Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G183100 Prunus persica HOM05D006835 ORTHO05D008587 6.7e-81 305.1 330 100.0
RcHm_v2.0_Chr6g0281661 Rosa chinensis HOM05D006835 ORTHO05D008587 1.0e-65 254.6 330 90.6
MD10G1144800 Malus domestica HOM05D006835 ORTHO05D008587 8.8e-65 251.5 317 95.3
FAN27G3385 Fragaria x ananassa HOM05D006835 ORTHO05D008587 4.8e-63 245.7 331 89.4
FAN24G3450 Fragaria x ananassa HOM05D006835 ORTHO05D008587 2.2e-60 236.9 331 87.6
Haze_01949 Corylus avellana HOM05D006835 ORTHO05D008587 6.1e-58 228.8 327 85.6
CANSAT25G2962 Cannabis sativa HOM05D006835 ORTHO05D008587 1.8e-57 227.3 330 86.4
CiPaw.06G113200 Carya illinoinensis HOM05D006835 ORTHO05D008587 1.8e-57 227.3 328 72.6
QL11p057002 Quercus lobata HOM05D006835 ORTHO05D008587 2.3e-57 226.9 328 87.5
FvH4_2g17170 Fragaria vesca HOM05D006835 ORTHO05D008587 8.8e-57 224.9 318 89.3
CANSAT25G1616 Cannabis sativa HOM05D006835 ORTHO05D008587 2.0e-56 223.8 330 85.8
Dinv41853 Davidia involucrata HOM05D006835 ORTHO05D008587 4.1e-54 216.1 327 75.2
Thecc.02G149200 Theobroma cacao HOM05D006835 ORTHO05D008587 7.0e-54 215.3 328 85.7
Duzib132G0412 Durio zibethinus HOM05D006835 ORTHO05D008587 1.6e-53 214.2 328 83.2
Gohir.A13G063900 Gossypium hirsutum HOM05D006835 ORTHO05D008587 5.9e-53 212.2 328 85.4
COL.COLO4_04808 Corchorus olitorius HOM05D006835 ORTHO05D008587 1.7e-52 210.7 328 85.4
Gohir.D13G058000 Gossypium hirsutum HOM05D006835 ORTHO05D008587 1.7e-52 210.7 328 85.7
Potri.004G209400 Populus trichocarpa HOM05D006835 ORTHO05D008587 2.9e-52 209.9 329 82.1
Gorai.013G065400 Gossypium raimondii HOM05D006835 ORTHO05D008587 3.8e-52 209.5 328 85.4
Cc05_g09290 Coffea canephora HOM05D006835 ORTHO05D008587 3.2e-51 206.5 329 83.0
Sabra04G0141200 Salix brachista HOM05D006835 ORTHO05D008587 9.4e-51 204.9 329 81.5
Oeu034382.1 Olea europaea HOM05D006835 ORTHO05D008587 1.2e-50 204.5 329 82.7
Lj4g0005221 Lotus japonicus HOM05D006835 ORTHO05D008587 4.0e-49 199.5 328 80.8
Rhsim12G0002300 Rhododendron simsii HOM05D006835 ORTHO05D008587 4.0e-49 199.5 329 83.3
MELO3C015685.2 Cucumis melo HOM05D006835 ORTHO05D008587 2.0e-48 197.2 330 75.2
Lalb_Chr09g0328551 Lupinus albus HOM05D006835 ORTHO05D008587 4.4e-48 196.1 330 80.0
Manes.15G113100 Manihot esculenta HOM05D006835 ORTHO05D008587 4.4e-48 196.1 327 78.9
Cpa.g.sc60.7 Carica papaya HOM05D006835 ORTHO05D008587 1.3e-47 194.5 327 82.9
CsaV3_7G002240 Cucumis sativus L. HOM05D006835 ORTHO05D008587 1.3e-47 194.5 330 74.2
Atru.chr5.3592 Acer truncatum HOM05D006835 ORTHO05D008587 2.2e-47 193.7 328 83.5
MBI15_g25631_MAGBIO Magnolia biondii HOM05D006835 ORTHO05D008587 6.3e-47 192.2 329 76.0
Potri.009G170300 Populus trichocarpa HOM05D006835 ORTHO05D008587 1.1e-46 191.4 323 81.4
Glyma.13G141500 Glycine max HOM05D006835 ORTHO05D008587 1.4e-46 191.0 325 81.8
Psat7g128400 Pisum sativum HOM05D006835 ORTHO05D008587 1.8e-46 190.7 329 78.4
Ciclev10028825m.g Citrus clementina HOM05D006835 ORTHO05D008587 2.4e-46 190.3 328 79.0
