Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G093800 Prunus persica HOM05D004426 ORTHO05D005417 0.0e+00 4140.5 2182 100.0
RcHm_v2.0_Chr3g0476141 Rosa chinensis HOM05D004426 ORTHO05D005417 0.0e+00 3444.8 2193 83.8
MD14G1040500 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 3416.7 2195 83.7
FvH4_6g20410 Fragaria vesca HOM05D004426 ORTHO05D005417 0.0e+00 3342.4 2193 81.0
FAN05G1531 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 3313.9 2220 79.9
FAN05G5173 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 3289.6 2246 78.6
FAN09G4366 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 3277.3 2255 78.4
FAN02G2855 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 3256.8 2265 77.7
QL07p036440 Quercus lobata HOM05D004426 ORTHO05D005417 0.0e+00 2806.2 2220 70.1
GSVIVG01020162001 Vitis vinifera HOM05D004426 ORTHO05D005417 0.0e+00 2770.7 2233 68.3
CANSAT64G0287 Cannabis sativa HOM05D004426 ORTHO05D005417 0.0e+00 2752.2 2214 68.3
Atru.chr8.1340 Acer truncatum HOM05D004426 ORTHO05D005417 0.0e+00 2749.2 2216 67.7
Cfa020044 Carpinus fangiana HOM05D004426 ORTHO05D005417 0.0e+00 2724.5 2222 68.7
Ciclev10010887m.g Citrus clementina HOM05D004426 ORTHO05D005417 0.0e+00 2696.0 2218 66.5
CiPaw.10G018400 Carya illinoinensis HOM05D004426 ORTHO05D005417 0.0e+00 2671.3 2232 67.7
Thecc.05G105900 Theobroma cacao HOM05D004426 ORTHO05D005417 0.0e+00 2659.4 2217 65.7
Manes.09G046200 Manihot esculenta HOM05D004426 ORTHO05D005417 0.0e+00 2650.9 2227 66.1
Potri.016G069100 Populus trichocarpa HOM05D004426 ORTHO05D005417 0.0e+00 2640.5 2220 66.5
Sabra16G0070000 Salix brachista HOM05D004426 ORTHO05D005417 0.0e+00 2583.5 2264 64.8
Gorai.009G393700 Gossypium raimondii HOM05D004426 ORTHO05D005417 0.0e+00 2581.2 2220 64.2
Dinv12344 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2576.2 2227 65.9
Glyma.02G195600 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2553.1 2224 63.6
COL.COLO4_29556 Corchorus olitorius HOM05D004426 ORTHO05D005417 0.0e+00 2543.1 2212 64.3
Lj5g0003460 Lotus japonicus HOM05D004426 ORTHO05D005417 0.0e+00 2535.0 2233 63.3
TWI74G0602 Tripterygium wilfordii HOM05D004426 ORTHO05D005417 0.0e+00 2524.2 2224 63.9
Glyma.10G082100 Glycine max HOM05D004426 ORTHO05D005417 0.0e+00 2516.9 2224 62.9
Lalb_Chr06g0172651 Lupinus albus HOM05D004426 ORTHO05D005417 0.0e+00 2515.3 2231 63.0
arahy.Tifrunner.gnm1.ann1.C5PQVK Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2496.8 2229 62.5
Ca_11691_v3 Cicer arietinum L. HOM05D004426 ORTHO05D005417 0.0e+00 2487.2 2224 62.6
Eucgr.A02578 Eucalyptus grandis HOM05D004426 ORTHO05D005417 0.0e+00 2484.9 2213 62.9
Actinidia37752 Actinidia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2478.7 2236 62.4
Phvul.007G267500 Phaseolus vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2470.7 2228 61.4
