Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G356900 Prunus persica HOM05D003481 ORTHO05D004001 0.0e+00 1449.5 765 100.0
MD04G1237800 Malus domestica HOM05D003481 ORTHO05D004001 0.0e+00 1307.7 761 90.9
FvH4_6g01010 Fragaria vesca HOM05D003481 ORTHO05D004001 0.0e+00 1295.8 761 89.1
RcHm_v2.0_Chr3g0448451 Rosa chinensis HOM05D003481 ORTHO05D004001 0.0e+00 1283.9 761 88.7
FAN02G3168 Fragaria x ananassa HOM05D003481 ORTHO05D004001 0.0e+00 1261.9 761 87.4
MD12G1256000 Malus domestica HOM05D003481 ORTHO05D004001 0.0e+00 1259.6 763 88.2
FAN14G4292 Fragaria x ananassa HOM05D003481 ORTHO05D004001 0.0e+00 1232.6 759 86.3
FAN05G1738 Fragaria x ananassa HOM05D003481 ORTHO05D004001 0.0e+00 1227.2 756 86.5
FAN09G1882 Fragaria x ananassa HOM05D003481 ORTHO05D004001 0.0e+00 1190.3 738 86.3
Cfa000748 Carpinus fangiana HOM05D003481 ORTHO05D004001 0.0e+00 1169.8 760 80.4
Dinv03119 Davidia involucrata HOM05D003481 ORTHO05D004001 0.0e+00 1158.3 760 79.6
Ciclev10014122m.g Citrus clementina HOM05D003481 ORTHO05D004001 0.0e+00 1153.7 761 79.2
CiPaw.09G149800 Carya illinoinensis HOM05D003481 ORTHO05D004001 0.0e+00 1135.2 760 78.8
CsaV3_6G052920 Cucumis sativus L. HOM05D003481 ORTHO05D004001 0.0e+00 1129.0 761 79.0
ClCG01G025690 Citrullus lanatus HOM05D003481 ORTHO05D004001 0.0e+00 1120.5 761 77.7
Thecc.06G002800 Theobroma cacao HOM05D003481 ORTHO05D004001 0.0e+00 1104.0 762 77.8
TAR626G0933 Trochodendron aralioides HOM05D003481 ORTHO05D004001 0.0e+00 1103.6 762 76.8
GSVIVG01037972001 Vitis vinifera HOM05D003481 ORTHO05D004001 0.0e+00 1098.2 761 77.0
Atru.chr8.321 Acer truncatum HOM05D003481 ORTHO05D004001 0.0e+00 1093.6 761 77.0
Sed0000926 Sechium edule HOM05D003481 ORTHO05D004001 0.0e+00 1088.9 761 76.7
Hma1.2p1_0410F.1_g147020 Hydrangea macrophylla HOM05D003481 ORTHO05D004001 0.0e+00 1087.4 761 76.9
CSS0014471 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 0.0e+00 1081.6 759 75.1
Duzib235G1444 Durio zibethinus HOM05D003481 ORTHO05D004001 0.0e+00 1079.7 762 75.6
Sed0003597 Sechium edule HOM05D003481 ORTHO05D004001 0.0e+00 1077.0 763 76.1
MELO3C007016.2 Cucumis melo HOM05D003481 ORTHO05D004001 0.0e+00 1076.6 839 71.4
TWI38G1754 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 0.0e+00 1076.2 764 74.1
Glyma.15G192300 Glycine max HOM05D003481 ORTHO05D004001 0.0e+00 1075.5 759 75.2
Gorai.011G004800 Gossypium raimondii HOM05D003481 ORTHO05D004001 5.2e-312 1074.7 761 75.8
Gohir.D10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 1.6e-311 1072.4 761 75.7
Glyma.09G083800 Glycine max HOM05D003481 ORTHO05D004001 4.0e-310 1067.8 759 74.3
Gohir.A10G004400 Gossypium hirsutum HOM05D003481 ORTHO05D004001 3.3e-309 1064.7 761 74.8
Sc13g0010770 Simmondsia chinensis HOM05D003481 ORTHO05D004001 2.8e-308 1061.6 758 73.7
COL.COLO4_26841 Corchorus olitorius HOM05D003481 ORTHO05D004001 1.1e-307 1059.7 761 74.5
TAR624G0033 Trochodendron aralioides HOM05D003481 ORTHO05D004001 2.4e-307 1058.5 760 74.5
THA.LOC104812894 Tarenaya hassleriana HOM05D003481 ORTHO05D004001 4.1e-307 1057.7 760 73.0
Lj6g0004300 Lotus japonicus HOM05D003481 ORTHO05D004001 9.1e-307 1056.6 759 75.0
QL05p065371 Quercus lobata HOM05D003481 ORTHO05D004001 1.6e-306 1055.8 755 75.1
