Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 0.0e+00 1184.9 591 100.0
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 0.0e+00 1180.6 591 99.7
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 5.1e-273 944.1 587 81.6
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 1.4e-259 899.4 594 76.1
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 6.7e-249 864.0 595 72.9
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.8e-246 855.9 578 74.2
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 1.2e-226 790.0 599 68.4
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 6.3e-223 777.7 598 66.2
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 1.8e-222 776.2 598 65.9
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.8e-222 776.2 596 68.0
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 7.0e-222 774.2 596 68.0
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 7.0e-222 774.2 596 68.0
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 2.0e-221 772.7 599 64.3
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.0e-220 770.4 596 67.6
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 2.9e-220 768.8 595 65.7
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 1.5e-219 766.5 598 64.5
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 1.9e-219 766.1 599 63.9
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 2.5e-219 765.8 596 65.1
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 4.2e-219 765.0 596 64.8
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 5.5e-219 764.6 596 67.3
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 1.6e-218 763.1 596 63.8
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 2.7e-218 762.3 597 64.0
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 3.6e-218 761.9 599 64.3
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 3.0e-217 758.8 596 65.8
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 4.0e-217 758.4 602 64.3
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 9.8e-216 753.8 597 64.5
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 2.2e-215 752.7 599 64.9
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 3.7e-215 751.9 599 64.4
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 4.9e-215 751.5 595 63.4
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 4.9e-215 751.5 603 62.9
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 6.3e-215 751.1 598 63.5
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 9.1e-214 747.3 598 63.2
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 1.7e-212 743.0 598 63.4
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 2.3e-212 742.7 599 64.1
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 1.1e-211 740.3 596 62.8
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 2.1e-210 736.1 595 62.2
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 3.6e-210 735.3 613 62.6
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 6.1e-210 734.6 600 62.7
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 1.2e-208 730.3 599 62.8
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 1.2e-208 730.3 636 59.4
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 2.0e-208 729.6 595 61.3
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 1.7e-207 726.5 598 62.2
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 1.7e-207 726.5 599 62.1
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 2.9e-207 725.7 592 62.5
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 8.3e-207 724.2 614 61.4
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 1.8e-206 723.0 600 61.3
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 2.4e-206 722.6 592 62.3
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 3.2e-206 722.2 592 62.3
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 2.7e-205 719.2 597 61.6
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 7.8e-205 717.6 592 63.0
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.9e-204 715.7 597 61.6
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 6.6e-204 714.5 603 61.7
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 6.6e-204 714.5 592 62.7
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 1.6e-202 709.9 586 62.6
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 4.7e-202 708.4 596 62.8
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 1.4e-201 706.8 603 61.0
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 1.8e-201 706.4 600 60.8
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 3.1e-201 705.7 595 61.5
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 3.1e-201 705.7 601 61.4
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 3.1e-201 705.7 604 60.1
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 6.8e-201 704.5 601 61.1
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 8.9e-201 704.1 604 60.9
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 1.2e-200 703.7 599 61.4
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 3.4e-200 702.2 596 60.2
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 3.4e-200 702.2 601 60.1
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 3.4e-200 702.2 593 61.2
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 4.4e-200 701.8 602 58.8
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 9.8e-200 700.7 595 60.3
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 2.2e-199 699.5 605 60.8
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.7e-199 698.7 631 59.1
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 4.9e-199 698.4 603 60.9
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 4.9e-199 698.4 597 60.5
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 6.4e-199 698.0 599 60.8
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 1.1e-198 697.2 563 63.4
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 1.9e-198 696.4 604 59.9
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 2.4e-198 696.0 598 60.2
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 6.0e-197 691.4 598 58.2
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 1.3e-196 690.3 599 58.6
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 1.3e-196 690.3 599 60.1
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 1.3e-196 690.3 599 60.1
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 1.7e-196 689.9 600 60.0
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 8.6e-196 687.6 603 59.5