TAR369G0229 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2467.2 2328 61.0
arahy.Tifrunner.gnm1.ann1.S879XT Arachis hypogaea HOM05D004426 ORTHO05D005417 0.0e+00 2462.2 2229 61.9
TPR.G2812 Trifolium pratense HOM05D004426 ORTHO05D005417 0.0e+00 2421.0 2232 61.3
ClCG10G018280 Citrullus lanatus HOM05D004426 ORTHO05D005417 0.0e+00 2410.9 2211 62.1
MELO3C009545.2 Cucumis melo HOM05D004426 ORTHO05D005417 0.0e+00 2395.2 2181 61.7
Psat6g115600 Pisum sativum HOM05D004426 ORTHO05D005417 0.0e+00 2388.2 2266 60.3
CsaV3_3G038030 Cucumis sativus L. HOM05D004426 ORTHO05D005417 0.0e+00 2379.4 2207 61.7
Medtr1g056800 Medicago truncatula HOM05D004426 ORTHO05D005417 0.0e+00 2370.5 2235 60.6
Sed0007001 Sechium edule HOM05D004426 ORTHO05D005417 0.0e+00 2370.5 2207 60.6
PGR004G1788 Punica granatum HOM05D004426 ORTHO05D005417 0.0e+00 2335.8 2225 60.7
MD12G1041400 Malus domestica HOM05D004426 ORTHO05D005417 0.0e+00 2314.3 1374 86.3
Nn6g34673 Nelumbo nucifera HOM05D004426 ORTHO05D005417 0.0e+00 2285.0 2303 57.8
Cc06_g06650 Coffea canephora HOM05D004426 ORTHO05D005417 0.0e+00 2277.7 2216 59.6
Gohir.D04G091700 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2269.6 2030 62.6
Gohir.A04G053650 Gossypium hirsutum HOM05D004426 ORTHO05D005417 0.0e+00 2261.9 2030 62.0
PSO339G1314 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 2246.1 2267 58.1
Aqoxy1G00646 Aquilegia oxysepala HOM05D004426 ORTHO05D005417 0.0e+00 2232.2 2302 57.1
TAR375G1129 Trochodendron aralioides HOM05D004426 ORTHO05D005417 0.0e+00 2228.0 2235 58.3
PSO384G1970 Papaver somniferum HOM05D004426 ORTHO05D005417 0.0e+00 2225.3 2268 57.3
VMungo0720G0551 Vigna mungo HOM05D004426 ORTHO05D005417 0.0e+00 2213.7 2140 58.5
Dinv31767 Davidia involucrata HOM05D004426 ORTHO05D005417 0.0e+00 2188.3 1714 69.4
vmacro07479 Vaccinium macrocarpon HOM05D004426 ORTHO05D005417 0.0e+00 2178.7 2285 57.5
THA.LOC104816640 Tarenaya hassleriana HOM05D004426 ORTHO05D005417 0.0e+00 2159.4 2224 56.2
Sopen03g029610 Solanum pennellii HOM05D004426 ORTHO05D005417 0.0e+00 2134.8 2225 56.4
MSTRG.5892 Avicennia marina HOM05D004426 ORTHO05D005417 0.0e+00 2125.5 2221 55.2
Solyc03g020020.3 Solanum lycopersicum HOM05D004426 ORTHO05D005417 0.0e+00 2120.1 2225 56.1
Migut.J00694 Erythranthe guttata HOM05D004426 ORTHO05D005417 0.0e+00 2118.2 2247 55.1
Nitab4.5_0004363g0030 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 2111.3 2185 57.2
Thhalv10019873m.g Eutrema salsugineum HOM05D004426 ORTHO05D005417 0.0e+00 2103.6 2211 54.6
Nitab4.5_0001495g0100 Nicotiana tabacum HOM05D004426 ORTHO05D005417 0.0e+00 2085.5 2225 55.6
AT3G05680 Arabidopsis thaliana HOM05D004426 ORTHO05D005417 0.0e+00 2084.7 2216 54.4
AL3G16340 Arabidopsis lyrata HOM05D004426 ORTHO05D005417 0.0e+00 2080.4 2215 54.3
DCAR_020696 Daucus carota HOM05D004426 ORTHO05D005417 0.0e+00 2077.8 2214 55.4
