Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G125100 Prunus persica HOM05D005316 ORTHO05D006495 0.0e+00 1384.0 957 100.0
MD12G1106200 Malus domestica HOM05D005316 ORTHO05D006495 0.0e+00 1207.6 957 89.9
RcHm_v2.0_Chr3g0470921 Rosa chinensis HOM05D005316 ORTHO05D006495 0.0e+00 1080.5 953 83.6
Thecc.05G072100 Theobroma cacao HOM05D005316 ORTHO05D006495 9.7e-306 1053.5 931 82.8
FAN14G0140 Fragaria x ananassa HOM05D005316 ORTHO05D006495 2.8e-305 1052.0 955 82.3
FvH4_6g16900 Fragaria vesca HOM05D005316 ORTHO05D006495 1.1e-304 1050.0 955 82.3
Gohir.A04G069900 Gossypium hirsutum HOM05D005316 ORTHO05D006495 2.4e-304 1048.9 943 81.8
Actinidia26652 Actinidia chinensis HOM05D005316 ORTHO05D006495 4.1e-304 1048.1 952 81.2
Gohir.D04G108500 Gossypium hirsutum HOM05D005316 ORTHO05D006495 4.1e-304 1048.1 931 82.3
FAN05G5169 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.9e-303 1044.3 955 82.0
FAN05G1083 Fragaria x ananassa HOM05D005316 ORTHO05D006495 8.5e-302 1040.4 955 81.8
Gorai.009G412600 Gossypium raimondii HOM05D005316 ORTHO05D006495 1.1e-301 1040.0 931 82.2
FAN09G0678 Fragaria x ananassa HOM05D005316 ORTHO05D006495 3.6e-300 1035.0 955 81.6
Cpa.g.sc5.157 Carica papaya HOM05D005316 ORTHO05D006495 6.7e-299 1030.8 933 82.4
Duzib128G2040 Durio zibethinus HOM05D005316 ORTHO05D006495 1.3e-297 1026.5 952 80.7
Ciclev10010984m.g Citrus clementina HOM05D005316 ORTHO05D006495 4.8e-297 1024.6 952 80.1
Rhsim03G0088900 Rhododendron simsii HOM05D005316 ORTHO05D006495 1.4e-296 1023.1 967 76.4
Atru.chr8.1745 Acer truncatum HOM05D005316 ORTHO05D006495 2.2e-294 1015.8 949 80.8
Potri.006G121100 Populus trichocarpa HOM05D005316 ORTHO05D006495 2.5e-293 1012.3 956 77.8
Sabra06G0095300 Salix brachista HOM05D005316 ORTHO05D006495 5.5e-293 1011.1 956 79.5
CiPaw.09G002900 Carya illinoinensis HOM05D005316 ORTHO05D006495 2.1e-292 1009.2 943 80.3
TWI77G0675 Tripterygium wilfordii HOM05D005316 ORTHO05D006495 3.7e-289 998.4 937 80.6
Manes.09G050526 Manihot esculenta HOM05D005316 ORTHO05D006495 3.1e-288 995.3 937 78.9
CSS0008696 Camellia sinensis var. sinensis HOM05D005316 ORTHO05D006495 2.0e-287 992.6 952 68.5
Eucgr.K02435 Eucalyptus grandis HOM05D005316 ORTHO05D006495 3.5e-287 991.9 935 80.5
vmacro07322 Vaccinium macrocarpon HOM05D005316 ORTHO05D006495 7.7e-287 990.7 991 63.4
TAR369G0309 Trochodendron aralioides HOM05D005316 ORTHO05D006495 1.7e-286 989.6 953 78.5
CANSAT80G2075 Cannabis sativa HOM05D005316 ORTHO05D006495 3.8e-286 988.4 945 79.5
QL07p042170 Quercus lobata HOM05D005316 ORTHO05D006495 5.5e-285 984.6 1106 70.3
ClCG04G009490 Citrullus lanatus HOM05D005316 ORTHO05D006495 1.2e-284 983.4 946 78.4
CsaV3_6G040110 Cucumis sativus L. HOM05D005316 ORTHO05D006495 9.1e-280 967.2 947 77.5
MELO3C024484.2 Cucumis melo HOM05D005316 ORTHO05D006495 1.6e-279 966.5 947 77.4
COL.COLO4_26906 Corchorus olitorius HOM05D005316 ORTHO05D006495 5.9e-279 964.5 948 77.8
Nitab4.5_0003314g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 2.2e-278 962.6 938 77.8
Aqoxy1G00948 Aquilegia oxysepala HOM05D005316 ORTHO05D006495 8.5e-278 960.7 944 74.8
