Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G267900 Prunus persica HOM05D003625 ORTHO05D004382 2.8e-191 671.8 344 100.0
Prupe.8G250800 Prunus persica HOM05D003625 ORTHO05D004382 3.5e-189 664.8 344 99.4
MD02G1277900 Malus domestica HOM05D003625 ORTHO05D004382 3.2e-142 508.8 340 79.1
RcHm_v2.0_Chr6g0292351 Rosa chinensis HOM05D003625 ORTHO05D004382 7.1e-126 454.5 340 72.6
FAN20G2140 Fragaria x ananassa HOM05D003625 ORTHO05D004382 1.2e-117 427.2 394 60.9
FAN15G0592 Fragaria x ananassa HOM05D003625 ORTHO05D004382 3.5e-117 425.6 394 60.7
FAN27G0529 Fragaria x ananassa HOM05D003625 ORTHO05D004382 6.7e-116 421.4 394 60.4
FAN24G2516 Fragaria x ananassa HOM05D003625 ORTHO05D004382 2.5e-115 419.5 394 59.9
FvH4_2g24490 Fragaria vesca HOM05D003625 ORTHO05D004382 1.4e-113 413.7 394 59.9
QL01p033546 Quercus lobata HOM05D003625 ORTHO05D004382 3.2e-110 402.5 340 66.2
CiPaw.13G100200 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.0e-103 380.9 344 61.9
CANSAT25G1777 Cannabis sativa HOM05D003625 ORTHO05D004382 8.8e-100 367.9 336 61.6
Dinv32982 Davidia involucrata HOM05D003625 ORTHO05D004382 3.7e-98 362.5 345 60.0
Cfa011439 Carpinus fangiana HOM05D003625 ORTHO05D004382 7.7e-96 354.8 335 61.8
QL93p2003_0013 Quercus lobata HOM05D003625 ORTHO05D004382 3.6e-93 345.9 346 55.8
Duzib213G0855 Durio zibethinus HOM05D003625 ORTHO05D004382 4.1e-89 332.4 348 56.0
Hma1.2p1_0209F.1_g089230 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.2e-88 330.9 347 55.6
Cpa.g.sc60.39 Carica papaya HOM05D003625 ORTHO05D004382 3.5e-88 329.3 349 56.4
Manes.03G013700 Manihot esculenta HOM05D003625 ORTHO05D004382 7.7e-88 328.2 341 55.1
CSS0005803 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 1.3e-87 327.4 349 56.4
CiPaw.08G101000 Carya illinoinensis HOM05D003625 ORTHO05D004382 1.3e-87 327.4 346 55.2
Thecc.07G010400 Theobroma cacao HOM05D003625 ORTHO05D004382 1.7e-87 327.0 348 55.7
Ciclev10018730m.g Citrus clementina HOM05D003625 ORTHO05D004382 5.0e-87 325.5 347 57.3
Glyma.15G042000 Glycine max HOM05D003625 ORTHO05D004382 5.0e-87 325.5 344 54.4
Atru.chr5.1298 Acer truncatum HOM05D003625 ORTHO05D004382 8.0e-85 318.2 350 54.0
Gohir.D05G385000 Gossypium hirsutum HOM05D003625 ORTHO05D004382 3.0e-84 316.2 348 55.2
TWI59G0316 Tripterygium wilfordii HOM05D003625 ORTHO05D004382 4.0e-84 315.8 343 54.8
COL.COLO4_09853 Corchorus olitorius HOM05D003625 ORTHO05D004382 5.2e-84 315.5 347 54.2
Gohir.A04G004900 Gossypium hirsutum HOM05D003625 ORTHO05D004382 8.8e-84 314.7 352 54.5
Gorai.009G451700 Gossypium raimondii HOM05D003625 ORTHO05D004382 2.0e-83 313.5 348 54.9
