79.4
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 5.2e-56 221.1 130 83.8
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 5.2e-56 221.1 130 84.6
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 5.2e-56 221.1 130 81.5
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 6.9e-56 220.7 130 83.8
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 6.9e-56 220.7 129 83.7
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 6.9e-56 220.7 133 82.7
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 1.2e-55 219.9 129 84.5
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.5e-55 219.5 138 80.4
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 1.5e-55 219.5 127 83.5
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 3.4e-55 218.4 130 82.3
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 9.9e-55 216.9 137 79.6
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.3e-54 216.5 138 79.0
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.4e-53 213.0 136 77.9
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.4e-53 212.2 152 72.4
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 7.1e-53 210.7 136 77.2
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 2.1e-52 209.1 128 78.9
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 4.6e-52 208.0 136 75.7
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 6.6e-51 204.1 136 73.5
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 5.6e-50 201.1 200 55.0
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 5.6e-50 201.1 125 78.4
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 9.6e-50 200.3 136 72.8
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 6.2e-49 197.6 136 69.9
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 1.8e-48 196.1 131 74.8
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 4.0e-48 194.9 136 69.9
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 5.3e-48 194.5 182 58.8
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 1.5e-47 193.0 137 74.5
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 2.0e-47 192.6 136 74.3
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.2e-44 183.3 129 75.2
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 7.9e-44 180.6 133 63.2
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 2.3e-43 179.1 102 83.3
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 5.1e-43 177.9 130 63.1
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 5.6e-42 174.5 123 67.5
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 7.4e-42 174.1 127 70.9
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.6e-41 172.9 144 66.7
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 1.1e-40 170.2 132 63.6
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 8.4e-38 160.6 123 65.9
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 1.4e-37 159.8 130 59.2
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 7.1e-37 157.5 89 86.5
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 1.6e-36 156.4 89 85.4
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 1.6e-36 156.4 89 85.4
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 6.7e-35 151.0 79 89.9
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 5.6e-34 147.9 93 80.6
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 4.8e-33 144.8 134 61.2
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.4e-32 143.3 90 72.2
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 2.4e-32 142.5 85 83.5
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.1e-32 142.1 97 72.2
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.5e-31 139.8 84 82.1
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 2.6e-31 139.0 85 80.0
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.4e-31 138.7 90 71.1
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 6.5e-30 134.4 85 78.8
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 1.9e-29 132.9 85 76.5
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 5.5e-29 131.3 92 70.7
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 1.2e-28 130.2 71 83.1
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.6e-28 129.8 75 80.0
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.3e-27 126.7 90 71.1
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 1.8e-27 126.3 105 65.7
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-26 123.6 68 82.4
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.3e-26 122.1 91 71.4
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.2e-20 103.6 91 58.2
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.2e-20 103.6 65 73.8
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 3.0e-19 99.0 45 93.3
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 9.7e-18 94.0 46 89.1
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 1.7e-17 93.2 91 54.9
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.1e-16 88.6 91 52.7
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 3.0e-11 72.4 41 80.5
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 5.7e-10 68.2 56 66.1
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 5.3e-08 61.6 42 73.8
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.6e-07 59.3 57 56.1


User provided reference genes

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