Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G044400 Prunus persica HOM05D003266 ORTHO05D037429 5.9e-61 237.3 113 100.0
ECA232G0114 Erigeron canadensis HOM05D003266 ORTHO05D003718 6.2e-10 67.8 32 93.8
unitig_748.g8094 Utricularia gibba HOM05D003266 ORTHO05D003718 6.2e-10 67.8 32 93.8
vmacro18872 Vaccinium macrocarpon HOM05D003266 ORTHO05D003718 6.2e-10 67.8 49 65.3
Hund00661 Selenicereus undatus HOM05D003266 ORTHO05D003718 8.1e-10 67.4 32 93.8
Actinidia32711 Actinidia chinensis HOM05D003266 ORTHO05D003718 1.1e-09 67.0 32 90.6
arahy.Tifrunner.gnm1.ann1.MP8KIY Arachis hypogaea HOM05D003266 ORTHO05D003718 1.1e-09 67.0 33 90.9
Atru.chr1.3468 Acer truncatum HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Ah.01g021810 Amaranthus hybridus HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
ATR0705G157 Amborella trichopoda HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
AL3G29000 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
AT3G16260 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
MSTRG.22654 Avicennia marina HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
EL10Ac9g22044 Beta vulgaris HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
BcaB06g25715 Brassica carinata HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
BcaC05g28901 Brassica carinata HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
A05p33260 Brassica napus HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
C05p50250 Brassica napus HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
BolC5t33776H Brassica oleracea HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
BraA05t22151Z Brassica rapa HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
CANSAT80G0796 Cannabis sativa HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Carub.0003s1601 Capsella rubella HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
CARHR091470 Cardamine hirsuta HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Cpa.g.sc34.31 Carica papaya HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
CiPaw.01G233800 Carya illinoinensis HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
CDE05G0037 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
CDE05G0524 Ceratophyllum demersum HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
AUR62031873 Chenopodium quinoa HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
ClCG09G001800 Citrullus lanatus HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
MELO3C024265.2 Cucumis melo HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
CsaV3_7G033540 Cucumis sativus L. HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Dinv38001 Davidia involucrata HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Migut.I00926 Erythranthe guttata HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Thhalv10019999m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Gohir.A10G067100 Gossypium hirsutum HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Gohir.D10G068200 Gossypium hirsutum HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Gorai.011G072800 Gossypium raimondii HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