Nn6g35213 Nelumbo nucifera HOM05D005316 ORTHO05D006495 3.2e-277 958.7 931 76.5
PGR142G2834 Punica granatum HOM05D005316 ORTHO05D006495 5.5e-277 958.0 951 67.0
Peaxi162Scf00435g01012 Petunia axillaris HOM05D005316 ORTHO05D006495 7.2e-277 957.6 952 77.0
VMungo1383G0853 Vigna mungo HOM05D005316 ORTHO05D006495 2.8e-273 945.7 956 75.3
TPR.G12554 Trifolium pratense HOM05D005316 ORTHO05D006495 1.1e-272 943.7 953 77.3
Glyma.19G186600 Glycine max HOM05D005316 ORTHO05D006495 9.1e-272 940.6 952 77.2
Lalb_Chr01g0018571 Lupinus albus HOM05D005316 ORTHO05D006495 4.5e-271 938.3 957 76.7
Ca_08924_v3 Cicer arietinum L. HOM05D005316 ORTHO05D006495 2.2e-270 936.0 952 76.2
Sed0019607 Sechium edule HOM05D005316 ORTHO05D006495 9.4e-269 930.6 945 76.1
Medtr4g123597 Medicago truncatula HOM05D005316 ORTHO05D006495 3.6e-268 928.7 953 76.3
Glyma.03G186500 Glycine max HOM05D005316 ORTHO05D006495 1.0e-267 927.2 952 77.1
DCAR_020803 Daucus carota HOM05D005316 ORTHO05D006495 3.0e-267 925.6 953 75.2
GSVIVG01033690001 Vitis vinifera HOM05D005316 ORTHO05D006495 3.0e-267 925.6 935 77.0
PGSC0003DMG400025700 Solanum tuberosum HOM05D005316 ORTHO05D006495 5.2e-267 924.9 933 77.0
Cc06_g04580 Coffea canephora HOM05D005316 ORTHO05D006495 6.8e-267 924.5 936 77.2
Phvul.001G181500 Phaseolus vulgaris HOM05D005316 ORTHO05D006495 2.6e-266 922.5 955 76.1
arahy.Tifrunner.gnm1.ann1.731ZEV Arachis hypogaea HOM05D005316 ORTHO05D006495 2.2e-265 919.5 953 76.1
arahy.Tifrunner.gnm1.ann1.RNM8HY Arachis hypogaea HOM05D005316 ORTHO05D006495 4.1e-264 915.2 991 73.7
Nitab4.5_0002535g0010 Nicotiana tabacum HOM05D005316 ORTHO05D006495 7.0e-264 914.4 936 76.2
Haze_19439 Corylus avellana HOM05D005316 ORTHO05D006495 9.1e-264 914.1 953 65.7
Solyc10g039190.2 Solanum lycopersicum HOM05D005316 ORTHO05D006495 3.8e-262 908.7 933 75.9
Sopen10g012250 Solanum pennellii HOM05D005316 ORTHO05D006495 3.6e-260 902.1 933 75.7
THA.LOC104802568 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 3.0e-259 899.0 931 74.3
Dinv37343 Davidia involucrata HOM05D005316 ORTHO05D006495 1.5e-258 896.7 739 79.7
PSO063G2956 Papaver somniferum HOM05D005316 ORTHO05D006495 4.4e-258 895.2 948 66.8
Psat4g020280 Pisum sativum HOM05D005316 ORTHO05D006495 4.4e-258 895.2 952 74.9
SalBow3G2891 Salvia bowleyana HOM05D005316 ORTHO05D006495 2.2e-257 892.9 926 75.6
HanXRQChr13g0400681 Helianthus annuus HOM05D005316 ORTHO05D006495 3.7e-257 892.1 937 74.5
ECA233G4339 Erigeron canadensis HOM05D005316 ORTHO05D006495 1.4e-256 890.2 946 73.5
Carub.0003s2158 Capsella rubella HOM05D005316 ORTHO05D006495 1.8e-256 889.8 935 73.5
PSO339G4035 Papaver somniferum HOM05D005316 ORTHO05D006495 3.2e-256 889.0 939 68.6
Lsat_1_v5_gn_6_28620 Lactuca sativa HOM05D005316 ORTHO05D006495 5.4e-256 888.3 957 73.8
Aa31LG9G1930 Aethionema arabicum HOM05D005316 ORTHO05D006495 1.0e-254 884.0 936 71.9
Oeu056529.1 Olea europaea HOM05D005316 ORTHO05D006495 1.7e-254 883.2 952 73.9
AUR62043277 Chenopodium quinoa HOM05D005316 ORTHO05D006495 3.9e-254 882.1 964 69.8
Thhalv10024329m.g Eutrema salsugineum HOM05D005316 ORTHO05D006495 2.5e-253 879.4 949 72.6
Sp7g13750 Schrenkiella parvula HOM05D005316 ORTHO05D006495 3.3e-253 879.0 935 72.7
