Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G127800 Prunus persica HOM05D004644 ORTHO05D005700 0.0e+00 1257.3 651 100.0
MD12G1109200 Malus domestica HOM05D004644 ORTHO05D005700 7.9e-243 844.0 601 73.7
RcHm_v2.0_Chr3g0470481 Rosa chinensis HOM05D004644 ORTHO05D005700 5.5e-204 714.9 660 58.8
FAN09G2255 Fragaria x ananassa HOM05D004644 ORTHO05D005700 3.6e-203 712.2 599 61.6
FvH4_6g16560 Fragaria vesca HOM05D004644 ORTHO05D005700 1.5e-201 706.8 652 60.1
FAN05G5479 Fragaria x ananassa HOM05D004644 ORTHO05D005700 2.6e-201 706.1 654 59.6
FAN05G3668 Fragaria x ananassa HOM05D004644 ORTHO05D005700 7.5e-201 704.5 652 59.8
FAN02G4433 Fragaria x ananassa HOM05D004644 ORTHO05D005700 1.1e-191 674.1 599 59.9
Cfa017634 Carpinus fangiana HOM05D004644 ORTHO05D005700 6.8e-186 654.8 603 59.0
QL07p043006 Quercus lobata HOM05D004644 ORTHO05D005700 1.1e-180 637.5 556 60.4
FAN14G1031 Fragaria x ananassa HOM05D004644 ORTHO05D005700 4.9e-176 622.1 624 56.9
Sed0011501 Sechium edule HOM05D004644 ORTHO05D005700 1.2e-174 617.5 592 55.6
Potri.006G122800 Populus trichocarpa HOM05D004644 ORTHO05D005700 1.6e-171 607.1 541 57.5
CSS0046520 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 8.1e-171 604.7 567 56.3
Sabra06G0097000 Salix brachista HOM05D004644 ORTHO05D005700 8.9e-170 601.3 565 57.0
Duzib093G1101 Durio zibethinus HOM05D004644 ORTHO05D005700 3.4e-169 599.4 567 57.3
Dinv35798 Davidia involucrata HOM05D004644 ORTHO05D005700 1.7e-168 597.0 573 55.8
MELO3C024470.2 Cucumis melo HOM05D004644 ORTHO05D005700 4.9e-168 595.5 588 56.0
Atru.chr8.1780 Acer truncatum HOM05D004644 ORTHO05D005700 2.1e-166 590.1 558 58.4
TWI53G0078 Tripterygium wilfordii HOM05D004644 ORTHO05D005700 3.5e-166 589.3 565 55.8
GSVIVG01033660001 Vitis vinifera HOM05D004644 ORTHO05D005700 7.8e-166 588.2 611 53.8
Phvul.001G180000 Phaseolus vulgaris HOM05D004644 ORTHO05D005700 5.1e-165 585.5 564 53.0
vmacro07303 Vaccinium macrocarpon HOM05D004644 ORTHO05D005700 8.6e-165 584.7 603 50.9
Gohir.A09G145300 Gossypium hirsutum HOM05D004644 ORTHO05D005700 4.7e-163 578.9 553 54.1
Rhsim03G0090100 Rhododendron simsii HOM05D004644 ORTHO05D005700 8.1e-163 578.2 589 53.3
CsaV3_6G039930 Cucumis sativus L. HOM05D004644 ORTHO05D005700 1.4e-162 577.4 598 54.5
Gohir.D09G141400 Gossypium hirsutum HOM05D004644 ORTHO05D005700 3.1e-162 576.2 565 54.7
ClCG04G009350 Citrullus lanatus HOM05D004644 ORTHO05D005700 1.5e-161 573.9 599 54.8
Gorai.006G162300 Gossypium raimondii HOM05D004644 ORTHO05D005700 1.5e-161 573.9 560 55.0
Actinidia28913 Actinidia chinensis HOM05D004644 ORTHO05D005700 2.0e-161 573.5 538 55.2
