Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G015200 Prunus persica HOM05D004159 ORTHO05D005858 0.0e+00 1186.0 591 100.0
Prupe.8G015700 Prunus persica HOM05D004159 ORTHO05D005858 0.0e+00 1180.2 591 99.7
Prupe.4G071200 Prunus persica HOM05D004159 ORTHO05D005858 1.2e-274 949.5 587 81.9
Prupe.3G291100 Prunus persica HOM05D004159 ORTHO05D005858 5.0e-260 901.0 594 76.3
MD17G1027600 Malus domestica HOM05D004159 ORTHO05D005858 1.8e-249 865.9 595 73.1
MD09G1027600 Malus domestica HOM05D004159 ORTHO05D005858 4.8e-247 857.8 578 74.4
RcHm_v2.0_Chr5g0047391 Rosa chinensis HOM05D004159 ORTHO05D005858 2.9e-228 795.4 599 68.8
FAN25G3844 Fragaria x ananassa HOM05D004159 ORTHO05D005858 4.4e-224 781.6 596 68.3
FvH4_3g26080 Fragaria vesca HOM05D004159 ORTHO05D005858 1.7e-223 779.6 596 68.3
FAN11G1291 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.7e-223 779.6 596 68.3
CiPaw.04G028300 Carya illinoinensis HOM05D004159 ORTHO05D005858 2.2e-223 779.2 598 66.4
CiPaw.03G043300 Carya illinoinensis HOM05D004159 ORTHO05D005858 6.3e-223 777.7 598 66.1
FAN16G1867 Fragaria x ananassa HOM05D004159 ORTHO05D005858 2.4e-222 775.8 596 68.0
TAR629G3285 Trochodendron aralioides HOM05D004159 ORTHO05D005858 7.0e-222 774.2 599 64.4
CSS0048893 Camellia sinensis var. sinensis HOM05D004159 ORTHO05D005858 3.5e-221 771.9 598 64.9
CANSAT64G2890 Cannabis sativa HOM05D004159 ORTHO05D005858 1.0e-220 770.4 595 65.9
FAN21G3616 Fragaria x ananassa HOM05D004159 ORTHO05D005858 1.3e-220 770.0 596 67.6
GSVIVG01032412001 Vitis vinifera HOM05D004159 ORTHO05D005858 5.0e-220 768.1 599 64.1
ClCG01G013750 Citrullus lanatus HOM05D004159 ORTHO05D005858 8.5e-220 767.3 596 65.3
QL02p074797 Quercus lobata HOM05D004159 ORTHO05D005858 1.5e-219 766.5 596 64.9
Cc07_g01750 Coffea canephora HOM05D004159 ORTHO05D005858 5.5e-219 764.6 597 64.2
TAR371G0318 Trochodendron aralioides HOM05D004159 ORTHO05D005858 5.5e-219 764.6 596 63.9
Actinidia09406 Actinidia chinensis HOM05D004159 ORTHO05D005858 3.6e-218 761.9 599 64.4
TWI56G0312 Tripterygium wilfordii HOM05D004159 ORTHO05D005858 6.1e-218 761.1 602 64.5
Haze_14736 Corylus avellana HOM05D004159 ORTHO05D005858 8.0e-218 760.8 596 65.9
Cfa007372 Carpinus fangiana HOM05D004159 ORTHO05D005858 7.5e-216 754.2 599 65.1
Nn3g16747 Nelumbo nucifera HOM05D004159 ORTHO05D005858 1.3e-215 753.4 597 64.5
Sed0001839 Sechium edule HOM05D004159 ORTHO05D005858 1.3e-215 753.4 599 64.6
Eucgr.I01748 Eucalyptus grandis HOM05D004159 ORTHO05D005858 1.7e-215 753.1 595 63.5
Hma1.2p1_0078F.1_g040070 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.2e-215 752.7 598 63.7
PGR142G2553 Punica granatum HOM05D004159 ORTHO05D005858 3.7e-215 751.9 603 63.0
Rhsim10G0017800 Rhododendron simsii HOM05D004159 ORTHO05D005858 2.4e-214 749.2 598 63.4
CsaV3_1G014060 Cucumis sativus L. HOM05D004159 ORTHO05D005858 4.5e-213 745.0 598 63.5