VMungo1080G0322 Vigna mungo HOM05D003625 ORTHO05D004382 2.0e-83 313.5 347 54.5
Haze_04796 Corylus avellana HOM05D003625 ORTHO05D004382 4.4e-83 312.4 344 53.2
Lj2A1183G17 Lonicera japonica HOM05D003625 ORTHO05D004382 2.2e-82 310.1 353 51.3
Haze_24022 Corylus avellana HOM05D003625 ORTHO05D004382 2.8e-82 309.7 447 45.9
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 3.7e-82 309.3 346 53.8
arahy.Tifrunner.gnm1.ann1.E19P6N Arachis hypogaea HOM05D003625 ORTHO05D004382 1.8e-81 307.0 341 55.4
Duzib268G0343 Durio zibethinus HOM05D003625 ORTHO05D004382 5.4e-81 305.4 346 52.9
Glyma.13G332300 Glycine max HOM05D003625 ORTHO05D004382 7.0e-81 305.1 344 52.6
arahy.Tifrunner.gnm1.ann1.6HBC95 Arachis hypogaea HOM05D003625 ORTHO05D004382 9.1e-81 304.7 341 55.1
TAR365G1186 Trochodendron aralioides HOM05D003625 ORTHO05D004382 2.9e-79 299.7 359 49.6
CsaV3_1G033940 Cucumis sativus L. HOM05D003625 ORTHO05D004382 1.5e-78 297.4 342 52.3
Phvul.L001843 Phaseolus vulgaris HOM05D003625 ORTHO05D004382 1.2e-77 294.3 343 52.2
Potri.014G135700 Populus trichocarpa HOM05D003625 ORTHO05D004382 2.1e-77 293.5 349 51.0
Lj3g0001853 Lotus japonicus HOM05D003625 ORTHO05D004382 1.4e-76 290.8 344 52.0
Sabra14G0102100 Salix brachista HOM05D003625 ORTHO05D004382 1.8e-76 290.4 379 48.5
GSVIVG01011024001 Vitis vinifera HOM05D003625 ORTHO05D004382 4.9e-74 282.3 340 49.7
Ca_01352_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.4e-73 280.8 342 50.6
arahy.Tifrunner.gnm1.ann1.AN8C0D Arachis hypogaea HOM05D003625 ORTHO05D004382 2.4e-73 280.0 339 50.4
Ca_01349_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 2.4e-73 280.0 342 50.6
Lalb_Chr22g0350011 Lupinus albus HOM05D003625 ORTHO05D004382 9.2e-73 278.1 344 50.6
PGR044G2464 Punica granatum HOM05D003625 ORTHO05D004382 1.6e-72 277.3 332 48.8
arahy.Tifrunner.gnm1.ann1.DI3WFZ Arachis hypogaea HOM05D003625 ORTHO05D004382 2.7e-72 276.6 339 49.9
Dinv11285 Davidia involucrata HOM05D003625 ORTHO05D004382 5.9e-72 275.4 317 53.0
QL12p023448 Quercus lobata HOM05D003625 ORTHO05D004382 8.6e-71 271.6 346 47.7
MBI19_g35956_MAGBIO Magnolia biondii HOM05D003625 ORTHO05D004382 3.3e-70 269.6 361 45.4
Duzib170G0264 Durio zibethinus HOM05D003625 ORTHO05D004382 1.2e-67 261.2 293 54.9
EL10Ac7g17149 Beta vulgaris HOM05D003625 ORTHO05D004382 9.8e-67 258.1 342 43.9
MELO3C020662.2 Cucumis melo HOM05D003625 ORTHO05D004382 2.9e-66 256.5 335 48.7
AUR62034443 Chenopodium quinoa HOM05D003625 ORTHO05D004382 3.7e-66 256.1 356 44.4
Ca_19197_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.8e-65 253.8 344 47.1
vmacro02517 Vaccinium macrocarpon HOM05D003625 ORTHO05D004382 2.0e-64 250.4 306 51.6