Hma1.2p1_0332F.1_g127850 Hydrangea macrophylla HOM05D006835 ORTHO05D008587 4.1e-46 189.5 323 83.0
MD05G1145000 Malus domestica HOM05D006835 ORTHO05D008587 9.1e-46 188.3 298 89.9
PGR042G3426 Punica granatum HOM05D006835 ORTHO05D008587 1.2e-45 188.0 330 77.3
arahy.Tifrunner.gnm1.ann1.9A9DF4 Arachis hypogaea HOM05D006835 ORTHO05D008587 1.6e-45 187.6 329 81.2
arahy.Tifrunner.gnm1.ann1.N15UBW Arachis hypogaea HOM05D006835 ORTHO05D008587 1.6e-45 187.6 329 81.2
ClCG02G003170 Citrullus lanatus HOM05D006835 ORTHO05D008587 2.7e-45 186.8 329 75.7
Actinidia17982 Actinidia chinensis HOM05D006835 ORTHO05D008587 4.5e-45 186.0 320 80.6
THA.LOC104806593 Tarenaya hassleriana HOM05D006835 ORTHO05D008587 1.7e-44 184.1 325 51.4
GSVIVG01023845001 Vitis vinifera HOM05D006835 ORTHO05D008587 5.0e-44 182.6 329 80.9
Migut.E01343 Erythranthe guttata HOM05D006835 ORTHO05D008587 8.6e-44 181.8 329 78.4
Medtr4g084630 Medicago truncatula HOM05D006835 ORTHO05D008587 8.6e-44 181.8 322 78.0
Ca_18740_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 1.9e-43 180.6 322 79.8
Ca_30877_v3 Cicer arietinum L. HOM05D006835 ORTHO05D008587 1.9e-43 180.6 322 79.8
ECA247G0195 Erigeron canadensis HOM05D006835 ORTHO05D008587 2.5e-43 180.3 329 77.5
Sed0006636 Sechium edule HOM05D006835 ORTHO05D008587 2.5e-43 180.3 330 73.6
Sc08g0001990 Simmondsia chinensis HOM05D006835 ORTHO05D008587 4.2e-43 179.5 330 77.6
Peaxi162Scf00078g00114 Petunia axillaris HOM05D006835 ORTHO05D008587 5.5e-43 179.1 329 78.1
arahy.Tifrunner.gnm1.ann1.B8P5ZC Arachis hypogaea HOM05D006835 ORTHO05D008587 9.5e-43 178.3 329 80.5
MSTRG.1776 Avicennia marina HOM05D006835 ORTHO05D008587 1.6e-42 177.6 328 81.1
Sed0026152 Sechium edule HOM05D006835 ORTHO05D008587 3.6e-42 176.4 330 73.9
Phvul.007G148200 Phaseolus vulgaris HOM05D006835 ORTHO05D008587 4.7e-42 176.0 329 77.2
arahy.Tifrunner.gnm1.ann1.ATV9YP Arachis hypogaea HOM05D006835 ORTHO05D008587 1.0e-41 174.9 329 80.2
CAN.G430.3 Capsicum annuum HOM05D006835 ORTHO05D008587 1.4e-41 174.5 329 77.2
TPR.G31217 Trifolium pratense HOM05D006835 ORTHO05D008587 3.0e-41 173.3 363 66.4
TWI75G0734 Tripterygium wilfordii HOM05D006835 ORTHO05D008587 4.0e-41 172.9 327 79.2
Lsat_1_v5_gn_1_20201 Lactuca sativa HOM05D006835 ORTHO05D008587 5.2e-41 172.6 329 76.3
Aqoxy6G03057 Aquilegia oxysepala HOM05D006835 ORTHO05D008587 8.9e-41 171.8 328 77.7
Atru.BG.81.p Acer truncatum HOM05D006835 ORTHO05D008587 1.2e-40 171.4 312 83.7
Nn6g31561 Nelumbo nucifera HOM05D006835 ORTHO05D008587 1.2e-40 171.4 329 79.6
Sopen11g019950 Solanum pennellii HOM05D006835 ORTHO05D008587 2.6e-40 170.2 329 77.5
PGSC0003DMG400023133 Solanum tuberosum HOM05D006835 ORTHO05D008587 2.6e-40 170.2 329 77.2
SalBow8G5127 Salvia bowleyana HOM05D006835 ORTHO05D008587 3.4e-40 169.9 319 75.5
unitig_744.g24691 Utricularia gibba HOM05D006835 ORTHO05D008587 3.4e-40 169.9 325 75.7
Eucgr.H05012 Eucalyptus grandis HOM05D006835 ORTHO05D008587 1.7e-39 167.5 329 76.9
Ah.01g010510 Amaranthus hybridus HOM05D006835 ORTHO05D008587 4.9e-39 166.0 327 78.3