HanXRQChr09g0275951 Helianthus annuus HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Hma1.2p1_1689F.1_g297710 Hydrangea macrophylla HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Lj3g0015133 Lotus japonicus HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Lalb_Chr24g0396021 Lupinus albus HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
MBI04_g27074_MAGBIO Magnolia biondii HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Manes.11G036300 Manihot esculenta HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Nitab4.5_0013558g0010 Nicotiana tabacum HOM05D003266 ORTHO05D003718 1.4e-09 66.6 33 87.9
Potri.001G186900 Populus trichocarpa HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Sabra01G0153400 Salix brachista HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Sp3g14630 Schrenkiella parvula HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Sed0017993 Sechium edule HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Sed0020980 Sechium edule HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
THA.LOC104817970 Tarenaya hassleriana HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Thecc.06G095700 Theobroma cacao HOM05D003266 ORTHO05D003718 1.4e-09 66.6 32 90.6
Actinidia21698 Actinidia chinensis HOM05D003266 ORTHO05D003718 1.8e-09 66.2 32 90.6
arahy.Tifrunner.gnm1.ann1.X5C2Q6 Arachis hypogaea HOM05D003266 ORTHO05D003718 1.8e-09 66.2 32 90.6
CSS0002644 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 1.8e-09 66.2 32 87.5
Duzib160G0509 Durio zibethinus HOM05D003266 ORTHO05D003718 1.8e-09 66.2 32 87.5
Lsat_1_v5_gn_4_100861 Lactuca sativa HOM05D003266 ORTHO05D003718 1.8e-09 66.2 32 90.6
Lj5C56T10 Lonicera japonica HOM05D003266 ORTHO05D003718 1.8e-09 66.2 32 90.6
Nn2g12597 Nelumbo nucifera HOM05D003266 ORTHO05D003718 1.8e-09 66.2 35 85.7
Os01g0232300 Oryza sativa ssp. japonica HOM05D003266 ORTHO05D003718 1.8e-09 66.2 32 87.5
Prupe.3G063700 Prunus persica HOM05D003266 ORTHO05D003718 1.8e-09 66.2 32 90.6
Sc12g0009560 Simmondsia chinensis HOM05D003266 ORTHO05D003718 1.8e-09 66.2 32 90.6
Sc12g0009670 Simmondsia chinensis HOM05D003266 ORTHO05D003718 1.8e-09 66.2 32 90.6
Zm00001eb339290 Zea mays HOM05D003266 ORTHO05D003718 1.8e-09 66.2 32 87.5
CSS0038057 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 2.3e-09 65.9 32 87.5
QL05p021182 Quercus lobata HOM05D003266 ORTHO05D003718 2.3e-09 65.9 32 87.5
Rhsim08G0225600 Rhododendron simsii HOM05D003266 ORTHO05D003718 2.3e-09 65.9 32 87.5
Hund06647 Selenicereus undatus HOM05D003266 ORTHO05D003718 2.3e-09 65.9 32 90.6
Lj9C510G10 Lonicera japonica HOM05D003266 ORTHO05D003718 3.1e-09 65.5 33 84.8
Lalb_Chr22g0351451 Lupinus albus HOM05D003266 ORTHO05D003718 3.1e-09 65.5 32 87.5
Nitab4.5_0002424g0070 Nicotiana tabacum HOM05D003266 ORTHO05D003718 3.1e-09 65.5 32 87.5
Solyc03g120470.4 Solanum lycopersicum HOM05D003266 ORTHO05D003718 3.1e-09 65.5 32 87.5
PGSC0003DMG401002553 Solanum tuberosum HOM05D003266 ORTHO05D003718 3.1e-09 65.5 32 87.5
TWI12G1119 Tripterygium wilfordii HOM05D003266 ORTHO05D003718 3.1e-09 65.5 32 87.5
CSS0038683 Camellia sinensis var. sinensis HOM05D003266 ORTHO05D003718 4.0e-09 65.1 33 84.8