Lalb_Chr20g0112551 Lupinus albus HOM05D004644 ORTHO05D005700 8.4e-160 568.2 539 54.9
COL.COLO4_26937 Corchorus olitorius HOM05D004644 ORTHO05D005700 1.5e-156 557.4 585 51.8
Eucgr.A01659 Eucalyptus grandis HOM05D004644 ORTHO05D005700 2.8e-155 553.1 605 50.9
Lj1g0025951 Lotus japonicus HOM05D004644 ORTHO05D005700 1.8e-154 550.4 590 52.5
TAR633G1934 Trochodendron aralioides HOM05D004644 ORTHO05D005700 4.6e-150 535.8 548 50.9
TPR.G32811 Trifolium pratense HOM05D004644 ORTHO05D005700 1.8e-149 533.9 596 51.0
Lj2C119G5 Lonicera japonica HOM05D004644 ORTHO05D005700 3.9e-149 532.7 560 51.2
arahy.Tifrunner.gnm1.ann1.W70S5M Arachis hypogaea HOM05D004644 ORTHO05D005700 2.8e-147 526.6 580 50.5
Psat3g041720 Pisum sativum HOM05D004644 ORTHO05D005700 4.8e-147 525.8 552 50.5
Oeu045234.3 Olea europaea HOM05D004644 ORTHO05D005700 1.5e-145 520.8 532 49.6
PGR004G1497 Punica granatum HOM05D004644 ORTHO05D005700 1.1e-143 514.6 537 51.2
DCAR_009308 Daucus carota HOM05D004644 ORTHO05D005700 7.9e-142 508.4 532 50.2
VMungo1383G2434 Vigna mungo HOM05D004644 ORTHO05D005700 1.5e-140 504.2 561 48.3
Sopen09g003150 Solanum pennellii HOM05D004644 ORTHO05D005700 1.3e-136 491.1 568 48.6
Glyma.03G184600 Glycine max HOM05D004644 ORTHO05D005700 2.2e-136 490.3 560 48.4
MSTRG.5768 Avicennia marina HOM05D004644 ORTHO05D005700 6.5e-136 488.8 543 48.8
EL10Ac7g16657 Beta vulgaris HOM05D004644 ORTHO05D005700 6.5e-136 488.8 560 49.1
Haze_20518 Corylus avellana HOM05D004644 ORTHO05D005700 1.1e-135 488.0 411 63.0
Medtr7g102280 Medicago truncatula HOM05D004644 ORTHO05D005700 1.9e-135 487.3 561 47.6
THA.LOC104816355 Tarenaya hassleriana HOM05D004644 ORTHO05D005700 3.2e-135 486.5 566 47.3
Sc02g0001570 Simmondsia chinensis HOM05D004644 ORTHO05D005700 7.1e-135 485.3 547 49.2
Aqoxy2G01714 Aquilegia oxysepala HOM05D004644 ORTHO05D005700 3.5e-134 483.0 525 46.1
Ca_08912_v3 Cicer arietinum L. HOM05D004644 ORTHO05D005700 1.8e-133 480.7 602 45.3
Solyc09g008330.3 Solanum lycopersicum HOM05D004644 ORTHO05D005700 3.3e-132 476.5 541 48.6
AUR62026918 Chenopodium quinoa HOM05D004644 ORTHO05D005700 7.4e-132 475.3 580 46.7
CARHR209890 Cardamine hirsuta HOM05D004644 ORTHO05D005700 1.6e-131 474.2 567 47.3
AUR62042062 Chenopodium quinoa HOM05D004644 ORTHO05D005700 2.2e-131 473.8 573 48.9
ECA238G2777 Erigeron canadensis HOM05D004644 ORTHO05D005700 4.1e-130 469.5 535 45.6
Lj1g0007058 Lotus japonicus HOM05D004644 ORTHO05D005700 4.1e-130 469.5 580 45.0
Carub.0006s0226 Capsella rubella HOM05D004644 ORTHO05D005700 6.5e-128 462.2 568 46.1
BolC2t06098H Brassica oleracea HOM05D004644 ORTHO05D005700 5.5e-127 459.1 566 45.8
BcaB05g21841 Brassica carinata HOM05D004644 ORTHO05D005700 2.7e-126 456.8 551 45.0