Potri.011G154000 Populus trichocarpa HOM05D003481 ORTHO05D004001 2.0e-306 1055.4 762 73.6
Phvul.009G217900 Phaseolus vulgaris HOM05D003481 ORTHO05D004001 1.3e-305 1052.7 759 74.0
Ca_02512_v3 Cicer arietinum L. HOM05D003481 ORTHO05D004001 1.7e-305 1052.4 760 73.7
TPR.G22668 Trifolium pratense HOM05D003481 ORTHO05D004001 1.5e-304 1049.3 760 73.6
TWI15G0246 Tripterygium wilfordii HOM05D003481 ORTHO05D004001 1.9e-304 1048.9 762 73.4
QL08p057617 Quercus lobata HOM05D003481 ORTHO05D004001 9.4e-304 1046.6 774 73.4
AUR62028144 Chenopodium quinoa HOM05D003481 ORTHO05D004001 2.1e-303 1045.4 761 72.9
Potri.001G442900 Populus trichocarpa HOM05D003481 ORTHO05D004001 4.7e-303 1044.3 762 72.7
Lalb_Chr08g0233181 Lupinus albus HOM05D003481 ORTHO05D004001 1.4e-302 1042.7 763 72.3
Medtr2g047908 Medicago truncatula HOM05D003481 ORTHO05D004001 1.8e-299 1032.3 759 72.5
AUR62005919 Chenopodium quinoa HOM05D003481 ORTHO05D004001 9.1e-299 1030.0 784 71.2
Nn4g25046 Nelumbo nucifera HOM05D003481 ORTHO05D004001 3.5e-298 1028.1 759 71.9
Actinidia02453 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.1e-296 1023.1 760 71.6
Sabra11G0145500 Salix brachista HOM05D003481 ORTHO05D004001 1.5e-293 1012.7 840 66.3
Eucgr.K01948 Eucalyptus grandis HOM05D003481 ORTHO05D004001 9.2e-291 1003.4 767 69.9
Rhsim13G0126800 Rhododendron simsii HOM05D003481 ORTHO05D004001 2.5e-288 995.3 894 62.2
arahy.Tifrunner.gnm1.ann1.D6X22R Arachis hypogaea HOM05D003481 ORTHO05D004001 3.3e-288 995.0 759 71.0
Lj1A1155G48 Lonicera japonica HOM05D003481 ORTHO05D004001 2.6e-285 985.3 686 76.4
CAN.G306.7 Capsicum annuum HOM05D003481 ORTHO05D004001 7.5e-285 983.8 759 68.8
CAN.G954.8 Capsicum annuum HOM05D003481 ORTHO05D004001 1.3e-284 983.0 759 68.9
Sopen02g018780 Solanum pennellii HOM05D003481 ORTHO05D004001 3.7e-284 981.5 760 68.3
Nitab4.5_0002444g0030 Nicotiana tabacum HOM05D003481 ORTHO05D004001 6.4e-284 980.7 759 69.6
Hund09767 Selenicereus undatus HOM05D003481 ORTHO05D004001 5.4e-283 977.6 738 71.7
Duzib160G0577 Durio zibethinus HOM05D003481 ORTHO05D004001 9.2e-283 976.9 762 70.2
Solyc02g030110.2 Solanum lycopersicum HOM05D003481 ORTHO05D004001 1.2e-282 976.5 759 68.5
Sopen02g009430 Solanum pennellii HOM05D003481 ORTHO05D004001 1.2e-282 976.5 759 68.5
vmacro03482 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 3.1e-278 961.8 843 63.2
Nitab4.5_0010415g0040 Nicotiana tabacum HOM05D003481 ORTHO05D004001 3.4e-277 958.4 759 68.6
ECA236G0663 Erigeron canadensis HOM05D003481 ORTHO05D004001 1.4e-275 953.0 759 67.2
EL10Ac3g05104 Beta vulgaris HOM05D003481 ORTHO05D004001 2.4e-275 952.2 816 65.0
CARHR226290 Cardamine hirsuta HOM05D003481 ORTHO05D004001 2.1e-274 949.1 761 66.2
Psat0s4071g0040 Pisum sativum HOM05D003481 ORTHO05D004001 4.6e-274 948.0 689 74.2
Thhalv10024300m.g Eutrema salsugineum HOM05D003481 ORTHO05D004001 6.0e-274 947.6 759 66.8
Lsat_1_v5_gn_7_35621 Lactuca sativa HOM05D003481 ORTHO05D004001 2.3e-273 945.7 760 67.5
Aa31LG6G2100 Aethionema arabicum HOM05D003481 ORTHO05D004001 3.0e-273 945.3 761 66.4
AL7G34630 Arabidopsis lyrata HOM05D003481 ORTHO05D004001 3.0e-273 945.3 759 66.4
C01p13480 Brassica napus HOM05D003481 ORTHO05D004001 9.5e-272 940.3 758 66.6