Cfa002112 Carpinus fangiana HOM05D003266 ORTHO05D003718 4.0e-09 65.1 31 90.3
Haze_16335 Corylus avellana HOM05D003266 ORTHO05D003718 4.0e-09 65.1 31 90.3
HPP92_023819 Vanilla planifolia HOM05D000814 ORTHO05D001161 4.0e-09 65.1 32 87.5
Ciclev10024815m.g Citrus clementina HOM05D003266 ORTHO05D003718 5.2e-09 64.7 32 87.5
Cc04_g02800 Coffea canephora HOM05D003266 ORTHO05D003718 5.2e-09 64.7 32 87.5
Glyma.13G356200 Glycine max HOM05D003266 ORTHO05D003718 5.2e-09 64.7 32 87.5
Glyma.15G017900 Glycine max HOM05D003266 ORTHO05D003718 5.2e-09 64.7 32 87.5
MD03G1197500 Malus domestica HOM05D003266 ORTHO05D003718 5.2e-09 64.7 32 87.5
Oeu040356.1 Olea europaea HOM05D003266 ORTHO05D003718 5.2e-09 64.7 31 90.3
Phvul.005G170100 Phaseolus vulgaris HOM05D003266 ORTHO05D003718 5.2e-09 64.7 32 87.5
TPR.G37248 Trifolium pratense HOM05D003266 ORTHO05D003718 5.2e-09 64.7 32 84.4
VMungo1080G0852 Vigna mungo HOM05D003266 ORTHO05D003718 5.2e-09 64.7 32 87.5
Aa31LG10G2720 Aethionema arabicum HOM05D003266 ORTHO05D003718 6.8e-09 64.3 31 90.3
AUR62032707 Chenopodium quinoa HOM05D003266 ORTHO05D003718 6.8e-09 64.3 32 87.5
Medtr2g101390 Medicago truncatula HOM05D003266 ORTHO05D003718 6.8e-09 64.3 32 84.4
Psat5g297200 Pisum sativum HOM05D003266 ORTHO05D003718 6.8e-09 64.3 32 84.4
PGR102G0722 Punica granatum HOM05D003266 ORTHO05D003718 6.8e-09 64.3 32 87.5
SGA_v2.0_scaffold69G23353 Striga asiatica HOM05D003266 ORTHO05D003718 6.8e-09 64.3 32 87.5
FAN02G0192 Fragaria x ananassa HOM05D003266 ORTHO05D003718 8.9e-09 63.9 32 87.5
PSO210G4271 Papaver somniferum HOM05D003266 ORTHO05D003718 8.9e-09 63.9 36 80.6
PSO210G6470 Papaver somniferum HOM05D003266 ORTHO05D003718 8.9e-09 63.9 36 80.6
Peaxi162Scf00015g00241 Petunia axillaris HOM05D003266 ORTHO05D003718 8.9e-09 63.9 30 93.3
Aa31LG8G3410 Aethionema arabicum HOM05D003266 ORTHO05D003718 1.2e-08 63.5 32 87.5
AagrBONN_evm.TU.Sc2ySwM_344.2120 Anthoceros agrestis HOM05D003266 ORTHO05D003718 1.2e-08 63.5 32 84.4
Ca_01149_v3 Cicer arietinum L. HOM05D003266 ORTHO05D003718 1.2e-08 63.5 32 84.4
TAR626G0182 Trochodendron aralioides HOM05D003266 ORTHO05D003718 1.2e-08 63.5 32 87.5
TAR636G2661 Trochodendron aralioides HOM05D003266 ORTHO05D003718 1.2e-08 63.5 32 87.5
GSVIVG01017040001 Vitis vinifera HOM05D003266 ORTHO05D003718 1.2e-08 63.5 32 87.5
AL1G60260 Arabidopsis lyrata HOM05D003266 ORTHO05D003718 1.5e-08 63.2 31 90.3
AT1G52160 Arabidopsis thaliana HOM05D003266 ORTHO05D003718 1.5e-08 63.2 31 90.3
Carub.0001s4111 Capsella rubella HOM05D003266 ORTHO05D003718 1.5e-08 63.2 31 90.3
CARHR042320 Cardamine hirsuta HOM05D003266 ORTHO05D003718 1.5e-08 63.2 31 90.3
Thhalv10011231m.g Eutrema salsugineum HOM05D003266 ORTHO05D003718 1.5e-08 63.2 31 90.3
FvH4_6g31990 Fragaria vesca HOM05D003266 ORTHO05D003718 1.5e-08 63.2 32 87.5
FAN05G1225 Fragaria x ananassa HOM05D003266 ORTHO05D003718 1.5e-08 63.2 32 87.5
FAN14G1864 Fragaria x ananassa HOM05D003266 ORTHO05D003718 1.5e-08 63.2 32 87.5
PSO017G5626 Papaver somniferum HOM05D003266 ORTHO05D003718 1.5e-08 63.2 32 81.2
RcHm_v2.0_Chr2g0139581 Rosa chinensis HOM05D003266 ORTHO05D003718 1.5e-08 63.2 32 87.5
SalBow2G0145 Salvia bowleyana HOM05D003266 ORTHO05D003718 1.5e-08 63.2 58 58.6