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 1.9e-195 686.4 599 59.4
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 2.5e-195 686.0 614 58.1
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 3.3e-195 685.6 599 59.3
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 3.3e-195 685.6 598 58.4
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 3.3e-195 685.6 599 57.4
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 4.3e-195 685.3 599 58.9
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 7.3e-195 684.5 600 57.8
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 1.2e-194 683.7 604 58.9
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 1.1e-193 680.6 592 58.1
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 5.2e-193 678.3 605 59.5
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 2.6e-192 676.0 593 57.5
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 3.4e-192 675.6 603 57.9
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 9.8e-192 674.1 608 55.8
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.7e-191 673.3 597 57.5
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 2.2e-191 672.9 603 57.9
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 4.9e-191 671.8 597 56.8
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 1.1e-190 670.6 599 56.9
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 4.1e-190 668.7 557 61.6
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 2.1e-189 666.4 604 57.9
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 3.3e-187 659.1 579 58.9
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 9.5e-187 657.5 524 61.1
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 9.5e-187 657.5 537 62.4
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 2.1e-186 656.4 600 57.8
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 6.2e-186 654.8 606 57.3
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 4.0e-185 652.1 592 58.3
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 5.2e-185 651.7 601 55.7
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.2e-184 650.6 595 57.6
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 4.7e-178 628.6 613 55.1
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 8.1e-178 627.9 602 55.3
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 6.0e-173 611.7 600 55.7
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 5.3e-169 598.6 597 53.3
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 8.4e-167 591.3 593 52.8
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 3.2e-166 589.3 519 58.8
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 1.3e-164 583.9 583 52.5
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 2.1e-162 576.6 598 51.8
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 1.7e-159 567.0 602 52.5
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 9.3e-150 534.6 597 49.2
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 1.4e-142 510.8 586 47.6
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 2.7e-141 506.5 599 46.6
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 8.7e-140 501.5 464 56.7
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 7.4e-139 498.4 621 46.1
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.4e-137 494.2 442 57.0
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 1.7e-135 487.3 393 64.4
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 4.2e-126 456.1 597 43.6
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 1.4e-124 451.1 595 44.9
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.6e-117 427.6 318 66.4
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 8.0e-117 425.2 363 61.2
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 4.4e-107 392.9 445 46.3
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 2.0e-104 384.0 627 37.3
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 2.5e-102 377.1 317 61.2
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 9.4e-102 375.2 509 43.6
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 6.1e-101 372.5 354 55.6
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 2.0e-99 367.5 441 46.9
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 3.4e-83 313.5 442 40.0
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 3.4e-83 313.5 267 59.9
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 4.4e-83 313.2 183 82.5
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 2.7e-72 277.3 510 38.0
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.8e-60 238.0 162 70.4
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 3.0e-55 220.7 198 57.6
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 2.3e-47 194.5 354 38.4
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 6.2e-45 186.4 119 76.5
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.4e-43 180.6 118 74.6
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 4.5e-43 180.3 226 46.9
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.5e-40 170.6 136 59.6
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.3e-37 162.2 115 70.4
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.6e-37 161.8 115 69.6
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 4.6e-32 143.7 182 47.3
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 6.0e-32 143.3 82 81.7
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 1.1e-28 132.5 135 51.1
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 1.5e-27 128.6 80 71.2
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 1.4e-25 122.1 98 60.2
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 3.0e-23 114.4 199 38.2
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 2.5e-22 111.3 181 43.1
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 2.6e-19 101.3 65 75.4
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 1.7e-18 98.6 111 55.0
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.0e-15 89.4 98 53.1
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.0e-15 87.8 98 52.0
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 3.3e-14 84.3 71 60.6
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 1.8e-12 78.6 56 58.9
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 1.4e-07 62.4 134 35.1
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 3.0e-07 61.2 34 85.3
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 3.9e-07 60.8 44 68.2
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 6.7e-07 60.1 41 70.7


User provided reference genes

Program Settings