Sed0003581 Sechium edule HOM05D004159 ORTHO05D005858 7.7e-213 744.2 599 64.3
Lj7C599T6 Lonicera japonica HOM05D004159 ORTHO05D005858 3.8e-212 741.9 596 62.9
Potri.004G121400 Populus trichocarpa HOM05D004159 ORTHO05D005858 4.2e-211 738.4 595 62.4
Cpa.g.sc108.65 Carica papaya HOM05D004159 ORTHO05D005858 9.5e-211 737.3 613 62.8
Solyc07g047670.3 Solanum lycopersicum HOM05D004159 ORTHO05D005858 2.1e-210 736.1 600 62.8
vmacro05861 Vaccinium macrocarpon HOM05D004159 ORTHO05D005858 3.0e-209 732.3 636 59.6
Sabra04G0067000 Salix brachista HOM05D004159 ORTHO05D005858 4.0e-209 731.9 595 61.5
MSTRG.20029 Avicennia marina HOM05D004159 ORTHO05D005858 8.9e-209 730.7 599 62.9
MBI16_g23841_MAGBIO Magnolia biondii HOM05D004159 ORTHO05D005858 4.4e-208 728.4 599 62.3
MELO3C004873.2 Cucumis melo HOM05D004159 ORTHO05D005858 5.7e-208 728.0 598 62.4
Gorai.001G264700 Gossypium raimondii HOM05D004159 ORTHO05D005858 7.5e-208 727.6 592 62.7
PGSC0003DMG400006122 Solanum tuberosum HOM05D004159 ORTHO05D005858 2.9e-207 725.7 614 61.6
Gohir.D07G229600 Gossypium hirsutum HOM05D004159 ORTHO05D005858 6.3e-207 724.5 592 62.5
Peaxi162Scf00700g00427 Petunia axillaris HOM05D004159 ORTHO05D005858 6.3e-207 724.5 600 61.5
Gohir.A07G222900 Gossypium hirsutum HOM05D004159 ORTHO05D005858 8.3e-207 724.2 592 62.5
Manes.17G112500 Manihot esculenta HOM05D004159 ORTHO05D005858 5.4e-206 721.5 597 61.8
Thecc.04G016700 Theobroma cacao HOM05D004159 ORTHO05D005858 2.7e-205 719.2 592 63.2
Duzib264G0191 Durio zibethinus HOM05D004159 ORTHO05D005858 2.3e-204 716.1 592 62.8
THA.LOC104822401 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 2.9e-204 715.7 597 61.6
CAN.G1819.1 Capsicum annuum HOM05D004159 ORTHO05D005858 6.6e-204 714.5 603 61.9
COL.COLO4_29105 Corchorus olitorius HOM05D004159 ORTHO05D005858 1.9e-203 713.0 586 62.8
Duzib187G0134 Durio zibethinus HOM05D004159 ORTHO05D005858 1.2e-202 710.3 596 62.9
THA.LOC104824006 Tarenaya hassleriana HOM05D004159 ORTHO05D005858 3.6e-202 708.8 604 60.4
Ciclev10014699m.g Citrus clementina HOM05D004159 ORTHO05D005858 4.7e-202 708.4 603 61.2
SGA_v2.0_scaffold32G13248 Striga asiatica HOM05D004159 ORTHO05D005858 4.7e-202 708.4 600 61.0
AT5G14520 Arabidopsis thaliana HOM05D004159 ORTHO05D005858 8.0e-202 707.6 595 61.7
Lj1g0017236 Lotus japonicus HOM05D004159 ORTHO05D005858 1.0e-201 707.2 601 61.6
BcaB01g05107 Brassica carinata HOM05D004159 ORTHO05D005858 2.3e-201 706.1 604 61.1
LjContig00272g0012452 Lotus japonicus HOM05D004159 ORTHO05D005858 2.3e-201 706.1 601 61.2
Atru.chr6.2388 Acer truncatum HOM05D004159 ORTHO05D005858 4.0e-201 705.3 599 61.6
Sp6g29490 Schrenkiella parvula HOM05D004159 ORTHO05D005858 8.9e-201 704.1 593 61.4
DCAR_021719 Daucus carota HOM05D004159 ORTHO05D005858 1.2e-200 703.7 596 60.4
Glyma.19G232500 Glycine max HOM05D004159 ORTHO05D005858 1.2e-200 703.7 601 60.2
