Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.8G007100 Prunus persica HOM05D006697 ORTHO05D008161 1.9e-116 422.5 215 100.0
QL09p001838 Quercus lobata HOM05D006697 ORTHO05D008161 1.5e-84 316.6 249 67.9
QL11p001773 Quercus lobata HOM05D006697 ORTHO05D008161 9.4e-84 313.9 249 67.5
RcHm_v2.0_Chr6g0251241 Rosa chinensis HOM05D006697 ORTHO05D008161 1.4e-82 310.1 241 67.2
MD05G1004600 Malus domestica HOM05D006697 ORTHO05D008161 5.2e-82 308.1 235 69.8
FvH4_2g00851 Fragaria vesca HOM05D006697 ORTHO05D008161 8.8e-82 307.4 241 67.2
CiPaw.04G009300 Carya illinoinensis HOM05D006697 ORTHO05D008161 5.7e-81 304.7 247 64.0
FAN27G1710 Fragaria x ananassa HOM05D006697 ORTHO05D008161 1.1e-79 300.4 241 66.0
CANSAT21G1464 Cannabis sativa HOM05D006697 ORTHO05D008161 3.1e-79 298.9 248 64.1
CANSAT21G1945 Cannabis sativa HOM05D006697 ORTHO05D008161 1.6e-78 296.6 245 64.9
Potri.001G377100 Populus trichocarpa HOM05D006697 ORTHO05D008161 1.6e-78 296.6 239 66.5
Hma1.2p1_0417F.1_g148910 Hydrangea macrophylla HOM05D006697 ORTHO05D008161 2.2e-77 292.7 229 64.6
Lj5C630T5 Lonicera japonica HOM05D006697 ORTHO05D008161 3.8e-77 292.0 227 64.3
Dinv22109 Davidia involucrata HOM05D006697 ORTHO05D008161 5.0e-77 291.6 249 61.4
AUR62038532 Chenopodium quinoa HOM05D006697 ORTHO05D008161 3.6e-75 285.4 227 63.9
GSVIVG01036291001 Vitis vinifera HOM05D006697 ORTHO05D008161 6.1e-75 284.6 221 65.6
Aqoxy7G01951 Aquilegia oxysepala HOM05D006697 ORTHO05D008161 8.0e-75 284.3 234 62.8
Atru.chr13.2494 Acer truncatum HOM05D006697 ORTHO05D008161 1.0e-74 283.9 246 61.0
Atru.chr13.2506 Acer truncatum HOM05D006697 ORTHO05D008161 1.0e-74 283.9 246 61.0
AUR62013379 Chenopodium quinoa HOM05D006697 ORTHO05D008161 1.4e-74 283.5 239 61.9
Sc23g0000070 Simmondsia chinensis HOM05D006697 ORTHO05D008161 1.4e-74 283.5 225 64.4
TPR.G29429 Trifolium pratense HOM05D006697 ORTHO05D008161 1.4e-74 283.5 240 62.9
Sabra16G0248400 Salix brachista HOM05D006697 ORTHO05D008161 2.3e-74 282.7 245 62.4
Phvul.011G017400 Phaseolus vulgaris HOM05D006697 ORTHO05D008161 3.0e-74 282.3 243 62.1
TWI12G1402 Tripterygium wilfordii HOM05D006697 ORTHO05D008161 4.0e-74 282.0 232 61.2
Actinidia03526 Actinidia chinensis HOM05D006697 ORTHO05D008161 6.8e-74 281.2 241 61.0
EL10Ac1g01267 Beta vulgaris HOM05D006697 ORTHO05D008161 6.8e-74 281.2 227 62.6
SGA_v2.0_scaffold24G10647 Striga asiatica HOM05D006697 ORTHO05D008161 6.8e-74 281.2 241 59.8
Psat1g020920 Pisum sativum HOM05D006697 ORTHO05D008161 1.2e-73 280.4 235 63.0
Glyma.11G110500 Glycine max HOM05D006697 ORTHO05D008161 2.0e-73 279.6 244 60.2
Migut.C01379 Erythranthe guttata HOM05D006697 ORTHO05D008161 3.4e-73 278.9 230 60.9
