Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G158600 Prunus persica HOM05D004674 ORTHO05D007261 0.0e+00 1468.8 756 100.0
MD15G1256300 Malus domestica HOM05D004674 ORTHO05D007261 0.0e+00 1246.5 759 86.0
FAN26G2871 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1216.1 757 83.8
RcHm_v2.0_Chr2g0100861 Rosa chinensis HOM05D004674 ORTHO05D007261 0.0e+00 1208.7 755 83.2
FAN23G0750 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1186.0 767 81.6
QL06p035418 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1163.3 756 79.4
QL06p035429 Quercus lobata HOM05D004674 ORTHO05D007261 0.0e+00 1155.2 756 78.8
FAN19G2260 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1154.8 757 81.0
FAN28G0143 Fragaria x ananassa HOM05D004674 ORTHO05D007261 0.0e+00 1153.3 757 80.7
Cfa006896 Carpinus fangiana HOM05D004674 ORTHO05D007261 0.0e+00 1140.2 756 77.9
CiPaw.07G049300 Carya illinoinensis HOM05D004674 ORTHO05D007261 0.0e+00 1135.6 751 78.6
TAR376G0875 Trochodendron aralioides HOM05D004674 ORTHO05D007261 0.0e+00 1135.6 755 77.0
CANSAT01G1299 Cannabis sativa HOM05D004674 ORTHO05D007261 0.0e+00 1133.6 759 78.0
Haze_03856 Corylus avellana HOM05D004674 ORTHO05D007261 0.0e+00 1132.9 752 77.7
COL.COLO4_22030 Corchorus olitorius HOM05D004674 ORTHO05D007261 0.0e+00 1125.5 747 76.8
Gorai.007G201200 Gossypium raimondii HOM05D004674 ORTHO05D007261 0.0e+00 1119.8 747 76.7
Gohir.A11G182300 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1109.4 747 76.6
GSVIVG01018892001 Vitis vinifera HOM05D004674 ORTHO05D007261 0.0e+00 1108.2 756 76.1
Cpa.g.sc6.166 Carica papaya HOM05D004674 ORTHO05D007261 0.0e+00 1107.0 756 75.4
Duzib264G1222 Durio zibethinus HOM05D004674 ORTHO05D007261 0.0e+00 1106.3 747 75.8
Gohir.D11G189100 Gossypium hirsutum HOM05D004674 ORTHO05D007261 0.0e+00 1105.5 755 75.5
Sabra07G0018000 Salix brachista HOM05D004674 ORTHO05D007261 0.0e+00 1094.7 754 75.7
TWI09G0339 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 0.0e+00 1094.0 753 75.2
Potri.007G021000 Populus trichocarpa HOM05D004674 ORTHO05D007261 0.0e+00 1091.3 755 75.5
Ciclev10024970m.g Citrus clementina HOM05D004674 ORTHO05D007261 0.0e+00 1089.3 748 76.3
Eucgr.I02404 Eucalyptus grandis HOM05D004674 ORTHO05D007261 0.0e+00 1088.6 749 74.9
Sed0001139 Sechium edule HOM05D004674 ORTHO05D007261 0.0e+00 1087.8 754 73.9
Glyma.02G053800 Glycine max HOM05D004674 ORTHO05D007261 0.0e+00 1084.3 746 74.7
Migut.H02523 Erythranthe guttata HOM05D004674 ORTHO05D007261 0.0e+00 1082.8 761 74.6
Medtr8g076950 Medicago truncatula HOM05D004674 ORTHO05D007261 0.0e+00 1082.8 747 74.4
VMungo0251G2099 Vigna mungo HOM05D004674 ORTHO05D007261 0.0e+00 1082.8 747 74.4
