Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G189800 Prunus persica HOM05D004198 ORTHO05D006470 0.0e+00 2084.7 1051 100.0
MD02G1105300 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1832.0 1052 86.4
MD02G1105000 Malus domestica HOM05D004198 ORTHO05D006470 0.0e+00 1790.0 1139 79.5
RcHm_v2.0_Chr2g0096481 Rosa chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1780.8 1053 83.6
FvH4_1g09640 Fragaria vesca HOM05D004198 ORTHO05D006470 0.0e+00 1768.8 1054 82.9
FAN26G2565 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1751.1 1073 81.3
FAN19G0627 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1748.8 1073 81.2
Duzib168G0708 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1674.8 1054 77.9
QL11p003422 Quercus lobata HOM05D004198 ORTHO05D006470 0.0e+00 1669.1 1055 78.0
Thecc.09G068000 Theobroma cacao HOM05D004198 ORTHO05D006470 0.0e+00 1667.9 1054 77.8
Cfa002929 Carpinus fangiana HOM05D004198 ORTHO05D006470 0.0e+00 1665.6 1055 78.4
Duzib150G0139 Durio zibethinus HOM05D004198 ORTHO05D006470 0.0e+00 1655.2 1054 77.0
Manes.16G088900 Manihot esculenta HOM05D004198 ORTHO05D006470 0.0e+00 1649.4 1054 77.2
TAR624G1053 Trochodendron aralioides HOM05D004198 ORTHO05D006470 0.0e+00 1644.0 1057 77.3
TWI63G0842 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 0.0e+00 1639.0 1054 76.9
CANSAT56G1757 Cannabis sativa HOM05D004198 ORTHO05D006470 0.0e+00 1638.2 1057 77.8
FAN28G0237 Fragaria x ananassa HOM05D004198 ORTHO05D006470 0.0e+00 1636.7 1063 77.8
Ciclev10007313m.g Citrus clementina HOM05D004198 ORTHO05D006470 0.0e+00 1634.8 1052 77.3
Gorai.010G094700 Gossypium raimondii HOM05D004198 ORTHO05D006470 0.0e+00 1630.5 1058 75.4
GSVIVG01014998001 Vitis vinifera HOM05D004198 ORTHO05D006470 0.0e+00 1630.2 1054 76.9
Cpa.g.sc82.44 Carica papaya HOM05D004198 ORTHO05D006470 0.0e+00 1625.5 1054 76.8
Hma1.2p1_0179F.1_g079100 Hydrangea macrophylla HOM05D004198 ORTHO05D006470 0.0e+00 1624.4 1055 76.2
Gohir.A06G082000 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1621.7 1058 75.2
Potri.006G134300 Populus trichocarpa HOM05D004198 ORTHO05D006470 0.0e+00 1621.7 1057 76.0
CiPaw.03G199300 Carya illinoinensis HOM05D004198 ORTHO05D006470 0.0e+00 1617.4 1055 75.7
Actinidia39606 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1600.5 1055 75.2
Sabra06G0105400 Salix brachista HOM05D004198 ORTHO05D006470 0.0e+00 1586.2 1120 71.6
Atru.chr7.1797 Acer truncatum HOM05D004198 ORTHO05D006470 0.0e+00 1585.1 1053 73.9
Glyma.13G115500 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1580.1 1055 75.4
Nn8g38508 Nelumbo nucifera HOM05D004198 ORTHO05D006470 0.0e+00 1579.3 1056 73.2
VMungo1215G1653 Vigna mungo HOM05D004198 ORTHO05D006470 0.0e+00 1576.2 1055 74.9
Lj4g0026986 Lotus japonicus HOM05D004198 ORTHO05D006470 0.0e+00 1575.5 1054 74.7
Phvul.003G126300 Phaseolus vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1574.3 1055 75.2