Lj7A235T22 Lonicera japonica HOM05D006697 ORTHO05D008161 3.4e-73 278.9 221 64.7
Thecc.08G178500 Theobroma cacao HOM05D006697 ORTHO05D008161 4.4e-73 278.5 251 59.4
VMungo1127G1290 Vigna mungo HOM05D006697 ORTHO05D008161 4.4e-73 278.5 240 62.1
CsaV3_2G033200 Cucumis sativus L. HOM05D006697 ORTHO05D008161 9.8e-73 277.3 248 57.7
Ah.05g170350 Amaranthus hybridus HOM05D006697 ORTHO05D008161 2.2e-72 276.2 227 62.6
Sed0014406 Sechium edule HOM05D006697 ORTHO05D008161 2.2e-72 276.2 230 60.9
arahy.Tifrunner.gnm1.ann1.D2QDKL Arachis hypogaea HOM05D006697 ORTHO05D008161 4.8e-72 275.0 240 60.8
Ciclev10024137m.g Citrus clementina HOM05D006697 ORTHO05D008161 4.8e-72 275.0 221 63.8
COL.COLO4_05203 Corchorus olitorius HOM05D006697 ORTHO05D008161 4.8e-72 275.0 229 62.4
MBI04_g46123_MAGBIO Magnolia biondii HOM05D006697 ORTHO05D008161 4.8e-72 275.0 229 63.8
Ca_26167_v3 Cicer arietinum L. HOM05D006697 ORTHO05D008161 1.1e-71 273.9 244 60.7
ClCG11G008450 Citrullus lanatus HOM05D006697 ORTHO05D008161 1.4e-71 273.5 226 60.6
arahy.Tifrunner.gnm1.ann1.6HI5DG Arachis hypogaea HOM05D006697 ORTHO05D008161 2.4e-71 272.7 247 59.5
arahy.Tifrunner.gnm1.ann1.L3LJ1W Arachis hypogaea HOM05D006697 ORTHO05D008161 2.4e-71 272.7 247 59.5
Duzib213G0772 Durio zibethinus HOM05D006697 ORTHO05D008161 2.4e-71 272.7 224 63.8
Cpa.g.sc21.84 Carica papaya HOM05D006697 ORTHO05D008161 3.1e-71 272.3 224 61.6
HanXRQChr08g0227531 Helianthus annuus HOM05D006697 ORTHO05D008161 5.4e-71 271.6 232 58.6
Lj3g0000289 Lotus japonicus HOM05D006697 ORTHO05D008161 5.4e-71 271.6 247 59.9
PGR044G1078 Punica granatum HOM05D006697 ORTHO05D008161 9.1e-71 270.8 226 62.4
Medtr2g010410 Medicago truncatula HOM05D006697 ORTHO05D008161 1.2e-70 270.4 224 62.1
Gorai.009G352800 Gossypium raimondii HOM05D006697 ORTHO05D008161 2.7e-70 269.2 249 59.0
Gohir.D05G329400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 3.5e-70 268.9 249 59.0
AL1G24400 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 1.7e-69 266.5 237 57.8
Haze_13956 Corylus avellana HOM05D006697 ORTHO05D008161 1.7e-69 266.5 232 61.6
FAN20G2680 Fragaria x ananassa HOM05D006697 ORTHO05D008161 3.8e-69 265.4 223 63.2
THA.LOC104814608 Tarenaya hassleriana HOM05D006697 ORTHO05D008161 8.5e-69 264.2 229 60.3
Aa31LG2G660 Aethionema arabicum HOM05D006697 ORTHO05D008161 2.5e-68 262.7 247 56.3
Sopen06g023040 Solanum pennellii HOM05D006697 ORTHO05D008161 2.5e-68 262.7 234 57.3
PGR044G1872 Punica granatum HOM05D006697 ORTHO05D008161 3.2e-68 262.3 226 60.6
PGSC0003DMG400033140 Solanum tuberosum HOM05D006697 ORTHO05D008161 3.2e-68 262.3 232 57.3