BraA02t04761Z Brassica rapa HOM05D004644 ORTHO05D005700 4.6e-126 456.1 544 46.1
AL6G12810 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 1.1e-124 451.4 560 45.0
AT5G03450 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.5e-124 451.1 569 44.8
HanXRQChr14g0432961 Helianthus annuus HOM05D004644 ORTHO05D005700 2.8e-123 446.8 527 45.7
Sp6g39290 Schrenkiella parvula HOM05D004644 ORTHO05D005700 2.8e-123 446.8 574 44.9
PSO339G1979 Papaver somniferum HOM05D004644 ORTHO05D005700 4.5e-121 439.5 569 42.5
QL08p054123 Quercus lobata HOM05D004644 ORTHO05D005700 2.2e-120 437.2 552 44.2
C02p01080 Brassica napus HOM05D004644 ORTHO05D005700 1.6e-118 431.0 566 44.3
Manes.09G065000 Manihot esculenta HOM05D004644 ORTHO05D005700 6.1e-118 429.1 404 58.2
Lsat_1_v5_gn_2_30721 Lactuca sativa HOM05D004644 ORTHO05D005700 2.0e-116 424.1 560 44.5
Migut.J00643 Erythranthe guttata HOM05D004644 ORTHO05D005700 6.3e-115 419.1 478 50.2
Nitab4.5_0000578g0020 Nicotiana tabacum HOM05D004644 ORTHO05D005700 6.3e-115 419.1 566 43.5
Thhalv10013047m.g Eutrema salsugineum HOM05D004644 ORTHO05D005700 4.1e-114 416.4 561 43.9
SGA_v2.0_scaffold75G24833 Striga asiatica HOM05D004644 ORTHO05D005700 4.1e-114 416.4 570 43.3
Cpa.g.sc102.18 Carica papaya HOM05D004644 ORTHO05D005700 5.0e-112 409.5 424 51.2
Potri.010G228000 Populus trichocarpa HOM05D004644 ORTHO05D005700 3.2e-111 406.8 593 41.8
Thecc.05G069300 Theobroma cacao HOM05D004644 ORTHO05D005700 6.1e-110 402.5 396 57.3
Manes.07G133120 Manihot esculenta HOM05D004644 ORTHO05D005700 6.3e-107 392.5 511 43.8
SGA_v2.0_scaffold40G15487 Striga asiatica HOM05D004644 ORTHO05D005700 5.0e-104 382.9 575 39.3
CARHR209550 Cardamine hirsuta HOM05D004644 ORTHO05D005700 3.2e-103 380.2 538 39.8
MBI18_g00904_MAGBIO Magnolia biondii HOM05D004644 ORTHO05D005700 3.0e-101 373.6 495 42.2
Peaxi162Scf00722g00210 Petunia axillaris HOM05D004644 ORTHO05D005700 7.0e-98 362.5 508 41.5
Prupe.2G207900 Prunus persica HOM05D004644 ORTHO05D005700 3.8e-96 356.7 553 41.2
Aa31LG1G21710 Aethionema arabicum HOM05D004644 ORTHO05D005700 8.5e-96 355.5 473 44.6
Cc06_g04370 Coffea canephora HOM05D004644 ORTHO05D005700 9.4e-95 352.1 411 47.4
PGSC0003DMG401003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 8.0e-94 349.0 369 49.1
Os10g0545600 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 2.4e-90 337.4 531 38.0
Nitab4.5_0004476g0040 Nicotiana tabacum HOM05D004644 ORTHO05D005700 1.7e-88 331.3 479 43.8
PSO801G0701 Papaver somniferum HOM05D004644 ORTHO05D005700 3.8e-88 330.1 341 49.3
Zm00001eb393970 Zea mays HOM05D004644 ORTHO05D005700 3.8e-88 330.1 524 37.6