Oeu019445.1 Olea europaea HOM05D004674 ORTHO05D007261 0.0e+00 1077.8 755 74.8
CsaV3_6G046560 Cucumis sativus L. HOM05D004674 ORTHO05D007261 0.0e+00 1075.1 750 73.9
SalBow8G1271 Salvia bowleyana HOM05D004674 ORTHO05D007261 5.2e-312 1073.5 750 74.0
Cc07_g09910 Coffea canephora HOM05D004674 ORTHO05D007261 1.6e-311 1072.4 750 73.2
TPR.G21548 Trifolium pratense HOM05D004674 ORTHO05D007261 1.6e-311 1072.4 747 73.8
SalBow8G5199 Salvia bowleyana HOM05D004674 ORTHO05D007261 6.2e-311 1070.5 750 73.9
THA.LOC104821303 Tarenaya hassleriana HOM05D004674 ORTHO05D007261 1.0e-310 1069.7 748 73.9
Atru.chr3.699 Acer truncatum HOM05D004674 ORTHO05D007261 1.3e-310 1069.3 746 74.4
Lj4g0022194 Lotus japonicus HOM05D004674 ORTHO05D007261 1.1e-309 1066.2 750 74.5
Nn5g29687 Nelumbo nucifera HOM05D004674 ORTHO05D007261 1.1e-309 1066.2 748 73.8
Lalb_Chr16g0391041 Lupinus albus HOM05D004674 ORTHO05D007261 1.5e-309 1065.8 756 73.7
ClCG01G019830 Citrullus lanatus HOM05D004674 ORTHO05D007261 6.2e-308 1060.4 790 69.9
FvH4_1g12760 Fragaria vesca HOM05D004674 ORTHO05D007261 6.2e-308 1060.4 655 84.1
PGSC0003DMG400015491 Solanum tuberosum HOM05D004674 ORTHO05D007261 6.2e-308 1060.4 749 73.0
Ca_22335_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 1.8e-307 1058.9 738 73.8
Nitab4.5_0000136g0250 Nicotiana tabacum HOM05D004674 ORTHO05D007261 2.4e-307 1058.5 782 70.6
Aqoxy5G01578 Aquilegia oxysepala HOM05D004674 ORTHO05D007261 2.0e-306 1055.4 759 71.1
Peaxi162Scf00008g03325 Petunia axillaris HOM05D004674 ORTHO05D007261 2.0e-306 1055.4 749 72.5
arahy.Tifrunner.gnm1.ann1.LKR1Y0 Arachis hypogaea HOM05D004674 ORTHO05D007261 2.6e-306 1055.0 758 73.4
CAN.G1019.6 Capsicum annuum HOM05D004674 ORTHO05D007261 2.6e-306 1055.0 758 72.2
CSS0017426 Camellia sinensis var. sinensis HOM05D004674 ORTHO05D007261 3.4e-306 1054.7 755 72.8
ECA232G2544 Erigeron canadensis HOM05D004674 ORTHO05D000001 1.0e-305 1053.1 750 73.2
Lsat_1_v5_gn_4_148020 Lactuca sativa HOM05D004674 ORTHO05D007261 1.0e-305 1053.1 748 72.2
Solyc02g062560.3 Solanum lycopersicum HOM05D004674 ORTHO05D007261 1.7e-305 1052.4 748 73.0
PGR119G1113 Punica granatum HOM05D004674 ORTHO05D007261 4.9e-305 1050.8 747 73.0
MSTRG.2485 Avicennia marina HOM05D004674 ORTHO05D007261 2.5e-304 1048.5 757 72.4
Sc16g0002550 Simmondsia chinensis HOM05D004674 ORTHO05D007261 2.5e-304 1048.5 749 72.5
Sopen02g013570 Solanum pennellii HOM05D004674 ORTHO05D007261 4.2e-304 1047.7 749 72.8
AL8G45110 Arabidopsis lyrata HOM05D004674 ORTHO05D007261 1.2e-303 1046.2 751 72.4
DCAR_017308 Daucus carota HOM05D004674 ORTHO05D007261 1.2e-303 1046.2 748 72.6