MD05G1003900 Malus domestica HOM05D006697 ORTHO05D008161 9.4e-68 260.8 196 66.8
CARHR013100 Cardamine hirsuta HOM05D006697 ORTHO05D008161 2.1e-67 259.6 238 56.7
Peaxi162Scf00818g00536 Petunia axillaris HOM05D006697 ORTHO05D008161 2.1e-67 259.6 225 59.6
Sp1g11350 Schrenkiella parvula HOM05D006697 ORTHO05D008161 2.1e-67 259.6 240 55.8
Solyc06g064560.4 Solanum lycopersicum HOM05D006697 ORTHO05D008161 3.6e-67 258.8 234 57.7
Thhalv10008579m.g Eutrema salsugineum HOM05D006697 ORTHO05D008161 4.7e-67 258.5 240 54.6
vmacro17835 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.0e-66 257.3 236 59.3
AT1G12790 Arabidopsis thaliana HOM05D006697 ORTHO05D008161 6.8e-66 254.6 237 56.1
vmacro14431 Vaccinium macrocarpon HOM05D006697 ORTHO05D008161 1.2e-65 253.8 263 55.5
Carub.0001s1251 Capsella rubella HOM05D006697 ORTHO05D008161 2.0e-65 253.1 237 54.0
PSO170G3180 Papaver somniferum HOM05D006697 ORTHO05D008161 4.4e-65 251.9 229 57.6
SGA_v2.0_scaffold147G36299 Striga asiatica HOM05D006697 ORTHO05D008161 5.7e-65 251.5 212 59.9
CAN.G14.56 Capsicum annuum HOM05D006697 ORTHO05D008161 1.3e-64 250.4 221 60.2
Cc10_g08640 Coffea canephora HOM05D006697 ORTHO05D008161 1.1e-63 247.3 221 57.9
Hund16916 Selenicereus undatus HOM05D006697 ORTHO05D008161 4.1e-63 245.4 233 57.9
Os05g0588200 Oryza sativa ssp. japonica HOM05D006697 ORTHO05D008161 7.0e-63 244.6 226 58.4
SalBow7G2072 Salvia bowleyana HOM05D006697 ORTHO05D008161 2.7e-62 242.7 282 48.9
HPP92_021529 Vanilla planifolia HOM05D006697 ORTHO05D008161 5.0e-61 238.4 230 56.1
Manes.02G201500 Manihot esculenta HOM05D006697 ORTHO05D008161 8.6e-61 237.7 247 55.5
ECA247G0072 Erigeron canadensis HOM05D006697 ORTHO05D008161 1.1e-60 237.3 219 57.5
Zm00001eb345090 Zea mays HOM05D006697 ORTHO05D008161 1.1e-60 237.3 235 52.8
HPP92_021490 Vanilla planifolia HOM05D006697 ORTHO05D008161 1.5e-60 236.9 230 56.1
Nn8g39331 Nelumbo nucifera HOM05D006697 ORTHO05D008161 3.3e-60 235.7 230 56.1
TAR625G0361 Trochodendron aralioides HOM05D006697 ORTHO05D008161 1.6e-59 233.4 193 62.2
A06p08910 Brassica napus HOM05D000776 ORTHO05D008161 1.0e-58 230.7 239 49.8
BraA06t24084Z Brassica rapa HOM05D000776 ORTHO05D008161 4.0e-58 228.8 239 49.8
Nitab4.5_0002654g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 5.7e-57 224.9 251 50.6
arahy.Tifrunner.gnm1.ann1.3DZ399 Arachis hypogaea HOM05D006697 ORTHO05D008161 1.4e-55 220.3 215 57.2
Lj7C240T16 Lonicera japonica HOM05D006697 ORTHO05D008161 2.3e-53 213.0 222 54.1
BcaC05g25157 Brassica carinata HOM05D000776 ORTHO05D008161 3.9e-53 212.2 226 51.3
C05p10520 Brassica napus HOM05D000776 ORTHO05D008161 3.9e-53 212.2 226 51.3