unitig_8.g4114 Utricularia gibba HOM05D004644 ORTHO05D005700 1.0e-85 322.0 637 33.0
Zm00001eb393990 Zea mays HOM05D004644 ORTHO05D005700 9.2e-82 308.9 523 36.1
Zm00001eb000650 Zea mays HOM05D004644 ORTHO05D005700 1.2e-81 308.5 529 34.2
CiPaw.09G171100 Carya illinoinensis HOM05D004644 ORTHO05D005700 3.6e-78 297.0 252 61.1
AL6G13290 Arabidopsis lyrata HOM05D004644 ORTHO05D005700 6.8e-77 292.7 354 43.8
Pp3c22_3930 Physcomitrium patens HOM05D004644 ORTHO05D005700 2.5e-71 274.2 657 30.1
Mapoly0033s0098 Marchantia polymorpha HOM05D004644 ORTHO05D005700 3.6e-70 270.4 595 30.9
ATR0763G089 Amborella trichopoda HOM05D004644 ORTHO05D005700 9.2e-66 255.8 316 45.9
MD01G1102300 Malus domestica HOM05D004644 ORTHO05D005700 9.2e-66 255.8 313 46.6
CSS0030902 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 3.4e-60 237.3 261 46.7
CDE02G0420 Ceratophyllum demersum HOM05D004644 ORTHO05D005700 3.4e-60 237.3 367 37.9
Actinidia26658 Actinidia chinensis HOM05D004644 ORTHO05D005700 5.8e-60 236.5 221 55.2
arahy.Tifrunner.gnm1.ann1.K7JVCN Arachis hypogaea HOM05D004644 ORTHO05D005700 8.1e-54 216.1 317 43.8
Prupe.7G127600 Prunus persica HOM05D004644 ORTHO05D005700 6.4e-51 206.5 154 64.3
Cpa.g.sc102.17 Carica papaya HOM05D004644 ORTHO05D005700 6.2e-46 189.9 132 66.7
Atru.chr8.1779 Acer truncatum HOM05D004644 ORTHO05D005700 1.8e-45 188.3 120 70.8
CBR_g31861 Chara braunii HOM05D004644 ORTHO05D005700 9.9e-44 182.6 691 25.2
Atru.chr8.1778 Acer truncatum HOM05D004644 ORTHO05D005700 1.7e-43 181.8 202 52.0
Lj3C987G12 Lonicera japonica HOM05D004644 ORTHO05D005700 8.7e-40 169.5 117 64.1
Haze_20519 Corylus avellana HOM05D004644 ORTHO05D005700 1.9e-39 168.3 159 59.7
PGSC0003DMG402003893 Solanum tuberosum HOM05D004644 ORTHO05D005700 4.3e-39 167.2 127 61.4
HanXRQChr13g0400851 Helianthus annuus HOM05D004644 ORTHO05D005700 4.2e-34 150.6 112 60.7
Sc02g0001560 Simmondsia chinensis HOM05D004644 ORTHO05D005700 1.2e-33 149.1 118 54.2
ECA233G2118 Erigeron canadensis HOM05D004644 ORTHO05D005700 2.1e-33 148.3 132 53.0
MCO15G141 Micromonas commoda HOM05D004644 ORTHO05D005700 4.6e-33 147.1 496 29.2
Cc06_g04380 Coffea canephora HOM05D004644 ORTHO05D005700 7.9e-33 146.4 88 68.2
Lsat_1_v5_gn_6_24500 Lactuca sativa HOM05D004644 ORTHO05D005700 1.0e-32 146.0 146 52.1
Lsat_1_v5_gn_6_24480 Lactuca sativa HOM05D004644 ORTHO05D005700 1.5e-31 142.1 104 61.5
CSS0001913 Camellia sinensis var. sinensis HOM05D004644 ORTHO05D005700 7.4e-31 139.8 117 53.8
COL.COLO4_26936 Corchorus olitorius HOM05D004644 ORTHO05D005700 2.9e-27 127.9 94 63.8
Glyma.19G185000 Glycine max HOM05D004644 ORTHO05D005700 2.9e-27 127.9 100 55.0