AL3G35650 Arabidopsis lyrata HOM05D005316 ORTHO05D006495 2.1e-252 876.3 936 71.7
THA.LOC104820227 Tarenaya hassleriana HOM05D005316 ORTHO05D006495 3.6e-252 875.5 931 73.4
EL10Ac7g16684 Beta vulgaris HOM05D005316 ORTHO05D006495 3.1e-251 872.5 940 71.5
SGA_v2.0_scaffold40G15467 Striga asiatica HOM05D005316 ORTHO05D006495 4.0e-251 872.1 978 61.2
MSTRG.5779 Avicennia marina HOM05D005316 ORTHO05D006495 5.2e-251 871.7 950 73.1
Lj1g0025750 Lotus japonicus HOM05D005316 ORTHO05D006495 5.8e-250 868.2 953 74.1
CARHR097490 Cardamine hirsuta HOM05D005316 ORTHO05D006495 9.2e-248 860.9 935 71.2
AT3G21540 Arabidopsis thaliana HOM05D005316 ORTHO05D006495 1.6e-247 860.1 938 70.5
AUR62026938 Chenopodium quinoa HOM05D005316 ORTHO05D006495 3.0e-246 855.9 963 69.9
Ah.15g091450 Amaranthus hybridus HOM05D005316 ORTHO05D006495 3.9e-246 855.5 946 70.4
A01p22070 Brassica napus HOM05D005316 ORTHO05D006495 3.1e-243 845.9 935 72.0
BraA01t02113Z Brassica rapa HOM05D005316 ORTHO05D006495 4.0e-243 845.5 935 72.0
MBI19_g03558_MAGBIO Magnolia biondii HOM05D005316 ORTHO05D006495 6.8e-243 844.7 972 50.7
CAN.G1038.14 Capsicum annuum HOM05D005316 ORTHO05D006495 2.0e-242 843.2 944 72.8
C01p27470 Brassica napus HOM05D005316 ORTHO05D006495 2.6e-242 842.8 935 71.8
BolC1t02686H Brassica oleracea HOM05D005316 ORTHO05D006495 7.5e-242 841.3 935 71.8
BcaC09g50240 Brassica carinata HOM05D005316 ORTHO05D006495 2.2e-241 839.7 935 71.7
PGSC0003DMG400013161 Solanum tuberosum HOM05D005316 ORTHO05D006495 8.3e-241 837.8 937 72.8
Sc20g0005710 Simmondsia chinensis HOM05D005316 ORTHO05D006495 1.3e-238 830.5 884 73.8
Lj3C1008T11 Lonicera japonica HOM05D005316 ORTHO05D006495 4.4e-234 815.5 819 80.2
Nitab4.5_0000108g0390 Nicotiana tabacum HOM05D005316 ORTHO05D006495 7.3e-229 798.1 954 70.5
CDE07G2059 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.4e-227 793.9 950 70.3
HPP92_025964 Vanilla planifolia HOM05D005316 ORTHO05D006495 2.9e-225 786.2 957 66.6
Migut.J00458 Erythranthe guttata HOM05D005316 ORTHO05D006495 1.0e-222 777.7 958 69.4
RcHm_v2.0_Chr7g0224541 Rosa chinensis HOM05D005316 ORTHO05D006495 2.5e-221 773.1 922 68.1
SHI18788 Sapria himalayana HOM05D005316 ORTHO05D006495 2.8e-220 769.6 864 73.5
unitig_578.g15787 Utricularia gibba HOM05D005316 ORTHO05D006495 3.4e-218 762.7 954 67.1
ATR0661G280 Amborella trichopoda HOM05D005316 ORTHO05D006495 2.2e-217 760.0 946 65.2
CAN.G363.3 Capsicum annuum HOM05D005316 ORTHO05D006495 3.8e-217 759.2 1020 60.7
Os03g0151700 Oryza sativa ssp. japonica HOM05D005316 ORTHO05D006495 1.1e-203 714.5 936 65.1
BcaC06g32938 Brassica carinata HOM05D005316 ORTHO05D006495 2.6e-186 656.8 946 55.5
SEGI_01067 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 9.7e-181 638.3 867 64.8
Zm00001eb004160 Zea mays HOM05D005316 ORTHO05D006495 2.5e-176 623.6 710 65.6
SMO144G0213 Selaginella moellendorffii HOM05D005316 ORTHO05D006495 6.3e-172 609.0 945 58.4
Mapoly0021s0013 Marchantia polymorpha HOM05D005316 ORTHO05D006495 2.0e-165 587.4 958 58.1
Pp3c24_9020 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.3e-156 558.1 962 55.0
