Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.7G021700 Prunus persica HOM05D000580 ORTHO05D006815 2.6e-33 144.8 75 100.0
RcHm_v2.0_CPg0501961 Rosa chinensis HOM05D000580 ORTHO05D006815 5.1e-29 130.6 75 90.7
RcHm_v2.0_Chr6g0260481 Rosa chinensis HOM05D000580 ORTHO05D006815 7.4e-28 126.7 75 88.0
RcHm_v2.0_Chr4g0390611 Rosa chinensis HOM05D000580 ORTHO05D006815 4.8e-27 124.0 75 86.7
PSO548G0006 Papaver somniferum HOM05D000580 ORTHO05D006815 2.0e-25 118.6 75 82.7
Lalb_Chr10g0093221 Lupinus albus HOM05D000580 ORTHO05D006815 3.5e-25 117.9 75 85.3
Lalb_Chr25g0283341 Lupinus albus HOM05D000580 ORTHO05D006815 3.5e-25 117.9 75 85.3
Potri.011G074901 Populus trichocarpa HOM05D000580 ORTHO05D006815 5.9e-25 117.1 75 82.7
Potri.011G113742 Populus trichocarpa HOM05D000580 ORTHO05D006815 5.9e-25 117.1 75 82.7
Potri.019G028200 Populus trichocarpa HOM05D000580 ORTHO05D006815 5.9e-25 117.1 75 82.7
PGR111G0073 Punica granatum HOM05D000580 ORTHO05D006815 5.9e-25 117.1 75 82.7
Hma1.2p1_0218F.1_g092720 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 1.0e-24 116.3 75 84.0
Hma1.2p1_2223F.1_g317406 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 1.0e-24 116.3 75 84.0
Gohir.A03G093700 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.3e-24 115.9 75 82.7
CSS0026029 Camellia sinensis var. sinensis HOM05D000580 ORTHO05D006815 1.7e-24 115.5 75 84.0
Gohir.1Z078601 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.7e-24 115.5 75 82.7
Gohir.A09G043800 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.7e-24 115.5 75 82.7
Gohir.D01G102060 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.7e-24 115.5 75 82.7
Gorai.010G031500 Gossypium raimondii HOM05D000580 ORTHO05D006815 1.7e-24 115.5 75 82.7
HanXRQChr02g0038651 Helianthus annuus HOM05D000580 ORTHO05D006815 2.2e-24 115.2 75 80.0
Gohir.A02G100500 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.9e-24 114.8 75 81.3
LjContig00319g0006223 Lotus japonicus HOM05D000580 ORTHO05D006815 2.9e-24 114.8 75 82.7
LjContig00319g0024255 Lotus japonicus HOM05D000580 ORTHO05D006815 2.9e-24 114.8 75 82.7
Nn049s41914 Nelumbo nucifera HOM05D000580 ORTHO05D006815 3.8e-24 114.4 75 82.7
Hund29679 Selenicereus undatus HOM05D000580 ORTHO05D006815 3.8e-24 114.4 75 82.7
CiPaw.10G124800 Carya illinoinensis HOM05D000580 ORTHO05D006815 6.5e-24 113.6 75 84.0
CAN.G219.32 Capsicum annuum HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 80.0
CARHR292710 Cardamine hirsuta HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 78.7
Gohir.1Z049866 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 81.3
Gohir.A12G178620 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 81.3
Gohir.A12G178665 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 81.3
HanXRQChr05g0139711 Helianthus annuus HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 78.7
HanXRQChr05g0152611 Helianthus annuus HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 78.7
HanXRQChr08g0223961 Helianthus annuus HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 78.7
HanXRQChr10g0283641 Helianthus annuus HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 78.7
HanXRQChr10g0284331 Helianthus annuus HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 78.7