Lalb_Chr12g0200381 Lupinus albus HOM05D004198 ORTHO05D006470 0.0e+00 1561.2 1055 74.5
Medtr4g124470 Medicago truncatula HOM05D004198 ORTHO05D006470 0.0e+00 1560.0 1062 73.4
Glyma.17G044300 Glycine max HOM05D004198 ORTHO05D006470 0.0e+00 1553.5 1039 75.3
TPR.G12649 Trifolium pratense HOM05D004198 ORTHO05D006470 0.0e+00 1552.0 1056 73.3
arahy.Tifrunner.gnm1.ann1.54PPAU Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1548.1 1062 72.5
vmacro17070 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 0.0e+00 1546.9 1146 68.9
arahy.Tifrunner.gnm1.ann1.Q7P4IG Arachis hypogaea HOM05D004198 ORTHO05D006470 0.0e+00 1545.0 1062 72.4
Thhalv10024287m.g Eutrema salsugineum HOM05D004198 ORTHO05D006470 0.0e+00 1542.3 1056 72.3
Sp7g30900 Schrenkiella parvula HOM05D004198 ORTHO05D006470 0.0e+00 1538.1 1058 72.3
THA.LOC104804447 Tarenaya hassleriana HOM05D004198 ORTHO05D006470 0.0e+00 1535.8 1062 71.5
Carub.0007s0730 Capsella rubella HOM05D004198 ORTHO05D006470 0.0e+00 1533.9 1055 71.9
Aqoxy7G04190 Aquilegia oxysepala HOM05D004198 ORTHO05D006470 0.0e+00 1528.8 1055 71.7
AL7G18400 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 0.0e+00 1528.8 1055 72.0
ClCG03G014720 Citrullus lanatus HOM05D004198 ORTHO05D006470 0.0e+00 1528.1 1052 71.3
Sc14g0000910 Simmondsia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1523.1 1053 70.7
BolC1t00527H Brassica oleracea HOM05D004198 ORTHO05D006470 0.0e+00 1522.3 1056 71.6
C01p05470 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1521.5 1056 71.5
MBI13_g01654_MAGBIO Magnolia biondii HOM05D004198 ORTHO05D006470 0.0e+00 1520.0 1061 71.7
AT4G33150 Arabidopsis thaliana HOM05D004198 ORTHO05D006470 0.0e+00 1519.2 1056 71.5
MELO3C015556.2 Cucumis melo HOM05D004198 ORTHO05D006470 0.0e+00 1517.7 1052 70.8
Oeu021231.1 Olea europaea HOM05D004198 ORTHO05D006470 0.0e+00 1515.0 1041 71.5
CsaV3_1G041440 Cucumis sativus L. HOM05D004198 ORTHO05D006470 0.0e+00 1514.2 1052 70.8
Dinv25493 Davidia involucrata HOM05D004198 ORTHO05D006470 0.0e+00 1512.3 959 77.8
EL10Ac8g18953 Beta vulgaris HOM05D004198 ORTHO05D006470 0.0e+00 1507.7 1055 70.1
PSO135G0314 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1504.2 1059 71.4
PGR044G0871 Punica granatum HOM05D004198 ORTHO05D006470 0.0e+00 1504.2 1055 71.5
A01p05020 Brassica napus HOM05D004198 ORTHO05D006470 0.0e+00 1503.0 1057 71.1
Nitab4.5_0001114g0030 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1501.1 1053 70.8
AUR62028335 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1500.0 1055 70.0
Rhsim05G0001300 Rhododendron simsii HOM05D004198 ORTHO05D006470 0.0e+00 1498.4 1132 67.9
Sed0024058 Sechium edule HOM05D004198 ORTHO05D006470 0.0e+00 1497.6 1053 70.0
Solyc07g017610.3 Solanum lycopersicum HOM05D004198 ORTHO05D006470 0.0e+00 1496.5 1052 69.7
Nitab4.5_0000055g0100 Nicotiana tabacum HOM05D004198 ORTHO05D006470 0.0e+00 1495.7 1053 70.8
Sopen07g006460 Solanum pennellii HOM05D004198 ORTHO05D006470 0.0e+00 1489.6 1052 69.2