Thhalv10013046m.g Eutrema salsugineum HOM05D004159 ORTHO05D005858 2.6e-200 702.6 595 60.5
CDE07G0971 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 4.4e-200 701.8 602 58.8
BolC3t13270H Brassica oleracea HOM05D004159 ORTHO05D005858 5.8e-200 701.4 605 61.0
Nitab4.5_0006221g0020 Nicotiana tabacum HOM05D004159 ORTHO05D005858 1.3e-199 700.3 631 59.3
C03p07700 Brassica napus HOM05D004159 ORTHO05D005858 1.7e-199 699.9 603 61.0
VMungo0720G1997 Vigna mungo HOM05D004159 ORTHO05D005858 1.7e-199 699.9 597 60.6
Phvul.007G070900 Phaseolus vulgaris HOM05D004159 ORTHO05D005858 2.2e-199 699.5 599 60.9
AL6G25270 Arabidopsis lyrata HOM05D004159 ORTHO05D005858 2.9e-199 699.1 563 63.6
CARHR198790 Cardamine hirsuta HOM05D004159 ORTHO05D005858 4.9e-199 698.4 598 60.4
arahy.Tifrunner.gnm1.ann1.M4LD34 Arachis hypogaea HOM05D004159 ORTHO05D005858 6.4e-199 698.0 604 60.1
Aqoxy5G03802 Aquilegia oxysepala HOM05D004159 ORTHO05D005858 2.0e-197 693.0 599 58.8
A03p06670 Brassica napus HOM05D004159 ORTHO05D005858 3.5e-197 692.2 599 60.3
BraA03t10001Z Brassica rapa HOM05D004159 ORTHO05D005858 3.5e-197 692.2 599 60.3
Glyma.03G234900 Glycine max HOM05D004159 ORTHO05D005858 6.0e-197 691.4 600 60.2
Os03g0699200 Oryza sativa ssp. japonica HOM05D004159 ORTHO05D005858 2.3e-196 689.5 598 58.0
Nitab4.5_0003930g0060 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.0e-196 689.1 603 59.7
Migut.B00156 Erythranthe guttata HOM05D004159 ORTHO05D005858 5.0e-196 688.3 599 59.6
HanXRQChr04g0114031 Helianthus annuus HOM05D004159 ORTHO05D005858 6.6e-196 688.0 598 58.5
Migut.N01406 Erythranthe guttata HOM05D004159 ORTHO05D005858 8.6e-196 687.6 599 59.4
Zm00001eb053960 Zea mays HOM05D004159 ORTHO05D005858 8.6e-196 687.6 614 58.3
HanXRQChr14g0462651 Helianthus annuus HOM05D004159 ORTHO05D005858 1.1e-195 687.2 599 57.6
SalBow6G0855 Salvia bowleyana HOM05D004159 ORTHO05D005858 1.1e-195 687.2 599 59.1
EL10Ac8g19455 Beta vulgaris HOM05D004159 ORTHO05D005858 1.5e-195 686.8 600 58.0
Lalb_Chr06g0175751 Lupinus albus HOM05D004159 ORTHO05D005858 4.3e-195 685.3 604 59.1
ATR1132G032 Amborella trichopoda HOM05D004159 ORTHO05D005858 1.4e-193 680.2 592 58.3
Psat0s1782g0040 Pisum sativum HOM05D004159 ORTHO05D005858 1.8e-193 679.9 605 59.7
Medtr7g100040 Medicago truncatula HOM05D004159 ORTHO05D005858 8.9e-193 677.6 603 58.0
PSO764G0137 Papaver somniferum HOM05D004159 ORTHO05D005858 8.9e-193 677.6 593 57.7
Lsat_1_v5_gn_2_51000 Lactuca sativa HOM05D004159 ORTHO05D005858 2.6e-192 676.0 608 55.9
AUR62040778 Chenopodium quinoa HOM05D004159 ORTHO05D005858 3.4e-192 675.6 597 57.6
Lalb_Chr02g0160481 Lupinus albus HOM05D004159 ORTHO05D005858 7.5e-192 674.5 603 58.0
PSO017G2175 Papaver somniferum HOM05D004159 ORTHO05D005858 1.7e-191 673.3 597 57.0
ECA240G1354 Erigeron canadensis HOM05D004159 ORTHO05D005858 8.3e-191 671.0 599 57.1
Carub.0006s1270 Capsella rubella HOM05D004159 ORTHO05D005858 1.1e-190 670.6 557 61.8