PSO541G0957 Papaver somniferum HOM05D006835 ORTHO05D008587 8.3e-39 165.2 338 77.8
Solyc11g044360.3 Solanum lycopersicum HOM05D006835 ORTHO05D008587 1.4e-38 164.5 316 78.2
ATR0605G237 Amborella trichopoda HOM05D006835 ORTHO05D008587 7.0e-38 162.2 322 69.9
EL10Ac9g21569 Beta vulgaris HOM05D006835 ORTHO05D008587 9.2e-38 161.8 327 75.2
SGA_v2.0_scaffold144G35876 Striga asiatica HOM05D006835 ORTHO05D008587 1.6e-37 161.0 328 76.8
AUR62010216 Chenopodium quinoa HOM05D006835 ORTHO05D008587 1.3e-36 157.9 327 73.4
Nitab4.5_0000079g0110 Nicotiana tabacum HOM05D006835 ORTHO05D008587 5.0e-36 156.0 329 79.0
AUR62013212 Chenopodium quinoa HOM05D006835 ORTHO05D008587 8.6e-36 155.2 327 72.8
Nitab4.5_0004387g0030 Nicotiana tabacum HOM05D006835 ORTHO05D008587 8.6e-36 155.2 329 78.7
CARHR293940 Cardamine hirsuta HOM05D006835 ORTHO05D008587 2.5e-35 153.7 319 68.3
Carub.0007s0005 Capsella rubella HOM05D006835 ORTHO05D008587 3.3e-35 153.3 324 66.4
Hund06347 Selenicereus undatus HOM05D006835 ORTHO05D008587 5.6e-35 152.5 327 74.3
Sp7g37590 Schrenkiella parvula HOM05D006835 ORTHO05D008587 1.6e-34 151.0 321 67.3
TPR.G38303 Trifolium pratense HOM05D006835 ORTHO05D008587 1.6e-34 151.0 329 71.1
Lsat_1_v5_gn_8_70721 Lactuca sativa HOM05D006835 ORTHO05D008587 4.7e-34 149.4 310 76.8
DCAR_006210 Daucus carota HOM05D006835 ORTHO05D008587 1.4e-33 147.9 319 69.6
Thhalv10004546m.g Eutrema salsugineum HOM05D006835 ORTHO05D008587 1.8e-33 147.5 320 67.5
AT4G38160 Arabidopsis thaliana HOM05D006835 ORTHO05D008587 2.3e-33 147.1 320 72.8
Aa31LG6G16920 Aethionema arabicum HOM05D006835 ORTHO05D008587 3.1e-33 146.7 330 65.5
AL7G10060 Arabidopsis lyrata HOM05D006835 ORTHO05D008587 5.2e-33 146.0 320 65.6
FAN15G1646 Fragaria x ananassa HOM05D006835 ORTHO05D008587 5.2e-33 146.0 80 86.2
Glyma.10G054400 Glycine max HOM05D006835 ORTHO05D008587 2.0e-32 144.1 299 81.3
C07p46880 Brassica napus HOM05D006835 ORTHO05D008587 6.0e-29 132.5 329 66.9
BolC7t45204H Brassica oleracea HOM05D006835 ORTHO05D008587 6.0e-29 132.5 329 66.9
TAR381G0995 Trochodendron aralioides HOM05D006835 ORTHO05D008587 7.8e-29 132.1 90 73.3
A03p48790 Brassica napus HOM05D006835 ORTHO05D008587 1.3e-28 131.3 330 67.6
BraA03t13979Z Brassica rapa HOM05D006835 ORTHO05D008587 1.7e-28 131.0 333 66.7
CSS0014591 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 3.0e-28 130.2 278 82.4
VMungo1309G0603 Vigna mungo HOM05D006835 ORTHO05D008587 5.0e-28 129.4 286 81.1
Ah.02g121760 Amaranthus hybridus HOM05D006835 ORTHO05D008587 8.1e-26 122.1 88 64.8
ClCG02G010730 Citrullus lanatus HOM05D006835 ORTHO05D008587 2.3e-25 120.6 296 40.5
Os08g0515800 Oryza sativa ssp. japonica HOM05D006835 ORTHO05D008587 1.5e-24 117.9 331 58.9
CDE04G0383 Ceratophyllum demersum HOM05D006835 ORTHO05D008587 2.1e-21 107.5 314 49.7
CSS0013930 Camellia sinensis var. sinensis HOM05D006835 ORTHO05D008587 2.7e-21 107.1 64 75.0
SalBow3G3248 Salvia bowleyana HOM05D006835 ORTHO05D008587 3.0e-20 103.6 287 74.6
vmacro17000 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 1.5e-19 101.3 321 43.3