Lj3g0005082 Lotus japonicus HOM05D003625 ORTHO05D004382 3.5e-64 249.6 346 47.7
Medtr2g096290 Medicago truncatula HOM05D003625 ORTHO05D004382 3.5e-64 249.6 344 45.6
Rhsim13G0018500 Rhododendron simsii HOM05D003625 ORTHO05D004382 3.0e-63 246.5 322 50.9
Psat5g282480 Pisum sativum HOM05D003625 ORTHO05D004382 5.0e-63 245.7 343 45.5
Oeu022807.1 Olea europaea HOM05D003625 ORTHO05D004382 6.6e-63 245.4 340 43.8
CAN.G426.9 Capsicum annuum HOM05D003625 ORTHO05D004382 1.1e-62 244.6 293 50.9
Eucgr.C03805 Eucalyptus grandis HOM05D003625 ORTHO05D004382 1.1e-62 244.6 342 45.3
SGA_v2.0_scaffold1G00428 Striga asiatica HOM05D003625 ORTHO05D004382 1.9e-62 243.8 308 45.8
Nitab4.5_0001651g0100 Nicotiana tabacum HOM05D003625 ORTHO05D004382 5.6e-62 242.3 298 50.7
Aqoxy2G00575 Aquilegia oxysepala HOM05D003625 ORTHO05D004382 1.6e-61 240.7 342 44.2
MSTRG.18201 Avicennia marina HOM05D003625 ORTHO05D004382 2.3e-60 236.9 336 44.3
Solyc09g074330.3 Solanum lycopersicum HOM05D003625 ORTHO05D004382 2.3e-60 236.9 343 46.9
Sopen09g029170 Solanum pennellii HOM05D003625 ORTHO05D004382 4.0e-60 236.1 343 46.6
Sc17g0003680 Simmondsia chinensis HOM05D003625 ORTHO05D004382 1.2e-59 234.6 346 43.9
Lalb_Chr01g0003851 Lupinus albus HOM05D003625 ORTHO05D004382 3.4e-59 233.0 333 45.9
Nitab4.5_0010231g0010 Nicotiana tabacum HOM05D003625 ORTHO05D004382 7.0e-57 225.3 293 48.8
TPR.G34304 Trifolium pratense HOM05D003625 ORTHO05D004382 3.5e-56 223.0 344 42.7
THA.LOC104801203 Tarenaya hassleriana HOM05D003625 ORTHO05D004382 6.0e-56 222.2 323 44.6
Medtr4g063030 Medicago truncatula HOM05D003625 ORTHO05D004382 1.1e-54 218.0 385 40.0
Psat7g219280 Pisum sativum HOM05D003625 ORTHO05D004382 2.5e-54 216.9 375 42.7
Potri.002G213400 Populus trichocarpa HOM05D003625 ORTHO05D004382 1.2e-53 214.5 208 59.6
ATR0626G050 Amborella trichopoda HOM05D003625 ORTHO05D004382 3.6e-53 213.0 362 39.5
DCAR_002782 Daucus carota HOM05D003625 ORTHO05D004382 4.0e-52 209.5 341 41.1
Sabra02G0149300 Salix brachista HOM05D003625 ORTHO05D004382 2.9e-50 203.4 208 56.7
unitig_0.g1186 Utricularia gibba HOM05D003625 ORTHO05D004382 8.3e-50 201.8 296 41.9
CDE05G3415 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 1.2e-48 198.0 293 41.6
DCAR_005834 Daucus carota HOM05D003625 ORTHO05D004382 3.5e-48 196.4 346 41.0
TPR.G1039 Trifolium pratense HOM05D003625 ORTHO05D004382 6.0e-48 195.7 378 38.6
Aa31LG5G2610 Aethionema arabicum HOM05D003625 ORTHO05D004382 1.0e-47 194.9 293 45.7
Cc01_g20080 Coffea canephora HOM05D003625 ORTHO05D004382 1.0e-47 194.9 331 41.7
BcaB01g01939 Brassica carinata HOM05D003625 ORTHO05D004382 3.0e-47 193.4 330 39.1