HanXRQChr10g0318111 Helianthus annuus HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 78.7
HanXRQChr11g0341921 Helianthus annuus HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 78.7
HanXRQChr14g0459311 Helianthus annuus HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 78.7
HanXRQCPg0580131 Helianthus annuus HOM05D000580 ORTHO05D006815 8.5e-24 113.2 75 78.7
BNapus_Darmor_BZH_scaffold_253p00300 Brassica napus HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
BNapus_Darmor_BZH_scaffold_57p00040 Brassica napus HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
C06p23100 Brassica napus HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
BolSC29t60604H Brassica oleracea HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
BolSC35t60664H Brassica oleracea HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
BolSC35t60735H Brassica oleracea HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
BolSC46t61015H Brassica oleracea HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
BolSC47t61080H Brassica oleracea HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
BolSC49t61168H Brassica oleracea HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
BraA06t25380Z Brassica rapa HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
BraSC138t45558Z Brassica rapa HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
BraSC58t46498Z Brassica rapa HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
BraSC59t46576Z Brassica rapa HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
Carub.0006s2561 Capsella rubella HOM05D000580 ORTHO05D006815 1.1e-23 112.8 75 80.0
CAN.G131.5 Capsicum annuum HOM05D000580 ORTHO05D006815 1.4e-23 112.5 75 80.0
CAN.G1513.10 Capsicum annuum HOM05D000580 ORTHO05D006815 1.4e-23 112.5 75 80.0
Gohir.A09G103100 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.4e-23 112.5 75 81.3
SGA_v2.0_scaffold479G52254 Striga asiatica HOM05D000580 ORTHO05D006815 1.4e-23 112.5 75 80.0
Gohir.A13G110000 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.9e-23 112.1 75 80.0
Eucgr.F03245 Eucalyptus grandis HOM05D000580 ORTHO05D006815 2.5e-23 111.7 75 80.0
Gohir.A12G178630 Gossypium hirsutum HOM05D000580 ORTHO05D006815 2.5e-23 111.7 75 80.0
AL2G20610 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 3.2e-23 111.3 75 78.7
AL2G21660 Arabidopsis lyrata HOM05D000580 ORTHO05D006815 3.2e-23 111.3 75 78.7
ATCG00710 Arabidopsis thaliana HOM05D000580 ORTHO05D006815 3.2e-23 111.3 75 78.7
CARHR282200 Cardamine hirsuta HOM05D000580 ORTHO05D006815 3.2e-23 111.3 75 78.7
Gohir.A12G228900 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.2e-23 111.3 75 81.3
CAN.G1595.6 Capsicum annuum HOM05D000580 ORTHO05D006815 4.2e-23 110.9 75 77.3
HanXRQChr02g0052691 Helianthus annuus HOM05D000580 ORTHO05D006815 4.2e-23 110.9 75 77.3
Sed0004233 Sechium edule HOM05D000580 ORTHO05D006815 7.2e-23 110.2 75 81.3
Sed0008111 Sechium edule HOM05D000580 ORTHO05D006815 7.2e-23 110.2 75 81.3
Sed0015899 Sechium edule HOM05D000580 ORTHO05D006815 7.2e-23 110.2 75 81.3
DCAR_032514 Daucus carota HOM05D000580 ORTHO05D006815 1.2e-22 109.4 75 80.0
Lsat_1_v5_gn_5_67060 Lactuca sativa HOM05D000580 ORTHO05D006815 2.1e-22 108.6 75 77.3