EL10Ac5g11771 Beta vulgaris HOM05D004426 ORTHO05D005417 0.0e+00 2065.0 2184 54.8
A03p34260 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 2055.0 2203 53.9
C03p41680 Brassica napus HOM05D004426 ORTHO05D005417 0.0e+00 2053.9 2204 54.0
Peaxi162Scf00171g00133 Petunia axillaris HOM05D004426 ORTHO05D005417 0.0e+00 2051.9 2194 55.5
Oeu035645.2 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 2051.6 2222 54.8
Sc22g0002960 Simmondsia chinensis HOM05D004426 ORTHO05D005417 0.0e+00 2048.1 1925 59.8
Sp3g04560 Schrenkiella parvula HOM05D004426 ORTHO05D005417 0.0e+00 2041.9 2212 53.2
BcaB04g19244 Brassica carinata HOM05D004426 ORTHO05D005417 0.0e+00 2036.2 2211 53.7
Carub.0003s0502 Capsella rubella HOM05D004426 ORTHO05D005417 0.0e+00 2035.0 2216 53.4
BolC3t16451H Brassica oleracea HOM05D004426 ORTHO05D005417 0.0e+00 2026.9 2225 53.3
BraA03t12600Z Brassica rapa HOM05D004426 ORTHO05D005417 0.0e+00 2026.5 2219 53.3
CARHR080130 Cardamine hirsuta HOM05D004426 ORTHO05D005417 0.0e+00 2015.0 2214 52.8
FAN14G5903 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 2007.6 1456 76.4
Aa31LG5G16100 Aethionema arabicum HOM05D004426 ORTHO05D005417 0.0e+00 2003.8 2223 52.7
AUR62040133 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1967.6 2158 54.6
ECA233G4189 Erigeron canadensis HOM05D004426 ORTHO05D005417 0.0e+00 1960.7 2173 54.0
HanXRQChr13g0398531 Helianthus annuus HOM05D004426 ORTHO05D005417 0.0e+00 1959.5 2152 54.8
AUR62027347 Chenopodium quinoa HOM05D004426 ORTHO05D005417 0.0e+00 1940.2 2127 54.3
Ah.12g059670 Amaranthus hybridus HOM05D004426 ORTHO05D005417 0.0e+00 1915.6 2223 51.5
SGA_v2.0_scaffold115G32146 Striga asiatica HOM05D004426 ORTHO05D005417 0.0e+00 1885.9 2220 51.4
Haze_20160 Corylus avellana HOM05D004426 ORTHO05D005417 0.0e+00 1864.4 1423 69.0
Lsat_1_v5_gn_6_33801 Lactuca sativa HOM05D004426 ORTHO05D005417 0.0e+00 1864.0 2179 51.9
CSS0032246 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1817.4 1392 67.6
CSS0006601 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 0.0e+00 1816.6 1391 67.5
ATR0665G194 Amborella trichopoda HOM05D004426 ORTHO05D005417 0.0e+00 1805.0 2332 48.1
FAN09G0172 Fragaria x ananassa HOM05D004426 ORTHO05D005417 0.0e+00 1741.5 1350 72.4
HPP92_005908 Vanilla planifolia HOM05D004426 ORTHO05D005417 0.0e+00 1569.3 2213 46.9
Zm00001eb220020 Zea mays HOM05D004426 ORTHO05D005417 0.0e+00 1551.2 2258 44.9
Oeu036110.1 Olea europaea HOM05D004426 ORTHO05D005417 0.0e+00 1429.8 1250 60.2
unitig_578.g15811 Utricularia gibba HOM05D004426 ORTHO05D005417 0.0e+00 1325.5 2222 40.8
MBI03_g28304_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 0.0e+00 1313.5 1635 51.3
Cpa.g.sc104.21 Carica papaya HOM05D004426 ORTHO05D005417 0.0e+00 1212.6 1239 58.2
Duzib093G0840 Durio zibethinus HOM05D004426 ORTHO05D005417 0.0e+00 1179.1 1258 56.9