Aa31LG11G15290 Aethionema arabicum HOM05D004159 ORTHO05D005858 4.1e-190 668.7 604 58.1
Oeu048622.3 Olea europaea HOM05D004159 ORTHO05D005858 1.1e-187 660.6 579 59.1
AUR62040779 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.9e-187 659.8 524 61.3
Dinv33444 Davidia involucrata HOM05D004159 ORTHO05D005858 7.3e-187 657.9 537 62.6
TPR.G1071 Trifolium pratense HOM05D004159 ORTHO05D005858 7.3e-187 657.9 600 58.0
Ah.09g231680 Amaranthus hybridus HOM05D004159 ORTHO05D005858 1.2e-186 657.1 606 57.4
ClCG11G000220 Citrullus lanatus HOM05D004159 ORTHO05D005858 1.4e-185 653.7 592 58.4
Hund22314 Selenicereus undatus HOM05D004159 ORTHO05D005858 1.4e-185 653.7 596 55.9
Ca_26485_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 4.0e-185 652.1 595 57.8
unitig_21.g20810 Utricularia gibba HOM05D004159 ORTHO05D005858 2.8e-178 629.4 602 55.5
CDE06G0546 Ceratophyllum demersum HOM05D004159 ORTHO05D005858 4.7e-178 628.6 613 55.1
HPP92_005716 Vanilla planifolia HOM05D004159 ORTHO05D005858 6.0e-173 611.7 600 55.7
AUR62029204 Chenopodium quinoa HOM05D004159 ORTHO05D005858 1.1e-169 600.9 597 53.4
PSO478G0945 Papaver somniferum HOM05D004159 ORTHO05D005858 2.2e-167 593.2 593 53.0
Sopen07g024120 Solanum pennellii HOM05D004159 ORTHO05D005858 1.1e-166 590.9 519 59.0
Lsat_1_v5_gn_4_179560 Lactuca sativa HOM05D004159 ORTHO05D005858 4.6e-165 585.5 583 52.7
SEGI_02382 Sequoiadendron giganteum HOM05D004159 ORTHO05D005858 4.3e-163 578.9 597 52.1
Medtr8g010330 Medicago truncatula HOM05D004159 ORTHO05D005858 5.8e-160 568.5 602 52.7
ECA248G2726 Erigeron canadensis HOM05D004159 ORTHO05D005858 2.5e-150 536.6 597 49.4
SMO356G0182 Selaginella moellendorffii HOM05D004159 ORTHO05D005858 3.8e-143 512.7 586 47.8
Mapoly0138s0023 Marchantia polymorpha HOM05D004159 ORTHO05D005858 9.3e-142 508.1 599 46.7
arahy.Tifrunner.gnm1.ann1.M9AKWN Arachis hypogaea HOM05D004159 ORTHO05D005858 3.0e-140 503.1 464 56.9
AagrBONN_evm.TU.Sc2ySwM_362.1908 Anthoceros agrestis HOM05D004159 ORTHO05D005858 1.5e-139 500.7 621 46.2
Nitab4.5_0008375g0010 Nicotiana tabacum HOM05D004159 ORTHO05D005858 3.7e-138 496.1 442 57.2
Dinv35104 Davidia involucrata HOM05D004159 ORTHO05D005858 1.3e-135 487.6 393 64.6
Pp3c3_23250 Physcomitrium patens HOM05D004159 ORTHO05D005858 4.2e-126 456.1 597 43.6
CBR_g38896 Chara braunii HOM05D004159 ORTHO05D005858 4.7e-125 452.6 595 45.0
Hma1.2p1_2964F.1_g330970 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 5.5e-118 429.1 318 66.7
Ca_22754_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 2.7e-117 426.8 363 61.4
MCO04G526 Micromonas commoda HOM05D004159 ORTHO05D005858 9.8e-107 391.7 445 46.1
Cre16.g683793 Chlamydomonas reinhardtii HOM05D004159 ORTHO05D005858 2.0e-104 384.0 628 37.4
Sc03g0007500 Simmondsia chinensis HOM05D004159 ORTHO05D005858 3.8e-103 379.8 317 61.5
TPR.G27000 Trifolium pratense HOM05D004159 ORTHO05D005858 3.2e-102 376.7 509 43.8