PSO407G0030 Papaver somniferum HOM05D003625 ORTHO05D004382 8.6e-47 191.8 313 39.3
AL6G49860 Arabidopsis lyrata HOM05D003625 ORTHO05D004382 1.2e-45 188.0 295 43.4
CSS0041154 Camellia sinensis var. sinensis HOM05D003625 ORTHO05D004382 2.8e-45 186.8 195 58.5
SalBow3G1663 Salvia bowleyana HOM05D003625 ORTHO05D004382 2.8e-45 186.8 389 35.7
Carub.0006s3397 Capsella rubella HOM05D003625 ORTHO05D004382 1.8e-44 184.1 292 41.8
Sp6g03120 Schrenkiella parvula HOM05D003625 ORTHO05D004382 2.3e-44 183.7 345 39.1
CARHR251510 Cardamine hirsuta HOM05D003625 ORTHO05D004382 4.0e-44 183.0 327 38.5
Thhalv10028409m.g Eutrema salsugineum HOM05D003625 ORTHO05D004382 5.2e-44 182.6 333 39.6
PSO170G6480 Papaver somniferum HOM05D003625 ORTHO05D004382 1.5e-43 181.0 313 39.9
AT4G03090 Arabidopsis thaliana HOM05D003625 ORTHO05D004382 2.6e-43 180.3 294 41.8
Ah.04g162700 Amaranthus hybridus HOM05D003625 ORTHO05D004382 6.4e-42 175.6 340 38.2
ECA236G1413 Erigeron canadensis HOM05D003625 ORTHO05D004382 8.4e-42 175.3 236 46.2
SHI14627 Sapria himalayana HOM05D003625 ORTHO05D004382 2.4e-41 173.7 377 35.8
HanXRQChr05g0150041 Helianthus annuus HOM05D003625 ORTHO05D004382 4.1e-41 172.9 240 47.1
C09p02500 Brassica napus HOM05D003625 ORTHO05D004382 1.6e-40 171.0 328 37.2
A09p02400 Brassica napus HOM05D003625 ORTHO05D004382 2.7e-40 170.2 328 37.5
BraA09t35887Z Brassica rapa HOM05D003625 ORTHO05D004382 2.7e-40 170.2 328 37.5
BcaB01g01983 Brassica carinata HOM05D003625 ORTHO05D004382 6.0e-40 169.1 328 37.2
BolC9t53180H Brassica oleracea HOM05D003625 ORTHO05D004382 6.0e-40 169.1 328 37.2
Peaxi162Scf00006g03621 Petunia axillaris HOM05D003625 ORTHO05D004382 6.6e-39 165.6 295 42.4
AUR62028969 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-38 164.5 349 36.1
HanXRQChr06g0164001 Helianthus annuus HOM05D003625 ORTHO05D004382 7.3e-38 162.2 258 42.2
Nn3g21233 Nelumbo nucifera HOM05D003625 ORTHO05D004382 6.8e-36 155.6 169 54.4
Ca_31206_v3 Cicer arietinum L. HOM05D003625 ORTHO05D004382 1.9e-33 147.5 165 55.2
Lsat_1_v5_gn_5_189721 Lactuca sativa HOM05D003625 ORTHO05D004382 3.2e-33 146.7 285 36.1
MELO3C022916.2 Cucumis melo HOM05D003625 ORTHO05D004382 3.9e-31 139.8 175 49.1
Pp3c15_10800 Physcomitrium patens HOM05D003625 ORTHO05D004382 1.9e-30 137.5 302 33.8
Pp3c9_3000 Physcomitrium patens HOM05D003625 ORTHO05D004382 4.0e-28 129.8 331 32.3
Lalb_Chr24g0394281 Lupinus albus HOM05D003625 ORTHO05D004382 1.2e-27 128.3 179 45.3
Sed0013189 Sechium edule HOM05D003625 ORTHO05D004382 3.4e-27 126.7 153 49.7
Mapoly0033s0004 Marchantia polymorpha HOM05D003625 ORTHO05D004382 3.8e-26 123.2 257 35.0