Eucgr.C03183 Eucalyptus grandis HOM05D004198 ORTHO05D006470 0.0e+00 1489.2 1045 71.8
Ca_21348_v3 Cicer arietinum L. HOM05D004198 ORTHO05D006470 0.0e+00 1485.7 1054 71.1
BraA01t00484Z Brassica rapa HOM05D004198 ORTHO05D006470 0.0e+00 1475.3 1059 70.7
Aa31sc786G10 Aethionema arabicum HOM05D004198 ORTHO05D006470 0.0e+00 1472.2 1096 68.2
Gohir.D06G081400 Gossypium hirsutum HOM05D004198 ORTHO05D006470 0.0e+00 1470.3 978 74.2
Migut.J00870 Erythranthe guttata HOM05D004198 ORTHO05D006470 0.0e+00 1468.4 1055 69.7
MSTRG.5977 Avicennia marina HOM05D004198 ORTHO05D006470 0.0e+00 1467.6 1054 68.5
Lsat_1_v5_gn_5_138341 Lactuca sativa HOM05D004198 ORTHO05D006470 0.0e+00 1466.1 1051 69.4
ECA240G2250 Erigeron canadensis HOM05D004198 ORTHO05D006470 0.0e+00 1458.7 1055 68.9
Hund08916 Selenicereus undatus HOM05D004198 ORTHO05D006470 0.0e+00 1454.9 1056 67.7
SalBow6G6057 Salvia bowleyana HOM05D004198 ORTHO05D006470 0.0e+00 1453.3 1054 68.5
AUR62025328 Chenopodium quinoa HOM05D004198 ORTHO05D006470 0.0e+00 1453.0 1056 68.3
BcaC09g52122 Brassica carinata HOM05D004198 ORTHO05D006470 0.0e+00 1451.8 1263 60.0
HanXRQChr03g0060011 Helianthus annuus HOM05D004198 ORTHO05D006470 0.0e+00 1432.2 1062 67.9
Peaxi162Scf00452g00120 Petunia axillaris HOM05D004198 ORTHO05D006470 0.0e+00 1424.1 1053 67.7
CSS0027728 Camellia sinensis var. sinensis HOM05D004198 ORTHO05D006470 0.0e+00 1414.4 946 74.1
ATR0099G092 Amborella trichopoda HOM05D004198 ORTHO05D006470 0.0e+00 1410.2 1063 67.3
HPP92_009326 Vanilla planifolia HOM05D004198 ORTHO05D006470 0.0e+00 1409.4 1060 66.5
Os02g0783700 Oryza sativa ssp. japonica HOM05D004198 ORTHO05D006470 0.0e+00 1407.9 1061 66.4
Actinidia33515 Actinidia chinensis HOM05D004198 ORTHO05D006470 0.0e+00 1325.5 855 76.7
unitig_22.g6576 Utricularia gibba HOM05D004198 ORTHO05D006470 0.0e+00 1292.3 1052 62.0
Cc00_g13770 Coffea canephora HOM05D004198 ORTHO05D006470 0.0e+00 1281.2 845 75.4
Haze_26080 Corylus avellana HOM05D004198 ORTHO05D006470 0.0e+00 1273.1 800 79.6
Psat4g019880 Pisum sativum HOM05D004198 ORTHO05D006470 0.0e+00 1252.7 851 73.1
Ah.09g228850 Amaranthus hybridus HOM05D004198 ORTHO05D006470 0.0e+00 1147.5 789 71.0
SGA_v2.0_scaffold31G12701 Striga asiatica HOM05D004198 ORTHO05D006470 0.0e+00 1103.2 958 60.2
Mapoly0072s0092 Marchantia polymorpha HOM05D004198 ORTHO05D006470 0.0e+00 1094.0 1078 53.6
PSO724G0393 Papaver somniferum HOM05D004198 ORTHO05D006470 0.0e+00 1083.9 790 69.5
SMO145G0289 Selaginella moellendorffii HOM05D004198 ORTHO05D006470 3.2e-302 1042.0 1058 51.5
Pp3c27_7000 Physcomitrium patens HOM05D004198 ORTHO05D006470 1.0e-292 1010.4 1070 50.6
Zm00001eb192910 Zea mays HOM05D004198 ORTHO05D006470 4.6e-277 958.4 775 62.1
COL.COLO4_21183 Corchorus olitorius HOM05D004198 ORTHO05D006470 4.4e-267 925.2 950 55.7
CAN.G86.12 Capsicum annuum HOM05D004198 ORTHO05D006470 1.4e-265 920.2 631 71.5
CDE05G0881 Ceratophyllum demersum HOM05D004198 ORTHO05D006470 3.6e-245 852.4 657 64.4