BcaC08g43373 Brassica carinata HOM05D003266 ORTHO05D003718 2.0e-08 62.8 31 90.3
Sp1g38720 Schrenkiella parvula HOM05D003266 ORTHO05D003718 2.0e-08 62.8 31 90.3
Aqoxy5G00790 Aquilegia oxysepala HOM05D003266 ORTHO05D003718 2.6e-08 62.4 31 83.9
A06p02000 Brassica napus HOM05D003266 ORTHO05D003718 2.6e-08 62.4 34 82.4
C06p07410 Brassica napus HOM05D003266 ORTHO05D003718 2.6e-08 62.4 34 82.4
BolC6t35830H Brassica oleracea HOM05D003266 ORTHO05D003718 2.6e-08 62.4 34 82.4
BraA06t23416Z Brassica rapa HOM05D003266 ORTHO05D003718 2.6e-08 62.4 34 82.4
Nitab4.5_0000571g0240 Nicotiana tabacum HOM05D003266 ORTHO05D003718 2.6e-08 62.4 32 84.4
SEGI_12386 Sequoiadendron giganteum HOM05D003266 ORTHO05D003718 2.6e-08 62.4 32 84.4
CAN.G641.60 Capsicum annuum HOM05D003266 ORTHO05D003718 3.4e-08 62.0 32 87.5
SHI11014 Sapria himalayana HOM05D003266 ORTHO05D003718 3.4e-08 62.0 31 83.9
Manes.08G110200 Manihot esculenta HOM05D003266 ORTHO05D003718 4.4e-08 61.6 32 81.2
COL.COLO4_22674 Corchorus olitorius HOM05D003266 ORTHO05D003718 5.8e-08 61.2 32 81.2
COL.COLO4_29286 Corchorus olitorius HOM05D003266 ORTHO05D003718 5.8e-08 61.2 32 81.2
Eucgr.J02950 Eucalyptus grandis HOM05D003266 ORTHO05D003718 5.8e-08 61.2 32 84.4
Solyc10g079670.2 Solanum lycopersicum HOM05D003266 ORTHO05D003718 7.5e-08 60.8 32 84.4
Sopen10g030300 Solanum pennellii HOM05D003266 ORTHO05D003718 7.5e-08 60.8 32 84.4
COL.COLO4_08423 Corchorus olitorius HOM05D003266 ORTHO05D003718 9.9e-08 60.5 30 86.7
Gohir.D01G054332 Gossypium hirsutum HOM05D003266 ORTHO05D003718 9.9e-08 60.5 33 72.7
Sopen12g022640 Solanum pennellii HOM05D003266 ORTHO05D003718 1.3e-07 60.1 32 81.2
TAR383G0500 Trochodendron aralioides HOM05D003266 ORTHO05D003718 1.3e-07 60.1 32 81.2
Gorai.002G074200 Gossypium raimondii HOM05D003266 ORTHO05D003718 1.7e-07 59.7 32 75.0
Pp3c14_3370 Physcomitrium patens HOM05D003266 ORTHO05D003718 1.7e-07 59.7 32 81.2
PGSC0003DMG400026462 Solanum tuberosum HOM05D003266 ORTHO05D003718 1.7e-07 59.7 32 78.1
BcaB02g10013 Brassica carinata HOM05D003266 ORTHO05D003718 2.2e-07 59.3 30 86.7
CBR_g8326 Chara braunii HOM05D003266 ORTHO05D003718 2.2e-07 59.3 36 75.0
SMO201G0121 Selaginella moellendorffii HOM05D003266 ORTHO05D003718 2.2e-07 59.3 31 80.6
Mapoly0003s0137 Marchantia polymorpha HOM05D003266 ORTHO05D003718 3.7e-07 58.5 32 78.1
PSO339G2930 Papaver somniferum HOM05D003266 ORTHO05D003718 3.7e-07 58.5 32 75.0
CANSAT80G0873 Cannabis sativa HOM05D003266 ORTHO05D003718 4.9e-07 58.2 36 75.0
Prupe.1G296500 Prunus persica HOM05D003266 ORTHO05D037429 8.3e-07 57.4 30 83.3
Prupe.6G337500 Prunus persica HOM05D003266 ORTHO05D037429 8.3e-07 57.4 30 83.3
SMO134G0187 Selaginella moellendorffii HOM05D003266 ORTHO05D003718 8.3e-07 57.4 32 75.0
CANSAT56G3441 Cannabis sativa HOM05D003266 ORTHO05D003718 1.1e-06 57.0 32 78.1
AUR62032438 Chenopodium quinoa HOM05D003266 ORTHO05D003718 1.9e-06 56.2 32 75.0
EL10Ac2g02463 Beta vulgaris HOM05D003266 ORTHO05D003718 2.4e-06 55.8 32 75.0
AUR62024783 Chenopodium quinoa HOM05D003266 ORTHO05D003718 2.4e-06 55.8 32 75.0
Hund09088 Selenicereus undatus HOM05D003266 ORTHO05D003718 2.4e-06 55.8 32 78.1


User provided reference genes

Program Settings