Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G058400 Prunus persica HOM05D006106 ORTHO05D007662 6.6e-205 718.4 854 100.0
MD12G1080100 Malus domestica HOM05D006106 ORTHO05D007662 2.5e-164 583.6 852 92.3
FAN05G2558 Fragaria x ananassa HOM05D006106 ORTHO05D007662 4.2e-135 486.5 851 87.4
RcHm_v2.0_Chr3g0482651 Rosa chinensis HOM05D006106 ORTHO05D007662 1.7e-131 474.6 861 86.1
FvH4_6g24060 Fragaria vesca HOM05D006106 ORTHO05D007662 4.2e-127 459.9 819 88.4
GSVIVG01033271001 Vitis vinifera HOM05D006106 ORTHO05D007662 4.2e-111 406.8 830 83.6
Cfa016809 Carpinus fangiana HOM05D001739 ORTHO05D006605 1.8e-109 401.4 806 85.5
Haze_19847 Corylus avellana HOM05D006106 ORTHO05D007662 3.4e-108 397.1 828 74.8
CSS0036472 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 7.5e-108 396.0 819 82.9
Manes.08G051400 Manihot esculenta HOM05D006106 ORTHO05D007662 1.1e-106 392.1 813 84.0
QL07p000909 Quercus lobata HOM05D006106 ORTHO05D007662 1.6e-105 388.3 811 77.3
TWI74G1340 Tripterygium wilfordii HOM05D006106 ORTHO05D007662 2.0e-105 387.9 803 81.4
Duzib128G0400 Durio zibethinus HOM05D006106 ORTHO05D007662 2.7e-105 387.5 813 83.5
Lj1g0017753 Lotus japonicus HOM05D006106 ORTHO05D007662 7.7e-105 386.0 819 83.9
CSS0045921 Camellia sinensis var. sinensis HOM05D006106 ORTHO05D007662 1.0e-104 385.6 810 83.0
Ciclev10004305m.g Citrus clementina HOM05D006106 ORTHO05D007662 8.6e-104 382.5 806 84.2
Nn7g36310 Nelumbo nucifera HOM05D006106 ORTHO05D007662 3.6e-102 377.1 814 80.8
Potri.006G049900 Populus trichocarpa HOM05D006106 ORTHO05D007662 1.0e-101 375.6 825 74.3
Sabra06G0034800 Salix brachista HOM05D006106 ORTHO05D007662 3.7e-99 367.1 817 80.3
Migut.J01752 Erythranthe guttata HOM05D006106 ORTHO05D007662 1.8e-98 364.8 830 81.0
Atru.chr1.1113 Acer truncatum HOM05D006106 ORTHO05D007662 3.1e-98 364.0 807 82.3
Gorai.009G383700 Gossypium raimondii HOM05D006106 ORTHO05D007662 4.1e-98 363.6 836 80.5
Gorai.009G450600 Gossypium raimondii HOM05D006106 ORTHO05D007662 9.2e-98 362.5 849 79.7
ClCG10G015760 Citrullus lanatus HOM05D006106 ORTHO05D007662 1.6e-97 361.7 801 83.8
Cpa.g.sc224.2 Carica papaya HOM05D006106 ORTHO05D007662 5.9e-97 359.8 818 82.3
Sc13g0001690 Simmondsia chinensis HOM05D006106 ORTHO05D007662 2.3e-96 357.8 811 76.4
Dinv12500 Davidia involucrata HOM05D006106 ORTHO05D007662 8.6e-96 355.9 806 75.7
Glyma.03G136200 Glycine max HOM05D006106 ORTHO05D007662 8.6e-96 355.9 814 83.0
CsaV3_3G040680 Cucumis sativus L. HOM05D006106 ORTHO05D007662 2.5e-95 354.4 799 83.6
Phvul.001G131500 Phaseolus vulgaris HOM05D006106 ORTHO05D007662 5.6e-95 353.2 806 83.3
FAN14G5662 Fragaria x ananassa HOM05D006106 ORTHO05D007662 8.0e-94 349.4 851 77.3