PGSC0003DMG401015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 8.3e-234 814.7 518 75.3
CARHR241180 Cardamine hirsuta HOM05D004198 ORTHO05D006470 3.5e-232 809.3 517 74.9
SEGI_08338 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.9e-214 750.4 698 56.4
C07p59520 Brassica napus HOM05D004198 ORTHO05D006470 5.2e-212 742.3 453 77.3
BolC7t46396H Brassica oleracea HOM05D004198 ORTHO05D006470 2.0e-211 740.3 453 76.8
BraA03t15222Z Brassica rapa HOM05D004198 ORTHO05D006470 2.2e-210 736.9 456 77.0
AL7G18410 Arabidopsis lyrata HOM05D004198 ORTHO05D006470 1.0e-207 728.0 470 73.8
EL10Ac8g18951 Beta vulgaris HOM05D004198 ORTHO05D006470 1.6e-205 720.7 471 73.2
Carub.0007s0731 Capsella rubella HOM05D004198 ORTHO05D006470 3.1e-204 716.5 496 69.2
A03p61830 Brassica napus HOM05D004198 ORTHO05D006470 1.7e-202 710.7 453 73.7
BolC7t46395H Brassica oleracea HOM05D004198 ORTHO05D006470 2.2e-202 710.3 458 73.1
Duzib168G0961 Durio zibethinus HOM05D004198 ORTHO05D006470 1.7e-199 700.7 449 74.8
TWI63G0157 Tripterygium wilfordii HOM05D004198 ORTHO05D006470 6.2e-197 692.2 452 72.6
Atru.chr7.1795 Acer truncatum HOM05D004198 ORTHO05D006470 1.2e-192 677.9 451 72.7
BraA03t15221Z Brassica rapa HOM05D004198 ORTHO05D006470 2.2e-186 657.1 462 68.8
PSO135G0878 Papaver somniferum HOM05D004198 ORTHO05D000955 7.4e-174 615.5 449 69.3
BcaNung02155 Brassica carinata HOM05D004198 ORTHO05D006470 7.2e-169 599.0 459 63.8
DCAR_011904 Daucus carota HOM05D004198 ORTHO05D006470 1.6e-168 597.8 428 68.2
C07p59510 Brassica napus HOM05D004198 ORTHO05D006470 1.6e-165 587.8 452 64.2
Lj4C923T7 Lonicera japonica HOM05D004198 ORTHO05D006470 8.2e-165 585.5 400 71.8
Ciclev10008705m.g Citrus clementina HOM05D004198 ORTHO05D006470 2.2e-157 560.8 367 73.8
PGSC0003DMG402015935 Solanum tuberosum HOM05D004198 ORTHO05D006470 4.1e-156 556.6 404 67.3
vmacro12815 Vaccinium macrocarpon HOM05D004198 ORTHO05D006470 2.9e-154 550.4 613 50.4
Thecc.09G068400 Theobroma cacao HOM05D004198 ORTHO05D006470 1.4e-151 541.6 366 70.5
Haze_26708 Corylus avellana HOM05D004198 ORTHO05D006470 1.8e-143 514.6 1109 32.9
A03p61840 Brassica napus HOM05D004198 ORTHO05D006470 5.0e-122 443.4 267 79.0
DCAR_000446 Daucus carota HOM05D004198 ORTHO05D006470 4.4e-118 430.3 286 73.4
Lj4A923G18 Lonicera japonica HOM05D004198 ORTHO05D006470 3.5e-115 420.6 238 84.5
PGSC0003DMG400002301 Solanum tuberosum HOM05D004198 ORTHO05D006470 5.4e-108 396.7 271 71.6
FAN26G1461 Fragaria x ananassa HOM05D004198 ORTHO05D006470 1.6e-104 385.2 213 86.9
Potri.006G134450 Populus trichocarpa HOM05D004198 ORTHO05D006470 3.6e-104 384.0 266 72.9
CAN.G86.10 Capsicum annuum HOM05D004198 ORTHO05D006470 6.8e-103 379.8 317 60.3
Sopen07g006480 Solanum pennellii HOM05D004198 ORTHO05D006470 1.1e-100 372.5 237 78.5
SEGI_06318 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 2.4e-100 371.3 238 76.9
PSO724G0241 Papaver somniferum HOM05D004198 ORTHO05D006470 1.6e-72 278.9 156 83.3