Pp3c24_9070 Physcomitrium patens HOM05D005316 ORTHO05D006495 1.3e-156 558.1 962 55.0
CBR_g3060 Chara braunii HOM05D005316 ORTHO05D006495 1.7e-153 547.7 980 58.0
AagrBONN_evm.TU.Sc2ySwM_344.3757 Anthoceros agrestis HOM05D005316 ORTHO05D006495 6.5e-153 545.8 955 55.7
FAN02G2889 Fragaria x ananassa HOM05D005316 ORTHO05D006495 5.6e-136 489.6 596 67.6
CDE06G1287 Ceratophyllum demersum HOM05D005316 ORTHO05D006495 1.6e-130 471.5 643 46.5
RcHm_v2.0_Chr2g0174151 Rosa chinensis HOM05D005316 ORTHO05D006495 5.6e-128 463.0 590 48.1
Lalb_Chr20g0112451 Lupinus albus HOM05D005316 ORTHO05D006495 6.0e-106 389.8 320 65.0
Cre10.g438700 Chlamydomonas reinhardtii HOM05D005316 ORTHO05D006495 1.9e-104 384.8 952 47.8
MCO12G069 Micromonas commoda HOM05D005316 ORTHO05D006495 1.0e-97 362.5 955 41.5
PRCOL_00001463 Prasinoderma coloniale HOM05D005316 ORTHO05D006495 1.6e-66 258.8 724 42.3
Gohir.A13G089800 Gossypium hirsutum HOM05D005316 ORTHO05D006495 1.3e-55 222.6 180 63.3
Psat3g110240 Pisum sativum HOM05D005316 ORTHO05D017863 2.1e-50 205.3 135 74.8
Psat7g226920 Pisum sativum HOM05D003193 ORTHO05D006495 2.8e-47 194.9 127 75.6
Psat0s3791g0160 Pisum sativum HOM05D005316 ORTHO05D006495 1.0e-44 186.4 124 73.4
PGSC0003DMG400023254 Solanum tuberosum HOM05D005316 ORTHO05D006495 9.1e-38 163.3 188 50.0
Psat3g057760 Pisum sativum HOM05D005316 ORTHO05D006495 1.4e-33 149.4 125 60.8
Lalb_Chr20g0112411 Lupinus albus HOM05D005316 ORTHO05D006495 7.5e-32 143.7 126 61.9
Psat2g167720 Pisum sativum HOM05D005316 ORTHO05D006495 7.8e-29 133.7 102 66.7
SEGI_29002 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.0e-25 121.7 126 50.0
Lj3C1008T12 Lonicera japonica HOM05D005316 ORTHO05D006495 8.9e-25 120.2 84 75.0
Lalb_Chr20g0112421 Lupinus albus HOM05D005316 ORTHO05D006495 6.4e-23 114.0 77 75.3
Psat5g092920 Pisum sativum HOM05D000083 ORTHO05D001244 2.3e-20 105.5 88 61.4
SHI18789 Sapria himalayana HOM05D005316 ORTHO05D006495 8.6e-20 103.6 79 67.1
SEGI_05684 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 1.5e-19 102.8 82 61.0
Psat0s3199g0080 Pisum sativum HOM05D000071 ORTHO05D022797 7.3e-19 100.5 69 71.0
Sc24g0000540 Simmondsia chinensis HOM05D005316 ORTHO05D006495 6.2e-18 97.4 87 54.0
PGSC0003DMG400013159 Solanum tuberosum HOM05D005316 ORTHO05D006495 1.2e-16 93.2 72 70.8
PGSC0003DMG400036928 Solanum tuberosum HOM05D005316 ORTHO05D006495 5.8e-16 90.9 154 45.5
SEGI_04707 Sequoiadendron giganteum HOM05D005316 ORTHO05D006495 3.5e-13 81.6 92 45.7
RcHm_v2.0_Chr7g0191911 Rosa chinensis HOM05D005316 ORTHO05D006495 2.3e-12 79.0 52 76.9
BcaB01g03760 Brassica carinata HOM05D000526 ORTHO05D000956 6.4e-07 60.8 140 25.7
Psat3g191240 Pisum sativum HOM05D005316 ORTHO05D006495 1.1e-06 60.1 60 56.7
Cfa003664 Carpinus fangiana HOM05D005316 ORTHO05D006495 1.4e-06 59.7 43 65.1
PGR142G1073 Punica granatum HOM05D000836 ORTHO05D000709 3.2e-06 58.5 138 31.9
Cc03_g10690 Coffea canephora HOM05D002943 ORTHO05D002685 4.1e-06 58.2 118 35.6
CANSAT78G1202 Cannabis sativa HOM05D000836 ORTHO05D000709 7.1e-06 57.4 136 26.5


User provided reference genes

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