MELO3C009803.2 Cucumis melo HOM05D006106 ORTHO05D007662 2.3e-93 347.8 809 82.1
DCAR_009064 Daucus carota HOM05D006106 ORTHO05D007662 1.5e-92 345.1 797 65.9
Sopen04g007960 Solanum pennellii HOM05D006106 ORTHO05D007662 3.4e-92 344.0 788 72.8
Aqoxy1G00233 Aquilegia oxysepala HOM05D006106 ORTHO05D007662 3.7e-91 340.5 791 83.3
Medtr7g091410 Medicago truncatula HOM05D006106 ORTHO05D007662 1.4e-90 338.6 815 81.7
Lju124C42G9 Lonicera japonica HOM05D006106 ORTHO05D007662 2.7e-89 334.3 818 69.6
Psat3g074120 Pisum sativum HOM05D006106 ORTHO05D007662 4.6e-89 333.6 805 75.3
SGA_v2.0_scaffold105G30404 Striga asiatica HOM05D001739 ORTHO05D006605 2.3e-88 331.3 811 65.5
TPR.G3692 Trifolium pratense HOM05D006106 ORTHO05D007662 3.0e-88 330.9 812 74.6
Eucgr.A02342 Eucalyptus grandis HOM05D006106 ORTHO05D007662 6.6e-88 329.7 745 63.0
AT2G41720 Arabidopsis thaliana HOM05D006106 ORTHO05D007662 1.9e-87 328.2 811 80.0
AL4G40030 Arabidopsis lyrata HOM05D006106 ORTHO05D007662 1.6e-86 325.1 809 72.9
PSO384G4415 Papaver somniferum HOM05D006106 ORTHO05D007662 1.6e-86 325.1 796 81.5
Thhalv10016262m.g Eutrema salsugineum HOM05D006106 ORTHO05D007662 2.1e-86 324.7 811 79.9
AUR62024458 Chenopodium quinoa HOM05D006106 ORTHO05D007662 2.8e-86 324.3 813 73.3
Actinidia39218 Actinidia chinensis HOM05D006106 ORTHO05D007662 4.7e-86 323.6 801 75.4
Gohir.A04G032500 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.8e-85 321.6 804 69.3
Hund24702 Selenicereus undatus HOM05D006106 ORTHO05D007662 2.3e-85 321.2 814 67.4
Lsat_1_v5_gn_9_30580 Lactuca sativa HOM05D006106 ORTHO05D007662 4.0e-85 320.5 765 82.9
AUR62026047 Chenopodium quinoa HOM05D006106 ORTHO05D007662 3.4e-84 317.4 823 68.7
Hma1.2p1_1041F.1_g251060 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 7.5e-84 316.2 789 70.8
Rhsim03G0026900 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.3e-83 315.5 882 51.8
Nitab4.5_0000586g0120 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.7e-83 315.1 823 62.3
HanXRQChr10g0296661 Helianthus annuus HOM05D006106 ORTHO05D007662 7.0e-82 309.7 773 81.8
Sp4g23970 Schrenkiella parvula HOM05D006106 ORTHO05D007662 9.2e-82 309.3 790 80.3
CARHR136820 Cardamine hirsuta HOM05D006106 ORTHO05D007662 1.2e-81 308.9 811 76.8
ECA247G0166 Erigeron canadensis HOM05D001739 ORTHO05D006605 7.8e-81 306.2 778 81.0
EL10Ac3g07098 Beta vulgaris HOM05D006106 ORTHO05D007662 1.3e-80 305.4 891 65.0
Aa31LG1G23740 Aethionema arabicum HOM05D006106 ORTHO05D007662 2.5e-79 301.2 830 61.6
Cc06_g17630 Coffea canephora HOM05D006106 ORTHO05D007662 2.5e-79 301.2 819 63.2
arahy.Tifrunner.gnm1.ann1.4I0CBR Arachis hypogaea HOM05D006106 ORTHO05D007662 9.5e-79 299.3 806 71.6
HPP92_011279 Vanilla planifolia HOM05D006106 ORTHO05D007662 1.6e-78 298.5 789 79.3