Nn2g13824 Nelumbo nucifera HOM05D004644 ORTHO05D005700 5.5e-26 123.6 152 47.4
MD01G1102200 Malus domestica HOM05D004644 ORTHO05D005700 2.3e-24 118.2 118 47.5
Sabra10G0176300 Salix brachista HOM05D004644 ORTHO05D005700 4.3e-23 114.0 127 45.7
HanXRQChr02g0051711 Helianthus annuus HOM05D004644 ORTHO05D005700 1.6e-22 112.1 77 61.0
MD12G1109100 Malus domestica HOM05D004644 ORTHO05D005700 3.1e-21 107.8 247 34.0
SEGI_40598 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.2e-20 105.9 86 52.3
PGR004G0361 Punica granatum HOM05D004644 ORTHO05D005700 4.5e-20 104.0 119 46.2
Os03g0108200 Oryza sativa ssp. japonica HOM05D004644 ORTHO05D005700 5.5e-18 97.1 85 44.7
PGR004G0952 Punica granatum HOM05D004644 ORTHO05D005700 5.5e-18 97.1 85 54.1
Atru.chr8.1774 Acer truncatum HOM05D004644 ORTHO05D005700 9.3e-18 96.3 71 56.3
PSO801G0041 Papaver somniferum HOM05D004644 ORTHO05D005700 7.9e-17 93.2 137 37.2
FvH4_7g08751 Fragaria vesca HOM05D004644 ORTHO05D005700 1.6e-14 85.5 92 43.5
ATR0763G245 Amborella trichopoda HOM05D004644 ORTHO05D005700 8.2e-14 83.2 69 49.3
PSO801G0518 Papaver somniferum HOM05D004644 ORTHO05D005700 2.6e-12 78.2 79 40.5
Sabra10G0175900 Salix brachista HOM05D004644 ORTHO05D005700 3.4e-12 77.8 96 41.7
SEGI_16111 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 3.4e-12 77.8 71 45.1
PSO339G3403 Papaver somniferum HOM05D004644 ORTHO05D005700 1.3e-11 75.9 90 36.7
SEGI_30494 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 2.9e-11 74.7 76 40.8
SEGI_09432 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.0e-11 73.9 69 46.4
SEGI_17091 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.0e-11 73.9 197 29.9
SEGI_20900 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 5.0e-11 73.9 69 46.4
Lj3C988T3 Lonicera japonica HOM05D004644 ORTHO05D005700 8.5e-11 73.2 50 72.0
Lj1g0014168 Lotus japonicus HOM05D004644 ORTHO05D007522 1.2e-09 69.3 54 61.1
ECA232G2196 Erigeron canadensis HOM05D004644 ORTHO05D005700 6.1e-09 67.0 56 53.6
SEGI_00616 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 6.1e-09 67.0 115 28.7
SEGI_22440 Sequoiadendron giganteum HOM05D004644 ORTHO05D005700 1.4e-08 65.9 40 57.5
Glyma.19G185100 Glycine max HOM05D004644 ORTHO05D005700 2.3e-08 65.1 44 65.9
Glyma.18G219501 Glycine max HOM05D000076 ORTHO05D005700 8.8e-08 63.2 63 52.4
AT5G03750 Arabidopsis thaliana HOM05D004644 ORTHO05D005700 1.1e-07 62.8 47 53.2
Lj3C988T4 Lonicera japonica HOM05D004644 ORTHO05D005700 2.2e-06 58.5 44 54.5
Glyma.07G162100 Glycine max HOM05D003568 ORTHO05D004104 4.8e-06 57.4 55 52.7


User provided reference genes

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