EL10As8g23909 Beta vulgaris HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 749 72.0
HanXRQChr09g0261191 Helianthus annuus HOM05D004674 ORTHO05D007261 1.6e-303 1045.8 756 72.5
AT5G66420 Arabidopsis thaliana HOM05D004674 ORTHO05D007261 2.7e-303 1045.0 751 72.8
arahy.Tifrunner.gnm1.ann1.SG067W Arachis hypogaea HOM05D004674 ORTHO05D007261 1.0e-302 1043.1 782 71.1
Thhalv10003695m.g Eutrema salsugineum HOM05D004674 ORTHO05D007261 3.0e-302 1041.6 750 73.1
Rhsim08G0121400 Rhododendron simsii HOM05D004674 ORTHO05D007261 3.9e-302 1041.2 795 68.6
Carub.0008s2809 Capsella rubella HOM05D004674 ORTHO05D007261 8.2e-300 1033.5 752 72.5
CARHR034750 Cardamine hirsuta HOM05D004674 ORTHO05D007261 1.1e-299 1033.1 752 71.8
PSO170G5809 Papaver somniferum HOM05D004674 ORTHO05D007261 1.8e-299 1032.3 752 70.5
HPP92_004908 Vanilla planifolia HOM05D004674 ORTHO05D007261 5.9e-298 1027.3 758 69.3
SGA_v2.0_scaffold12G06320 Striga asiatica HOM05D004674 ORTHO05D007261 1.3e-297 1026.2 757 71.6
Hund16446 Selenicereus undatus HOM05D004674 ORTHO05D007261 2.5e-296 1021.9 781 68.4
A07p17540 Brassica napus HOM05D004674 ORTHO05D007261 3.0e-294 1015.0 749 71.0
AUR62004091 Chenopodium quinoa HOM05D004674 ORTHO05D007261 3.9e-294 1014.6 769 68.8
BcaB02g10033 Brassica carinata HOM05D004674 ORTHO05D007261 8.8e-294 1013.4 751 70.7
Lj4A206G17 Lonicera japonica HOM05D004674 ORTHO05D007261 2.0e-293 1012.3 701 74.8
Nitab4.5_0001525g0030 Nicotiana tabacum HOM05D004674 ORTHO05D007261 7.4e-293 1010.4 711 73.1
BraA07t29474Z Brassica rapa HOM05D004674 ORTHO05D007261 1.3e-292 1009.6 749 70.6
C07p25500 Brassica napus HOM05D004674 ORTHO05D007261 8.2e-292 1006.9 754 70.6
BcaC06g34697 Brassica carinata HOM05D004674 ORTHO05D007261 1.1e-291 1006.5 754 70.4
BolC7t43070H Brassica oleracea HOM05D004674 ORTHO05D007261 5.3e-291 1004.2 756 70.5
Zm00001eb225760 Zea mays HOM05D004674 ORTHO05D007261 5.9e-290 1000.7 747 68.3
Os06g0472400 Oryza sativa ssp. japonica HOM05D004674 ORTHO05D007261 8.5e-289 996.9 747 69.1
unitig_60.g25534 Utricularia gibba HOM05D004674 ORTHO05D007261 2.5e-288 995.3 747 68.1
Phvul.003G256400 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 6.7e-286 987.3 656 76.4
Manes.02G097100 Manihot esculenta HOM05D004674 ORTHO05D007261 1.8e-283 979.2 747 69.5
ATR0568G133 Amborella trichopoda HOM05D004674 ORTHO05D007261 5.0e-281 971.1 709 70.8
Aa31LG1G14940 Aethionema arabicum HOM05D004674 ORTHO05D007261 1.1e-277 959.9 753 67.3
AUR62007603 Chenopodium quinoa HOM05D004674 ORTHO05D007261 7.7e-274 947.2 698 69.5
Sp2g30300 Schrenkiella parvula HOM05D004674 ORTHO05D007261 6.1e-271 937.6 659 72.8