Potri.002G174001 Populus trichocarpa HOM05D000580 ORTHO05D006815 2.1e-22 108.6 73 80.8
Eucgr.B01572 Eucalyptus grandis HOM05D000580 ORTHO05D006815 2.7e-22 108.2 70 82.9
C06p22890 Brassica napus HOM05D000580 ORTHO05D006815 3.6e-22 107.8 75 77.3
Gohir.A05G326916 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.6e-22 107.8 75 78.7
Gohir.A01G128325 Gossypium hirsutum HOM05D000580 ORTHO05D006815 4.7e-22 107.5 75 78.7
Gorai.008G286600 Gossypium raimondii HOM05D000580 ORTHO05D006815 4.7e-22 107.5 75 77.3
Hma1.2p1_0149F.1_g066500 Hydrangea macrophylla HOM05D000580 ORTHO05D006815 6.1e-22 107.1 75 77.3
HanXRQChr04g0094321 Helianthus annuus HOM05D000580 ORTHO05D006815 2.3e-21 105.1 75 74.7
BolC2t08916H Brassica oleracea HOM05D000580 ORTHO05D006815 3.9e-21 104.4 71 77.5
Gohir.D09G103600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.9e-21 104.4 75 74.7
Gorai.005G164900 Gossypium raimondii HOM05D000580 ORTHO05D006815 5.2e-21 104.0 75 76.0
CAN.G129.14 Capsicum annuum HOM05D000580 ORTHO05D006815 8.8e-21 103.2 75 74.7
Gohir.D04G149675 Gossypium hirsutum HOM05D000580 ORTHO05D006815 8.8e-21 103.2 72 77.8
Gohir.A05G286600 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-20 102.4 75 77.3
Gohir.D02G147200 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.5e-20 102.4 75 74.7
CAN.G1478.5 Capsicum annuum HOM05D000580 ORTHO05D006815 2.0e-20 102.1 86 68.6
HanXRQChr11g0345231 Helianthus annuus HOM05D000580 ORTHO05D006815 2.0e-20 102.1 75 72.0
Duzib026G0003 Durio zibethinus HOM05D000580 ORTHO05D001362 2.6e-20 101.7 65 81.5
Duzib124G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 2.6e-20 101.7 65 81.5
Duzib237G0002 Durio zibethinus HOM05D000580 ORTHO05D001362 2.6e-20 101.7 65 81.5
Duzib252G0006 Durio zibethinus HOM05D000580 ORTHO05D001362 2.6e-20 101.7 65 81.5
Duzib256G0004 Durio zibethinus HOM05D000580 ORTHO05D001362 2.6e-20 101.7 65 81.5
Gohir.D02G096801 Gossypium hirsutum HOM05D000580 ORTHO05D006815 3.3e-20 101.3 70 75.7
Medtr2g062930 Medicago truncatula HOM05D000580 ORTHO05D006815 3.3e-20 101.3 67 80.6
EL10Ac1g01194 Beta vulgaris HOM05D000580 ORTHO05D001362 5.7e-20 100.5 65 76.9
Gohir.A09G103075 Gossypium hirsutum HOM05D000580 ORTHO05D006815 9.7e-20 99.8 70 78.6
Lalb_Chr23g0274371 Lupinus albus HOM05D000580 ORTHO05D006815 9.7e-20 99.8 75 74.7
Gorai.005G110300 Gossypium raimondii HOM05D000580 ORTHO05D006815 1.3e-19 99.4 70 75.7
Gohir.A05G301450 Gossypium hirsutum HOM05D000580 ORTHO05D006815 1.7e-19 99.0 75 74.7
CAN.G29.17 Capsicum annuum HOM05D000580 ORTHO05D006815 2.8e-19 98.2 75 73.3
C07p15330 Brassica napus HOM05D000580 ORTHO05D006815 3.7e-19 97.8 66 75.8
CAN.G2018.9 Capsicum annuum HOM05D000580 ORTHO05D006815 6.3e-19 97.1 75 72.0
Nitab4.5_0001105g0140 Nicotiana tabacum HOM05D000580 ORTHO05D006815 6.3e-19 97.1 75 73.3
Hund08570 Selenicereus undatus HOM05D000580 ORTHO05D006815 1.1e-18 96.3 73 75.3
Migut.H01967 Erythranthe guttata HOM05D000580 ORTHO05D006815 1.4e-18 95.9 62 80.6
CAN.G648.1 Capsicum annuum HOM05D000580 ORTHO05D006815 1.8e-18 95.5 75 70.7
Sed0008946 Sechium edule HOM05D000580 ORTHO05D006815 2.4e-18 95.1 75 76.0
Glyma.03G065000 Glycine max HOM05D000580 ORTHO05D006815 5.3e-18 94.0 75 72.0