HPP92_011330 Vanilla planifolia HOM05D003625 ORTHO05D004382 1.3e-23 114.8 93 62.4
Hma1.2p1_0358F.1_g134800 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 1.6e-21 107.8 157 41.4
AagrBONN_evm.TU.Sc2ySwM_228.4764 Anthoceros agrestis HOM05D000001 ORTHO05D000003 2.1e-21 107.5 299 30.4
C02p39820 Brassica napus HOM05D003625 ORTHO05D004382 2.8e-21 107.1 129 51.9
BraA02t07497Z Brassica rapa HOM05D003625 ORTHO05D004382 1.4e-20 104.8 128 49.2
A02p25090 Brassica napus HOM05D003625 ORTHO05D004382 2.4e-20 104.0 130 50.8
AUR62036671 Chenopodium quinoa HOM05D003625 ORTHO05D004382 1.5e-19 101.3 193 37.8
SMO271G0139 Selaginella moellendorffii HOM05D003625 ORTHO05D004382 5.8e-19 99.4 228 32.9
CDE11G0573 Ceratophyllum demersum HOM05D003625 ORTHO05D004382 7.1e-17 92.4 192 34.9
Hma1.2p1_3245F.1_g334340 Hydrangea macrophylla HOM05D003625 ORTHO05D004382 9.6e-14 82.0 70 65.7
Zm00001eb115530 Zea mays HOM05D003625 ORTHO05D037860 9.6e-14 82.0 98 42.9
BcaC03g16206 Brassica carinata HOM05D003625 ORTHO05D004382 3.7e-13 80.1 105 50.5
Zm00001eb115560 Zea mays HOM05D003625 ORTHO05D037860 3.7e-13 80.1 97 42.3
BolC9t54863H Brassica oleracea HOM05D000096 ORTHO05D000045 6.9e-12 75.9 111 36.0
HanXRQChr16g0512981 Helianthus annuus HOM05D003625 ORTHO05D048258 1.3e-10 71.6 52 73.1
Lsat_1_v5_gn_8_55721 Lactuca sativa HOM05D003625 ORTHO05D004382 1.4e-09 68.2 201 34.8
MELO3C023092.2 Cucumis melo HOM05D011664 ORTHO05D015088 9.3e-09 65.5 64 51.6
TPR.G163 Trifolium pratense HOM05D003625 ORTHO05D004382 2.1e-08 64.3 89 42.7
MELO3C027569.2 Cucumis melo HOM05D011664 ORTHO05D015088 1.0e-07 62.0 58 53.4
MELO3C027354.2 Cucumis melo HOM05D011664 ORTHO05D015088 1.3e-07 61.6 74 43.2
Zm00001eb115510 Zea mays HOM05D003625 ORTHO05D004382 1.3e-07 61.6 181 30.9
Zm00001eb165880 Zea mays HOM05D003625 ORTHO05D004382 3.0e-07 60.5 102 39.2
Zm00001eb115600 Zea mays HOM05D003625 ORTHO05D004382 6.7e-07 59.3 101 34.7
MELO3C027896.2 Cucumis melo HOM05D011664 ORTHO05D015088 8.7e-07 58.9 72 44.4
MELO3C000788.2 Cucumis melo HOM05D011664 ORTHO05D015088 1.1e-06 58.5 75 42.7
Rhsim01G0181800 Rhododendron simsii HOM05D036485 ORTHO05D013105 1.1e-06 58.5 93 44.1
MELO3C027879.2 Cucumis melo HOM05D011664 ORTHO05D015088 1.5e-06 58.2 72 43.1
MELO3C028025.2 Cucumis melo HOM05D011664 ORTHO05D015088 4.3e-06 56.6 72 43.1
MELO3C028026.2 Cucumis melo HOM05D011664 ORTHO05D015088 4.3e-06 56.6 72 43.1
MELO3C028239.2 Cucumis melo HOM05D011664 ORTHO05D015088 4.3e-06 56.6 68 44.1
MELO3C032334.2 Cucumis melo HOM05D011664 ORTHO05D015088 7.4e-06 55.8 72 43.1


User provided reference genes

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