BolC5t29798H Brassica oleracea HOM05D000776 ORTHO05D008161 1.1e-52 210.7 230 50.4
Glyma.12G014500 Glycine max HOM05D006697 ORTHO05D008161 1.2e-51 207.2 182 59.3
BcaC05g25114 Brassica carinata HOM05D006697 ORTHO05D008161 1.4e-50 203.8 227 49.8
SHI16724 Sapria himalayana HOM05D006697 ORTHO05D008161 3.1e-50 202.6 264 45.8
Nitab4.5_0010319g0040 Nicotiana tabacum HOM05D006697 ORTHO05D008161 3.7e-48 195.7 238 48.7
Rhsim08G0116200 Rhododendron simsii HOM05D006697 ORTHO05D008161 3.7e-48 195.7 264 45.8
unitig_32.g11220 Utricularia gibba HOM05D000486 ORTHO05D000375 4.9e-48 195.3 138 67.4
DCAR_016528 Daucus carota HOM05D006697 ORTHO05D008161 6.4e-48 194.9 186 52.2
CAN.G27.3 Capsicum annuum HOM05D006697 ORTHO05D008161 2.7e-46 189.5 197 52.3
MSTRG.1598 Avicennia marina HOM05D006697 ORTHO05D008161 6.6e-45 184.9 121 71.9
CSS0025148 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 8.6e-45 184.5 216 51.4
unitig_32.g11211 Utricularia gibba HOM05D006697 ORTHO05D008161 3.3e-44 182.6 124 70.2
CSS0011722 Camellia sinensis var. sinensis HOM05D006697 ORTHO05D008161 4.3e-44 182.2 215 51.6
arahy.Tifrunner.gnm1.ann1.K2UT7U Arachis hypogaea HOM05D006697 ORTHO05D008161 1.1e-42 177.6 123 72.4
ATR0083G058 Amborella trichopoda HOM05D006697 ORTHO05D008161 8.9e-42 174.5 183 53.0
arahy.Tifrunner.gnm1.ann1.9U8FPX Arachis hypogaea HOM05D006697 ORTHO05D008161 1.2e-41 174.1 193 53.4
Eucgr.F04072 Eucalyptus grandis HOM05D006697 ORTHO05D008161 2.0e-41 173.3 124 69.4
MELO3C029791.2 Cucumis melo HOM05D006697 ORTHO05D008161 1.3e-37 160.6 109 70.6
Gohir.A05G328400 Gossypium hirsutum HOM05D006697 ORTHO05D008161 2.5e-36 156.4 173 50.3
Lsat_1_v5_gn_1_24901 Lactuca sativa HOM05D006697 ORTHO05D008161 1.6e-35 153.7 158 50.6
Lalb_Chr01g0000751 Lupinus albus HOM05D006697 ORTHO05D008161 2.1e-35 153.3 155 52.9
SMO119G0513 Selaginella moellendorffii HOM05D006697 ORTHO05D008161 4.7e-27 125.6 216 35.6
arahy.Tifrunner.gnm1.ann1.GZG3VH Arachis hypogaea HOM05D006697 ORTHO05D008161 1.1e-26 124.4 162 46.3
Lalb_Chr01g0000761 Lupinus albus HOM05D006697 ORTHO05D008161 3.8e-24 115.9 79 70.9
Mapoly0068s0032 Marchantia polymorpha HOM05D006697 ORTHO05D008161 2.5e-20 103.2 220 29.1
AL1G24230 Arabidopsis lyrata HOM05D006697 ORTHO05D008161 3.4e-17 92.8 132 43.9
RcHm_v2.0_Chr6g0275321 Rosa chinensis HOM05D006697 ORTHO05D008161 1.1e-12 77.8 45 77.8
FAN20G1527 Fragaria x ananassa HOM05D006697 ORTHO05D205377 1.5e-09 67.4 76 51.3
Lj7A241T18 Lonicera japonica HOM05D006697 ORTHO05D008161 9.9e-09 64.7 43 67.4
Medtr2g451120 Medicago truncatula HOM05D006697 ORTHO05D008161 1.6e-06 57.4 57 50.9


User provided reference genes

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