Nitab4.5_0010531g0030 Nicotiana tabacum HOM05D000580 ORTHO05D006815 2.0e-17 92.0 75 70.7
Gohir.A10G070250 Gossypium hirsutum HOM05D000580 ORTHO05D006815 6.5e-16 87.0 56 80.4
Hund10713 Selenicereus undatus HOM05D000580 ORTHO05D001362 6.5e-16 87.0 72 69.4
Glyma.17G186400 Glycine max HOM05D000580 ORTHO05D006815 2.5e-15 85.1 59 76.3
Ah.10g027190 Amaranthus hybridus HOM05D000580 ORTHO05D001785 2.1e-14 82.0 52 80.8
Ah.10g027480 Amaranthus hybridus HOM05D000580 ORTHO05D001785 2.1e-14 82.0 52 80.8
Peaxi162Scf00299g10016 Petunia axillaris HOM05D000580 ORTHO05D006815 2.1e-14 82.0 66 68.2
Psat6g181560 Pisum sativum HOM05D000580 ORTHO05D001785 2.1e-14 82.0 73 64.4
Psat0s7142g0160 Pisum sativum HOM05D000580 ORTHO05D001785 2.7e-14 81.6 62 71.0
SabraPtG0004100 Salix brachista HOM05D000580 ORTHO05D001785 4.7e-14 80.9 73 60.3
Ah.10g028960 Amaranthus hybridus HOM05D000580 ORTHO05D001785 6.1e-14 80.5 52 78.8
Solyc00g500026.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 6.1e-14 80.5 52 78.8
Solyc00g500072.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 6.1e-14 80.5 52 78.8
Medtr4g051375 Medicago truncatula HOM05D000580 ORTHO05D006815 8.0e-14 80.1 52 78.8
MELO3C033895.2 Cucumis melo HOM05D000580 ORTHO05D006815 1.8e-13 79.0 75 60.0
HanXRQChr01g0020261 Helianthus annuus HOM05D000580 ORTHO05D001785 1.8e-13 79.0 52 75.0
HanXRQChr07g0193501 Helianthus annuus HOM05D000580 ORTHO05D006815 1.8e-13 79.0 53 73.6
Psat7g045200 Pisum sativum HOM05D000580 ORTHO05D006815 1.8e-13 79.0 62 67.7
SabraMtG0010300 Salix brachista HOM05D000580 ORTHO05D006815 1.8e-13 79.0 72 59.7
HanXRQChr10g0299321 Helianthus annuus HOM05D000580 ORTHO05D001785 3.0e-13 78.2 71 62.0
HanXRQChr11g0326921 Helianthus annuus HOM05D000580 ORTHO05D001785 3.0e-13 78.2 71 62.0
Lalb_Chr01g0009811 Lupinus albus HOM05D000580 ORTHO05D006815 4.0e-13 77.8 41 90.2
Psat0s1446g0280 Pisum sativum HOM05D000580 ORTHO05D001785 4.0e-13 77.8 52 75.0
Ah.10g027360 Amaranthus hybridus HOM05D000580 ORTHO05D006815 6.8e-13 77.0 52 76.9
HanXRQChr02g0052541 Helianthus annuus HOM05D000580 ORTHO05D001785 1.5e-12 75.9 71 60.6
Peaxi162Scf00527g00037 Petunia axillaris HOM05D000580 ORTHO05D006815 1.5e-12 75.9 52 75.0
MD04G1032200 Malus domestica HOM05D000580 ORTHO05D006815 7.5e-12 73.6 60 61.7
Nitab4.5_0004376g0090 Nicotiana tabacum HOM05D000580 ORTHO05D006815 9.7e-12 73.2 52 75.0
RcHm_v2.0_Chr2g0140191 Rosa chinensis HOM05D000580 ORTHO05D006815 1.7e-11 72.4 43 79.1
Sc07g0006580 Simmondsia chinensis HOM05D000580 ORTHO05D006815 1.7e-11 72.4 54 64.8
Lsat_1_v5_gn_5_50340 Lactuca sativa HOM05D000580 ORTHO05D006815 2.8e-11 71.6 52 71.2
Sp5g12490 Schrenkiella parvula HOM05D000580 ORTHO05D006815 1.4e-10 69.3 45 77.8
LjContig00318g0018353 Lotus japonicus HOM05D000580 ORTHO05D001785 7.0e-10 67.0 44 75.0
Glyma.05G092100 Glycine max HOM05D000580 ORTHO05D006815 4.5e-09 64.3 43 74.4
SMO086G0029 Selaginella moellendorffii HOM05D000580 ORTHO05D006815 4.5e-09 64.3 75 45.3
BolSC29t60484H Brassica oleracea HOM05D000580 ORTHO05D006815 8.5e-08 60.1 41 73.2
Solyc11g006675.1 Solanum lycopersicum HOM05D000580 ORTHO05D006815 3.2e-07 58.2 39 74.4
BolSC46t61022H Brassica oleracea HOM05D000580 ORTHO05D006815 6.1e-06 53.9 38 71.1


User provided reference genes

Program Settings