SEGI_40838 Sequoiadendron giganteum HOM05D004674 ORTHO05D007261 8.3e-260 900.6 835 58.0
Pp3c20_8030 Physcomitrium patens HOM05D004674 ORTHO05D007261 1.9e-248 862.8 746 59.5
SMO367G0601 Selaginella moellendorffii HOM05D004674 ORTHO05D007261 7.0e-243 844.3 754 59.9
Actinidia35628 Actinidia chinensis HOM05D004674 ORTHO05D007261 6.2e-239 831.2 537 78.0
TAR376G0765 Trochodendron aralioides HOM05D004674 ORTHO05D007261 1.1e-235 820.5 713 62.3
Dinv40019 Davidia involucrata HOM05D004674 ORTHO05D007261 2.0e-229 799.7 500 81.4
TAR376G0038 Trochodendron aralioides HOM05D004674 ORTHO05D007261 8.3e-228 794.3 564 73.2
Thecc.01G030000 Theobroma cacao HOM05D004674 ORTHO05D007261 7.8e-226 787.7 553 72.9
Psat4g095640 Pisum sativum HOM05D004674 ORTHO05D007261 3.8e-220 768.8 604 67.4
TAR376G0961 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.6e-197 693.0 519 70.9
AagrBONN_evm.TU.Sc2ySwM_344.2833 Anthoceros agrestis HOM05D004674 ORTHO05D007261 3.0e-185 652.9 621 56.2
MELO3C007854.2 Cucumis melo HOM05D004674 ORTHO05D007261 2.5e-179 633.3 693 53.1
COL.COLO4_22029 Corchorus olitorius HOM05D004674 ORTHO05D007261 1.5e-173 614.0 442 71.7
Potri.005G120100 Populus trichocarpa HOM05D004674 ORTHO05D007261 6.5e-164 582.0 423 71.4
Atru.chr3.652 Acer truncatum HOM05D004674 ORTHO05D007261 1.2e-162 577.8 458 67.5
TWI09G0580 Tripterygium wilfordii HOM05D004674 ORTHO05D007261 7.0e-158 562.0 446 67.5
Gohir.A11G182500 Gossypium hirsutum HOM05D004674 ORTHO05D007261 2.8e-143 513.5 417 65.0
PSO407G0425 Papaver somniferum HOM05D004674 ORTHO05D007261 8.6e-140 501.9 434 59.0
PSO170G6195 Papaver somniferum HOM05D004674 ORTHO05D007261 1.2e-138 498.0 436 59.4
Actinidia19204 Actinidia chinensis HOM05D004674 ORTHO05D007261 2.8e-130 470.3 398 61.6
Gorai.007G201400 Gossypium raimondii HOM05D004674 ORTHO05D007261 7.0e-126 455.7 370 65.4
Gohir.D11G189150 Gossypium hirsutum HOM05D004674 ORTHO05D007261 3.0e-124 450.3 370 64.9
MELO3C010392.2 Cucumis melo HOM05D004674 ORTHO05D007261 4.0e-121 439.9 500 52.0
Glyma.16G133867 Glycine max HOM05D004674 ORTHO05D007261 2.2e-103 380.9 222 84.7
MD02G1142700 Malus domestica HOM05D004674 ORTHO05D007261 4.9e-103 379.8 261 78.5
Psat0s3062g0040 Pisum sativum HOM05D004674 ORTHO05D007261 2.0e-96 357.8 234 77.8
Duzib147G1548 Durio zibethinus HOM05D004674 ORTHO05D007261 1.1e-75 288.9 230 65.7
Zm00001eb098830 Zea mays HOM05D004674 ORTHO05D007261 8.2e-66 256.1 168 73.2
Zm00001eb124970 Zea mays HOM05D004674 ORTHO05D007261 2.4e-65 254.6 160 78.8
Phvul.003G256200 Phaseolus vulgaris HOM05D004674 ORTHO05D007261 2.8e-58 231.1 142 77.5
vmacro19462 Vaccinium macrocarpon HOM05D004674 ORTHO05D007261 1.8e-57 228.4 137 83.9