arahy.Tifrunner.gnm1.ann1.HSF0DX Arachis hypogaea HOM05D006106 ORTHO05D007662 2.8e-78 297.7 806 79.9
Ca_15068_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 3.4e-76 290.8 753 83.7
PGR004G1513 Punica granatum HOM05D006106 ORTHO05D007662 4.4e-76 290.4 793 80.3
Ah.04g151600 Amaranthus hybridus HOM05D006106 ORTHO05D007662 1.9e-74 285.0 847 66.6
C04p02890 Brassica napus HOM05D006106 ORTHO05D007662 2.4e-74 284.6 812 62.6
BolC4t21929H Brassica oleracea HOM05D006106 ORTHO05D007662 2.4e-74 284.6 812 62.6
A05p02440 Brassica napus HOM05D006106 ORTHO05D007662 3.5e-73 280.8 811 62.4
Gohir.D05G383800 Gossypium hirsutum HOM05D006106 ORTHO05D007662 6.0e-73 280.0 364 77.7
VMungo1383G2820 Vigna mungo HOM05D006106 ORTHO05D007662 6.0e-73 280.0 791 63.8
BraA05t19238Z Brassica rapa HOM05D006106 ORTHO05D007662 1.0e-72 279.3 812 68.0
PSO339G0809 Papaver somniferum HOM05D006106 ORTHO05D007662 1.3e-72 278.9 769 79.2
Sed0021985 Sechium edule HOM05D006106 ORTHO05D007662 5.2e-69 266.9 344 78.8
Peaxi162Scf00130g00324 Petunia axillaris HOM05D006106 ORTHO05D007662 5.8e-68 263.5 796 69.6
CAN.G676.31 Capsicum annuum HOM05D006106 ORTHO05D007662 9.9e-68 262.7 360 75.3
Gohir.D05G352101 Gossypium hirsutum HOM05D006106 ORTHO05D007662 5.4e-66 256.9 180 63.9
Oeu008911.1 Olea europaea HOM05D006106 ORTHO05D007662 2.1e-65 255.0 177 66.7
TAR623G1683 Trochodendron aralioides HOM05D006106 ORTHO05D007662 4.6e-65 253.8 357 75.6
ATR0188G017 Amborella trichopoda HOM05D006106 ORTHO05D007662 7.3e-63 246.5 770 74.9
CDE08G0810 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 1.1e-61 242.7 338 74.6
Thecc.05G152200 Theobroma cacao HOM05D006106 ORTHO05D007662 1.4e-61 242.3 681 89.1
CiPaw.10G034000 Carya illinoinensis HOM05D006106 ORTHO05D007662 9.0e-61 239.6 171 67.8
Hma1.2p1_1041F.1_g251050 Hydrangea macrophylla HOM05D006106 ORTHO05D007662 1.2e-60 239.2 170 62.4
vmacro07842 Vaccinium macrocarpon HOM05D006106 ORTHO05D007662 2.2e-59 235.0 149 67.1
QL07p000892 Quercus lobata HOM05D006106 ORTHO05D007662 2.4e-58 231.5 165 64.8
HPP92_011301 Vanilla planifolia HOM05D006106 ORTHO05D007662 4.2e-58 230.7 326 75.8
Carub.0004s2400 Capsella rubella HOM05D006106 ORTHO05D007662 9.3e-58 229.6 714 83.1
Zm00001eb325040 Zea mays HOM05D006106 ORTHO05D007662 2.1e-57 228.4 779 76.6
Lalb_Chr01g0017341 Lupinus albus HOM05D006106 ORTHO05D007662 7.8e-57 226.5 164 64.0
Glyma.19G138101 Glycine max HOM05D006106 ORTHO05D007662 5.1e-56 223.8 176 63.6
COL.COLO4_28304 Corchorus olitorius HOM05D006106 ORTHO05D007662 8.7e-56 223.0 163 63.8
Gohir.D05G352075 Gossypium hirsutum HOM05D006106 ORTHO05D007662 1.6e-54 218.8 155 67.1
Gohir.D05G383766 Gossypium hirsutum HOM05D006106 ORTHO05D007662 3.6e-54 217.6 155 66.5