Zm00001eb257190 Zea mays HOM05D004198 ORTHO05D030652 4.8e-64 250.8 292 47.3
Cc00_g13780 Coffea canephora HOM05D004198 ORTHO05D015220 1.1e-63 249.6 210 58.6
PGSC0003DMG400002302 Solanum tuberosum HOM05D004198 ORTHO05D015220 4.9e-61 240.7 205 58.0
Prupe.6G271300 Prunus persica HOM05D004198 ORTHO05D015220 1.1e-49 203.0 110 96.4
Lj4A923T26 Lonicera japonica HOM05D004198 ORTHO05D006470 3.7e-48 198.0 169 64.5
RcHm_v2.0_Chr2g0169881 Rosa chinensis HOM05D004198 ORTHO05D006470 1.4e-47 196.1 156 62.8
ATR0721G130 Amborella trichopoda HOM05D004198 ORTHO05D006470 7.2e-44 183.7 122 68.0
SEGI_37264 Sequoiadendron giganteum HOM05D004198 ORTHO05D006470 1.2e-43 183.0 155 58.1
RcHm_v2.0_Chr2g0121231 Rosa chinensis HOM05D004198 ORTHO05D006470 2.7e-43 181.8 179 55.9
Prupe.6G271400 Prunus persica HOM05D004198 ORTHO05D015220 3.9e-42 177.9 97 95.9
Zm00001eb048050 Zea mays HOM05D004198 ORTHO05D030652 5.2e-34 151.0 137 54.0
Zm00001eb129620 Zea mays HOM05D004198 ORTHO05D030652 3.3e-33 148.3 137 54.0
CDE05G0275 Ceratophyllum demersum HOM05D004198 ORTHO05D015220 2.2e-32 145.6 105 65.7
RcHm_v2.0_Chr2g0121241 Rosa chinensis HOM05D004198 ORTHO05D347069 5.9e-30 137.5 96 67.7
SEGI_05824 Sequoiadendron giganteum HOM05D004198 ORTHO05D043385 1.7e-29 136.0 83 72.3
arahy.Tifrunner.gnm1.ann1.RG8FT8 Arachis hypogaea HOM05D005844 ORTHO05D007203 9.4e-28 130.2 85 69.4
RcHm_v2.0_Chr2g0169891 Rosa chinensis HOM05D004198 ORTHO05D340468 1.6e-27 129.4 96 64.6
MD02G1105200 Malus domestica HOM05D004198 ORTHO05D006470 3.1e-23 115.2 55 94.5
RcHm_v2.0_Chr5g0070481 Rosa chinensis HOM05D004198 ORTHO05D347121 9.1e-23 113.6 75 77.3
Solyc07g017675.1 Solanum lycopersicum HOM05D004198 ORTHO05D015220 1.4e-18 99.8 80 58.8
Sopen07g006500 Solanum pennellii HOM05D004198 ORTHO05D015220 3.0e-18 98.6 76 61.8
EL10Ac4g10130 Beta vulgaris HOM05D001013 ORTHO05D004597 2.0e-17 95.9 83 50.6
CAN.G86.11 Capsicum annuum HOM05D004198 ORTHO05D114955 3.4e-17 95.1 61 75.4
CANSAT25G3628 Cannabis sativa HOM05D004198 ORTHO05D043385 1.3e-16 93.2 58 69.0
EL10Ac4g10158 Beta vulgaris HOM05D001013 ORTHO05D016001 1.8e-15 89.4 56 66.1
Actinidia33514 Actinidia chinensis HOM05D004198 ORTHO05D015220 1.6e-14 86.3 79 57.0
Atru.ctg794.7 Acer truncatum HOM05D005285 ORTHO05D037890 7.7e-14 84.0 74 59.5
Zm00001eb129630 Zea mays HOM05D004198 ORTHO05D015220 1.9e-12 79.3 53 75.5
Atru.chr13.2215 Acer truncatum HOM05D005285 ORTHO05D037890 3.0e-10 72.0 74 52.7
TPR.G28245 Trifolium pratense HOM05D001159 ORTHO05D001712 4.0e-10 71.6 41 75.6
Solyc07g017670.3 Solanum lycopersicum HOM05D004198 ORTHO05D030652 2.8e-08 65.5 44 65.9
Zm00001eb048040 Zea mays HOM05D004198 ORTHO05D015220 1.4e-07 63.2 44 70.5
CDE05G2763 Ceratophyllum demersum HOM05D004198 ORTHO05D130465 7.0e-07 60.8 83 37.3
EL10Ac8g19732 Beta vulgaris HOM05D004198 ORTHO05D006470 3.5e-06 58.5 48 62.5
ECA236G2630 Erigeron canadensis HOM05D000366 ORTHO05D000437 7.8e-06 57.4 39 71.8


User provided reference genes

Program Settings