Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 3.0e-91 338.6 181 100.0
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 5.3e-80 301.2 223 77.6
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 2.0e-74 282.7 223 72.6
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 4.1e-72 275.0 223 71.3
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 5.3e-72 274.6 224 71.0
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 7.0e-72 274.2 224 71.0
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 7.0e-72 274.2 224 71.0
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.2e-71 273.5 224 70.5
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.2e-70 269.2 224 70.1
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 9.1e-64 247.3 227 62.6
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 1.2e-63 246.9 216 66.2
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.7e-62 243.0 218 64.2
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 2.2e-62 242.7 228 63.6
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 3.8e-62 241.9 155 84.5
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 6.5e-62 241.1 216 63.4
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 8.5e-62 240.7 228 63.2
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 1.1e-61 240.4 216 63.9
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 1.5e-61 240.0 223 62.3
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 3.2e-61 238.8 206 67.5
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 7.2e-61 237.7 212 64.6
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 1.6e-60 236.5 205 67.3
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 2.1e-60 236.1 212 65.1
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.1e-60 236.1 213 62.4
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 3.6e-60 235.3 206 66.5
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.0e-59 233.8 213 62.4
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 1.4e-59 233.4 206 65.5
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 1.4e-59 233.4 209 64.1
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.4e-59 233.4 175 77.1
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 1.8e-59 233.0 206 64.6
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 1.8e-59 233.0 206 64.6
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 2.3e-59 232.6 209 64.6
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 3.0e-59 232.3 207 64.3
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 3.0e-59 232.3 213 62.0
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 3.0e-59 232.3 205 65.4
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 5.2e-59 231.5 217 61.8
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 5.2e-59 231.5 206 64.6
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 8.8e-59 230.7 205 64.4
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 8.8e-59 230.7 206 64.6
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 8.8e-59 230.7 205 63.9
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 8.8e-59 230.7 206 64.1
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.2e-58 230.3 209 64.1
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 1.5e-58 229.9 210 62.9
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 2.0e-58 229.6 226 61.1
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 2.6e-58 229.2 205 63.4
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 3.3e-58 228.8 206 64.6
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 1.3e-57 226.9 212 61.3
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.7e-57 226.5 204 63.7
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 2.2e-57 226.1 205 64.4
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 2.2e-57 226.1 213 60.6
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 2.8e-57 225.7 208 63.5
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 3.7e-57 225.3 206 62.6
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 4.8e-57 224.9 206 63.1
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 1.1e-56 223.8 217 59.4
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 1.1e-56 223.8 209 61.2
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 1.4e-56 223.4 205 62.4
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 1.8e-56 223.0 232 58.6
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 2.4e-56 222.6 204 62.3
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 2.4e-56 222.6 206 61.2
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 3.1e-56 222.2 205 62.4
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 3.1e-56 222.2 213 59.2
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 5.3e-56 221.5 216 58.8
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 5.3e-56 221.5 209 60.8
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 5.3e-56 221.5 207 62.8
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 7.0e-56 221.1 216 59.3
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 7.0e-56 221.1 206 61.2
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 9.1e-56 220.7 206 61.7
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 9.1e-56 220.7 206 61.7
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 9.1e-56 220.7 205 62.4
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 1.2e-55 220.3 219 58.4
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.2e-55 220.3 205 61.5
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 1.2e-55 220.3 212 59.0
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 1.6e-55 219.9 206 61.2
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.7e-55 219.2 213 58.7
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 7.7e-55 217.6 200 62.5
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.0e-54 217.2 219 59.4
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 2.2e-54 216.1 212 57.5
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 2.2e-54 216.1 206 60.7
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 2.9e-54 215.7 206 60.2
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 3.8e-54 215.3 219 58.9
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 3.8e-54 215.3 206 60.7
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 5.0e-54 214.9 208 59.6
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 5.0e-54 214.9 214 58.4
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 8.5e-54 214.2 207 58.5
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 8.5e-54 214.2 211 59.2
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 8.5e-54 214.2 204 59.8
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.5e-53 213.4 135 82.2
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 1.9e-53 213.0 194 62.9
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 3.2e-53 212.2 218 57.8
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 3.2e-53 212.2 205 60.5
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 5.5e-53 211.5 195 62.1
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 5.5e-53 211.5 218 57.3
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 7.2e-53 211.1 199 61.3
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 1.2e-52 210.3 215 55.3
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 1.6e-52 209.9 198 60.6
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 2.1e-52 209.5 210 59.0
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 2.7e-52 209.1 204 61.3
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 3.6e-52 208.8 201 60.7
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 4.7e-52 208.4 218 56.4
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 4.7e-52 208.4 199 60.3
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 6.1e-52 208.0 218 56.9
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 8.0e-52 207.6 208 58.7
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 8.0e-52 207.6 218 56.0
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 8.0e-52 207.6 205 58.5
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 1.0e-51 207.2 132 84.8
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 2.3e-51 206.1 143 76.9
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 3.0e-51 205.7 133 81.2
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 5.2e-51 204.9 218 55.5
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 6.8e-51 204.5 219 54.8
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 8.8e-51 204.1 199 58.8
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 2.0e-50 203.0 216 55.1
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 2.0e-50 203.0 216 55.1
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 9.8e-50 200.7 216 54.6
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 9.8e-50 200.7 216 54.6
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.7e-49 199.9 214 55.1
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 2.2e-49 199.5 208 56.7
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 2.8e-49 199.1 218 52.8
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 2.8e-49 199.1 208 56.7
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.1e-48 197.2 211 54.0
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 1.8e-48 196.4 212 55.7
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 5.4e-48 194.9 204 57.8
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 1.3e-46 190.3 205 53.7
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 2.9e-46 189.1 164 62.2
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 7.2e-45 184.5 144 66.7
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.6e-44 183.3 183 58.5
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 1.8e-43 179.9 183 57.4
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 3.0e-43 179.1 140 67.9
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 8.9e-43 177.6 215 47.4
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 4.4e-42 175.3 205 52.2
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 2.4e-40 169.5 144 62.5
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 3.5e-39 165.6 121 71.9
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 2.0e-31 139.8 157 56.1
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 1.6e-28 130.2 102 66.7
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 4.0e-27 125.6 133 57.1
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 4.1e-24 115.5 131 49.6
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 7.0e-24 114.8 67 91.0
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 4.6e-23 112.1 132 47.7
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 3.6e-20 102.4 111 56.8
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.5e-18 97.1 60 83.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 2.2e-17 93.2 134 38.1
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 6.4e-17 91.7 53 86.8
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 5.1e-14 82.0 64 75.0
FAN20G1163 Fragaria x ananassa HOM05D001255 ORTHO05D006136 2.5e-13 79.7 67 68.7
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.9e-09 66.2 41 85.4
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 2.4e-08 63.2 40 82.5
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 3.2e-08 62.8 104 41.3
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 2.7e-07 59.7 99 32.3
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 1.7e-06 57.0 140 25.7


User provided reference genes

Program Settings