Lj1A1205G57 Lonicera japonica HOM05D004426 ORTHO05D005417 1.5e-306 1057.4 1382 50.1
Lj1A1205T55 Lonicera japonica HOM05D004426 ORTHO05D005417 5.8e-306 1055.4 815 69.2
SHI25008 Sapria himalayana HOM05D004426 ORTHO05D000002 3.5e-287 993.0 1115 48.7
Rhsim04G0136900 Rhododendron simsii HOM05D004426 ORTHO05D005417 2.1e-276 957.2 1306 46.9
Haze_20162 Corylus avellana HOM05D004426 ORTHO05D005417 2.2e-220 771.2 860 60.3
CDE07G0138 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 8.1e-199 699.5 968 47.2
Mapoly0014s0197 Marchantia polymorpha HOM05D004426 ORTHO05D005417 2.3e-193 681.4 2447 28.1
CAN.G861.37 Capsicum annuum HOM05D004426 ORTHO05D005417 4.4e-189 667.2 936 50.7
CSS0033092 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 9.6e-184 649.4 841 55.3
CSS0017834 Camellia sinensis var. sinensis HOM05D004426 ORTHO05D005417 1.1e-182 646.0 841 55.2
CDE04G2905 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 7.9e-178 629.8 486 66.3
BcaB04g19248 Brassica carinata HOM05D004426 ORTHO05D005417 1.1e-174 619.4 1058 42.2
MD12G1041200 Malus domestica HOM05D004426 ORTHO05D005417 6.2e-167 593.6 445 79.6
SEGI_22283 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 2.2e-148 531.9 1027 37.9
Pp3c22_17700 Physcomitrium patens HOM05D004426 ORTHO05D005417 1.0e-140 506.5 2232 27.3
SEGI_03524 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 9.4e-139 500.0 426 59.2
AagrBONN_evm.TU.Sc2ySwM_368.1933 Anthoceros agrestis HOM05D004426 ORTHO05D005417 3.6e-138 498.0 1372 29.2
Duzib093G0602 Durio zibethinus HOM05D004426 ORTHO05D005417 1.2e-133 483.0 342 73.7
Cpa.g.sc104.20 Carica papaya HOM05D004426 ORTHO05D005417 3.6e-122 444.9 892 38.0
Rhsim04G0099300 Rhododendron simsii HOM05D004426 ORTHO05D005417 8.0e-122 443.7 648 44.1
RcHm_v2.0_Chr3g0476171 Rosa chinensis HOM05D004426 ORTHO05D005417 4.0e-105 388.3 215 89.8
PGSC0003DMG400015284 Solanum tuberosum HOM05D004426 ORTHO05D005417 6.2e-98 364.4 280 65.4
CBR_g906 Chara braunii HOM05D004426 ORTHO05D005417 8.6e-92 344.0 1891 23.4
MBI03_g28305_MAGBIO Magnolia biondii HOM05D004426 ORTHO05D005417 3.4e-88 332.0 304 61.2
Dinv31766 Davidia involucrata HOM05D004426 ORTHO05D005417 1.8e-81 309.7 462 50.0
Psat0s2215g0200 Pisum sativum HOM05D004426 ORTHO05D005417 1.0e-76 293.9 331 50.8
CDE04G3616 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.7e-74 285.0 379 44.3
Psat6g150080 Pisum sativum HOM05D004426 ORTHO05D005417 1.1e-70 273.9 322 48.8
Actinidia03882 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.6e-69 270.0 164 84.1
Oeu036109.3 Olea europaea HOM05D004426 ORTHO05D005417 1.3e-60 240.4 460 44.3
CDE07G0146 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 4.3e-59 235.3 153 77.1
Psat2g116240 Pisum sativum HOM05D004426 ORTHO05D005417 5.8e-56 224.9 236 57.6
Os03g0554900 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.7e-55 223.4 691 37.0