QL03p066021 Quercus lobata HOM05D004674 ORTHO05D029177 2.0e-56 224.9 295 46.8
Glyma.16G133933 Glycine max HOM05D004674 ORTHO05D007261 2.3e-52 211.5 156 66.7
TAR376G0549 Trochodendron aralioides HOM05D004674 ORTHO05D007261 2.0e-51 208.4 129 79.8
Ca_06503_v3 Cicer arietinum L. HOM05D000059 ORTHO05D000128 9.7e-51 206.1 230 52.2
Lj4C205T11 Lonicera japonica HOM05D004674 ORTHO05D007261 2.0e-48 198.4 311 45.0
Ca_07052_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 2.3e-44 184.9 160 60.6
Psat4g095680 Pisum sativum HOM05D004674 ORTHO05D007261 1.5e-43 182.2 105 87.6
MD02G1142800 Malus domestica HOM05D004674 ORTHO05D020551 5.7e-43 180.3 131 76.3
Ca_22377_v3 Cicer arietinum L. HOM05D004674 ORTHO05D007261 7.5e-43 179.9 143 65.0
Atru.chr3.653 Acer truncatum HOM05D004674 ORTHO05D007261 2.2e-42 178.3 95 88.4
Dinv40102 Davidia involucrata HOM05D004674 ORTHO05D020551 8.8e-36 156.4 128 64.8
SEGI_19277 Sequoiadendron giganteum HOM05D004674 ORTHO05D020551 1.8e-33 148.7 302 34.4
MELO3C028475.2 Cucumis melo HOM05D004674 ORTHO05D029177 1.1e-30 139.4 93 73.1
MD02G1142900 Malus domestica HOM05D004674 ORTHO05D007261 1.9e-30 138.7 147 58.5
Zm00001eb135660 Zea mays HOM05D004674 ORTHO05D007261 3.6e-29 134.4 86 75.6
arahy.Tifrunner.gnm1.ann1.TV0A1X Arachis hypogaea HOM05D004674 ORTHO05D007261 5.7e-27 127.1 114 57.9
FAN23G1600 Fragaria x ananassa HOM05D004674 ORTHO05D045629 2.8e-21 108.2 186 42.5
Psat2g002040 Pisum sativum HOM05D004674 ORTHO05D327579 3.7e-18 97.8 182 40.7
Zm00001eb334700 Zea mays HOM05D004674 ORTHO05D007261 6.4e-18 97.1 71 66.2
GSVIVG01017515001 Vitis vinifera HOM05D004674 ORTHO05D020551 9.2e-17 93.2 58 74.1
HanXRQChr08g0221331 Helianthus annuus HOM05D004674 ORTHO05D021509 7.8e-16 90.1 53 83.0
GSVIVG01005333001 Vitis vinifera HOM05D004674 ORTHO05D020551 1.0e-15 89.7 58 70.7
SGA_v2.0_scaffold48G18033 Striga asiatica HOM05D004674 ORTHO05D051422 3.0e-15 88.2 152 34.9
Gohir.A06G159466 Gossypium hirsutum HOM05D004674 ORTHO05D029177 5.0e-15 87.4 52 80.8
FAN14G4531 Fragaria x ananassa HOM05D004674 ORTHO05D020551 4.3e-14 84.3 76 65.8
Gorai.010G192800 Gossypium raimondii HOM05D004674 ORTHO05D029177 7.3e-14 83.6 52 78.8
Duzib248G0237 Durio zibethinus HOM05D004674 ORTHO05D020551 2.9e-10 71.6 44 75.0
MELO3C028160.2 Cucumis melo HOM05D004674 ORTHO05D029175 2.0e-08 65.5 36 88.9
Sabra05G0098800 Salix brachista HOM05D004674 ORTHO05D349121 3.5e-08 64.7 54 66.7
MELO3C001880.2 Cucumis melo HOM05D004674 ORTHO05D029175 7.3e-06 57.0 29 93.1
MELO3C028263.2 Cucumis melo HOM05D004674 ORTHO05D029175 7.3e-06 57.0 29 93.1


User provided reference genes

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