SalBow4G0758 Salvia bowleyana HOM05D006835 ORTHO05D008587 3.1e-17 93.6 278 74.1
TAR381G1325 Trochodendron aralioides HOM05D006835 ORTHO05D008587 6.8e-17 92.4 57 73.7
SalBow8G1833 Salvia bowleyana HOM05D006835 ORTHO05D008587 2.6e-16 90.5 59 71.2
SEGI_34779 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 1.3e-15 88.2 60 65.0
HPP92_022026 Vanilla planifolia HOM05D006835 ORTHO05D008587 1.0e-12 78.6 59 59.3
AagrBONN_evm.TU.Sc2ySwM_344.3279 Anthoceros agrestis HOM05D006835 ORTHO05D008587 3.0e-12 77.0 315 61.0
Mapoly0015s0200 Marchantia polymorpha HOM05D006835 ORTHO05D008587 2.1e-10 70.9 90 40.0
SEGI_18890 Sequoiadendron giganteum HOM05D006835 ORTHO05D008587 2.0e-08 64.3 42 66.7
vmacro17159 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 3.4e-08 63.5 45 66.7
Actinidia20590 Actinidia chinensis HOM05D006835 ORTHO05D008587 9.9e-08 62.0 39 66.7
arahy.Tifrunner.gnm1.ann1.XHCR8J Arachis hypogaea HOM05D005956 ORTHO05D007197 9.9e-08 62.0 62 45.2
FvH4_4g20570 Fragaria vesca HOM05D005956 ORTHO05D006468 2.9e-07 60.5 62 41.9
Pp3c18_18510 Physcomitrium patens HOM05D005956 ORTHO05D007197 4.9e-07 59.7 62 43.5
PGR083G0114 Punica granatum HOM05D005956 ORTHO05D007197 6.4e-07 59.3 59 44.1
arahy.Tifrunner.gnm1.ann1.03KM4I Arachis hypogaea HOM05D005956 ORTHO05D007197 8.4e-07 58.9 62 43.5
AUR62011331 Chenopodium quinoa HOM05D001557 ORTHO05D001299 8.4e-07 58.9 62 41.9
TPR.G21350 Trifolium pratense HOM05D005956 ORTHO05D007197 1.4e-06 58.2 62 41.9
arahy.Tifrunner.gnm1.ann1.12WCBU Arachis hypogaea HOM05D005956 ORTHO05D007197 1.9e-06 57.8 62 41.9
FAN09G1770 Fragaria x ananassa HOM05D005956 ORTHO05D007197 1.9e-06 57.8 58 44.8
LjContig00482g0022414 Lotus japonicus HOM05D005956 ORTHO05D007197 2.4e-06 57.4 62 43.5
Lalb_Chr24g0392721 Lupinus albus HOM05D005956 ORTHO05D007197 2.4e-06 57.4 62 41.9
Cc07_g21430 Coffea canephora HOM05D005956 ORTHO05D007197 3.2e-06 57.0 59 40.7
Manes.14G006900 Manihot esculenta HOM05D005956 ORTHO05D007197 3.2e-06 57.0 57 43.9
Rhsim08G0251500 Rhododendron simsii HOM05D005956 ORTHO05D007197 3.2e-06 57.0 57 42.1
SMO353G0202 Selaginella moellendorffii HOM05D006835 ORTHO05D001299 4.2e-06 56.6 62 40.3
FvH4_6g36600 Fragaria vesca HOM05D005956 ORTHO05D007197 5.4e-06 56.2 58 43.1
FAN02G1317 Fragaria x ananassa HOM05D005956 ORTHO05D007197 5.4e-06 56.2 58 43.1
FAN14G1696 Fragaria x ananassa HOM05D005956 ORTHO05D007197 5.4e-06 56.2 58 43.1
vmacro17002 Vaccinium macrocarpon HOM05D006835 ORTHO05D008587 5.4e-06 56.2 90 41.1
VMungo1080G0145 Vigna mungo HOM05D005956 ORTHO05D007197 5.4e-06 56.2 62 40.3
Ah.01g006230 Amaranthus hybridus HOM05D003825 ORTHO05D004491 7.1e-06 55.8 62 41.9
Sed0023146 Sechium edule HOM05D005956 ORTHO05D007197 7.1e-06 55.8 59 44.1
Ah.05g168390 Amaranthus hybridus HOM05D005956 ORTHO05D007197 9.3e-06 55.5 58 41.4
CAN.G790.4 Capsicum annuum HOM05D005956 ORTHO05D007197 9.3e-06 55.5 60 41.7


User provided reference genes

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