Ca_08448_v3 Cicer arietinum L. HOM05D006106 ORTHO05D007662 6.2e-54 216.9 161 65.2
Nitab4.5_0009615g0030 Nicotiana tabacum HOM05D006106 ORTHO05D007662 2.4e-53 214.9 366 70.5
THA.LOC104804858 Tarenaya hassleriana HOM05D006106 ORTHO05D007662 1.5e-52 212.2 160 57.5
BcaNung06815 Brassica carinata HOM05D006106 ORTHO05D007662 2.9e-51 208.0 167 55.7
Nitab4.5_0009615g0040 Nicotiana tabacum HOM05D006106 ORTHO05D007662 1.5e-47 195.7 163 54.6
Solyc04g015950.3 Solanum lycopersicum HOM05D006106 ORTHO05D007662 4.3e-47 194.1 161 54.0
MBI17_g23175_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 1.2e-41 176.0 577 36.2
AagrBONN_evm.TU.Sc2ySwM_344.4225 Anthoceros agrestis HOM05D006106 ORTHO05D007662 3.1e-37 161.4 124 58.1
BcaC02g12786 Brassica carinata HOM05D000138 ORTHO05D007692 1.2e-36 159.5 115 60.0
Pp3c2_1940 Physcomitrium patens HOM05D006106 ORTHO05D007662 2.0e-36 158.7 127 56.7
Mapoly0043s0117 Marchantia polymorpha HOM05D006106 ORTHO05D007662 3.4e-36 157.9 130 56.2
TAR623G1698 Trochodendron aralioides HOM05D006106 ORTHO05D007662 6.5e-35 153.7 114 64.9
Os07g0213300 Oryza sativa ssp. japonica HOM05D006106 ORTHO05D007662 1.1e-31 142.9 142 41.5
Rhsim03G0025700 Rhododendron simsii HOM05D006106 ORTHO05D007662 2.4e-29 135.2 115 54.8
Gorai.003G091300 Gossypium raimondii HOM05D006106 ORTHO05D007662 2.0e-28 132.1 239 65.3
CDE08G0364 Ceratophyllum demersum HOM05D006106 ORTHO05D007662 3.4e-28 131.3 116 55.2
MBI17_g23173_MAGBIO Magnolia biondii HOM05D006106 ORTHO05D007662 1.0e-27 129.8 88 67.0
Rhsim03G0026800 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.0e-27 129.8 145 47.6
unitig_578.g15981 Utricularia gibba HOM05D006106 ORTHO05D007662 2.2e-27 128.6 121 51.2
Actinidia09323 Actinidia chinensis HOM05D001739 ORTHO05D006605 1.9e-26 125.6 107 57.9
CiPaw.10G033900 Carya illinoinensis HOM05D006106 ORTHO05D007662 3.6e-25 121.3 68 73.5
CBR_g50368 Chara braunii HOM05D006106 ORTHO05D007662 3.9e-24 117.9 121 47.1
Rhsim03G0026000 Rhododendron simsii HOM05D001739 ORTHO05D007662 6.3e-22 110.5 96 54.2
Rhsim03G0025500 Rhododendron simsii HOM05D006106 ORTHO05D007662 1.8e-21 109.0 89 55.1
MELO3C031816.2 Cucumis melo HOM05D006106 ORTHO05D007662 7.7e-20 103.6 85 60.0
COL.COLO4_28306 Corchorus olitorius HOM05D006106 ORTHO05D007662 3.2e-18 98.2 124 46.8
BcaNung06942 Brassica carinata HOM05D006106 ORTHO05D007662 7.9e-17 93.6 91 42.9
MELO3C030027.2 Cucumis melo HOM05D006106 ORTHO05D007662 3.0e-16 91.7 67 64.2
Gohir.D03G068901 Gossypium hirsutum HOM05D006106 ORTHO05D007662 7.7e-12 77.0 46 78.3
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 4.8e-06 57.8 78 38.5


User provided reference genes

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