Hma1.2p1_0999F.1_g246250 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 2.1e-101 374.0 354 55.9
PRCOL_00002170 Prasinoderma coloniale HOM05D004159 ORTHO05D005858 2.0e-99 367.5 441 46.9
Haze_26879 Corylus avellana HOM05D004159 ORTHO05D005858 2.3e-84 317.4 442 40.3
Zm00001eb053940 Zea mays HOM05D004159 ORTHO05D005858 8.9e-84 315.5 267 60.3
RcHm_v2.0_Chr5g0047861 Rosa chinensis HOM05D004159 ORTHO05D036595 4.4e-83 313.2 183 82.5
Cfa027221 Carpinus fangiana HOM05D004159 ORTHO05D006938 7.8e-72 275.8 510 38.0
Sc03g0007510 Simmondsia chinensis HOM05D004159 ORTHO05D005858 1.8e-60 238.0 162 70.4
Psat1g081880 Pisum sativum HOM05D004159 ORTHO05D019349 1.0e-55 222.2 198 58.1
PSO675G5574 Papaver somniferum HOM05D004159 ORTHO05D302046 5.1e-47 193.4 352 38.4
MD10G1043900 Malus domestica HOM05D004159 ORTHO05D036595 6.2e-45 186.4 119 76.5
Gohir.D06G181800 Gossypium hirsutum HOM05D004159 ORTHO05D021100 3.4e-43 180.6 118 74.6
BcaB01g05108 Brassica carinata HOM05D004159 ORTHO05D005858 4.5e-43 180.3 226 46.9
Hma1.2p1_0999F.1_g246240 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.5e-40 170.6 136 59.6
Gorai.013G041700 Gossypium raimondii HOM05D004159 ORTHO05D005858 1.3e-37 162.2 115 70.4
Gohir.D13G037150 Gossypium hirsutum HOM05D004159 ORTHO05D021100 1.6e-37 161.8 115 69.6
Ca_31061_v3 Cicer arietinum L. HOM05D004159 ORTHO05D005858 1.6e-32 145.2 182 47.8
RcHm_v2.0_Chr5g0047691 Rosa chinensis HOM05D004159 ORTHO05D036595 6.0e-32 143.3 82 81.7
HanXRQChr05g0138871 Helianthus annuus HOM05D004159 ORTHO05D005858 3.7e-29 134.0 135 51.9
SEGI_01298 Sequoiadendron giganteum HOM05D004159 ORTHO05D021100 1.5e-27 128.6 80 71.2
Actinidia33332 Actinidia chinensis HOM05D004159 ORTHO05D002141 3.8e-26 124.0 98 61.2
Aa31sc84G60 Aethionema arabicum HOM05D004159 ORTHO05D007259 3.0e-23 114.4 199 38.2
Medtr6g022610 Medicago truncatula HOM05D004159 ORTHO05D005858 2.5e-22 111.3 181 43.1
MD13G1107200 Malus domestica HOM05D004159 ORTHO05D021100 2.6e-19 101.3 65 75.4
Actinidia35769 Actinidia chinensis HOM05D004159 ORTHO05D021100 1.7e-18 98.6 111 55.0
Hma1.2p1_0078F.1_g040075 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 1.0e-15 89.4 98 53.1
Hma1.2p1_0078F.1_g040060 Hydrangea macrophylla HOM05D004159 ORTHO05D005858 3.0e-15 87.8 98 52.0
Medtr6g022550 Medicago truncatula HOM05D004159 ORTHO05D005858 3.3e-14 84.3 71 60.6
Lj2g0001382 Lotus japonicus HOM05D004159 ORTHO05D235994 1.8e-12 78.6 56 58.9
Nitab4.5_0008375g0030 Nicotiana tabacum HOM05D004159 ORTHO05D285123 1.4e-07 62.4 134 35.1
Gohir.D10G229800 Gossypium hirsutum HOM05D000561 ORTHO05D000514 3.0e-07 61.2 34 85.3
VMungo0464G0208 Vigna mungo HOM05D005746 ORTHO05D007105 3.9e-07 60.8 44 68.2
Zm00001eb053920 Zea mays HOM05D004159 ORTHO05D021100 6.7e-07 60.1 41 70.7


User provided reference genes

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