TPR.G15240 Trifolium pratense HOM05D004426 ORTHO05D005417 1.4e-54 220.3 252 60.3
Psat2g147520 Pisum sativum HOM05D001362 ORTHO05D001310 1.4e-46 193.7 136 67.6
Psat2g053520 Pisum sativum HOM05D004426 ORTHO05D005417 3.2e-46 192.6 331 39.9
Psat2g116200 Pisum sativum HOM05D004426 ORTHO05D005417 2.7e-45 189.5 180 61.7
Actinidia03991 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.3e-42 180.6 112 81.2
Os03g0554950 Oryza sativa ssp. japonica HOM05D004426 ORTHO05D005417 1.8e-41 176.8 208 47.1
Actinidia03883 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.6e-37 163.7 546 28.9
CDE04G0059 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 3.9e-36 159.1 337 37.1
CDE04G2111 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.8e-33 150.2 222 40.1
Psat0s2215g0120 Pisum sativum HOM05D004426 ORTHO05D005417 4.1e-33 149.1 129 60.5
Psat5g196200 Pisum sativum HOM05D004426 ORTHO05D005417 4.8e-26 125.6 128 59.4
Actinidia03993 Actinidia chinensis HOM05D004426 ORTHO05D005417 5.3e-25 122.1 103 69.9
SHI25011 Sapria himalayana HOM05D000023 ORTHO05D000014 8.5e-23 114.8 68 77.9
Actinidia03885 Actinidia chinensis HOM05D004426 ORTHO05D005417 6.3e-18 98.6 71 76.1
CDE07G2012 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 1.4e-17 97.4 415 30.8
arahy.Tifrunner.gnm1.ann1.71A9RU Arachis hypogaea HOM05D004426 ORTHO05D005417 1.6e-16 94.0 76 73.7
BNapus_Darmor_BZH_scaffold_118p00130 Brassica napus HOM05D004426 ORTHO05D005417 2.9e-15 89.7 195 36.4
CDE04G1213 Ceratophyllum demersum HOM05D004426 ORTHO05D005417 2.5e-14 86.7 240 37.1
Mapoly0074s0069 Marchantia polymorpha HOM05D004426 ORTHO05D005417 5.2e-12 79.0 133 31.6
Psat5g133160 Pisum sativum HOM05D004426 ORTHO05D005417 2.0e-11 77.0 128 42.2
Psat5g196160 Pisum sativum HOM05D004426 ORTHO05D005417 2.6e-11 76.6 78 56.4
Psat5g098480 Pisum sativum HOM05D004426 ORTHO05D005417 1.7e-10 73.9 117 41.9
Psat2g137560 Pisum sativum HOM05D004426 ORTHO05D005417 4.1e-09 69.3 113 44.2
arahy.Tifrunner.gnm1.ann1.U6LB1L Arachis hypogaea HOM05D046571 ORTHO05D038823 3.5e-08 66.2 63 63.5
ECA233G4409 Erigeron canadensis HOM05D004426 ORTHO05D005417 4.5e-08 65.9 59 64.4
Hund10806 Selenicereus undatus HOM05D008000 ORTHO05D010275 5.9e-08 65.5 65 50.8
Hund10805 Selenicereus undatus HOM05D001165 ORTHO05D000006 1.0e-07 64.7 45 68.9
SHI25001 Sapria himalayana HOM05D004426 ORTHO05D005417 1.3e-07 64.3 59 52.5
Actinidia03992 Actinidia chinensis HOM05D004426 ORTHO05D005417 2.2e-07 63.5 78 42.3
Actinidia03884 Actinidia chinensis HOM05D004426 ORTHO05D005417 1.1e-06 61.2 140 35.0
SHI25003 Sapria himalayana HOM05D004426 ORTHO05D002750 2.5e-06 60.1 97 38.1
SEGI_20776 Sequoiadendron giganteum HOM05D004426 ORTHO05D005417 7.2e-06 58.5 41 61.0


User provided reference genes

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