BolC1t01321H Brassica oleracea HOM05D003481 ORTHO05D004001 9.5e-272 940.3 758 66.6
AT4G19490 Arabidopsis thaliana HOM05D003481 ORTHO05D004001 6.2e-271 937.6 759 66.1
BcaC09g51402 Brassica carinata HOM05D003481 ORTHO05D004001 3.1e-270 935.3 758 66.8
BcaNung01774 Brassica carinata HOM05D003481 ORTHO05D004001 8.9e-270 933.7 765 66.4
BcaNung07226 Brassica carinata HOM05D003481 ORTHO05D004001 2.6e-269 932.2 761 65.4
BcaNung02560 Brassica carinata HOM05D003481 ORTHO05D004001 3.4e-269 931.8 759 65.6
Aqoxy7G02779 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 9.9e-269 930.2 764 65.8
Sp7g18100 Schrenkiella parvula HOM05D003481 ORTHO05D004001 4.9e-268 927.9 759 65.2
BraA01t01089Z Brassica rapa HOM05D003481 ORTHO05D004001 8.3e-268 927.2 758 66.0
A03p51930 Brassica napus HOM05D003481 ORTHO05D004001 3.2e-267 925.2 759 65.3
A01p11430 Brassica napus HOM05D003481 ORTHO05D004001 2.1e-266 922.5 758 65.3
C07p50430 Brassica napus HOM05D003481 ORTHO05D004001 6.0e-266 921.0 758 65.2
DCAR_004311 Daucus carota HOM05D003481 ORTHO05D004001 7.8e-266 920.6 769 65.3
BolC7t45545H Brassica oleracea HOM05D003481 ORTHO05D004001 3.0e-265 918.7 756 65.3
HanXRQChr04g0119881 Helianthus annuus HOM05D003481 ORTHO05D004001 3.3e-264 915.2 759 66.0
Peaxi162Scf00267g00817 Petunia axillaris HOM05D003481 ORTHO05D004001 3.1e-262 908.7 784 63.9
HanXRQChr06g0183401 Helianthus annuus HOM05D003481 ORTHO05D004001 5.2e-262 907.9 760 64.5
BraA03t14280Z Brassica rapa HOM05D003481 ORTHO05D004001 2.2e-260 902.5 770 63.9
Carub.0007s2172 Capsella rubella HOM05D003481 ORTHO05D004001 2.9e-260 902.1 761 63.3
PSO170G3331 Papaver somniferum HOM05D003481 ORTHO05D004001 2.1e-258 896.0 760 65.1
DCAR_001341 Daucus carota HOM05D003481 ORTHO05D004001 6.6e-257 891.0 814 60.7
PSO063G1971 Papaver somniferum HOM05D003481 ORTHO05D004001 5.6e-256 887.9 760 64.9
Ah.13g071230 Amaranthus hybridus HOM05D003481 ORTHO05D004001 9.0e-254 880.6 772 64.4
Cc09_g07300 Coffea canephora HOM05D003481 ORTHO05D004001 2.0e-253 879.4 758 62.5
CDE02G2268 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 1.3e-249 866.7 759 61.3
ATR1132G011 Amborella trichopoda HOM05D003481 ORTHO05D004001 5.1e-249 864.8 763 61.7
arahy.Tifrunner.gnm1.ann1.0SF8RD Arachis hypogaea HOM05D003481 ORTHO05D004001 7.3e-248 860.9 664 70.8
Migut.H01305 Erythranthe guttata HOM05D003481 ORTHO05D004001 6.2e-247 857.8 760 60.8
Oeu008973.2 Olea europaea HOM05D003481 ORTHO05D004001 1.1e-246 857.1 822 57.7
SGA_v2.0_scaffold341G49384 Striga asiatica HOM05D003481 ORTHO05D004001 1.6e-242 843.2 763 60.0
Nitab4.5_0000378g0100 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.5e-240 836.6 756 61.9
SalBow7G3129 Salvia bowleyana HOM05D003481 ORTHO05D004001 1.5e-240 836.6 815 56.9
CDE09G0686 Ceratophyllum demersum HOM05D003481 ORTHO05D004001 5.3e-238 828.2 739 60.2
Zm00001eb419780 Zea mays HOM05D003481 ORTHO05D004001 1.3e-231 807.0 760 58.6
Zm00001eb088370 Zea mays HOM05D003481 ORTHO05D004001 6.2e-231 804.7 764 58.2
HPP92_026238 Vanilla planifolia HOM05D003481 ORTHO05D004001 1.0e-225 787.3 760 57.5
Mapoly0095s0011 Marchantia polymorpha HOM05D003481 ORTHO05D004001 3.5e-205 719.2 836 50.8
Manes.03G069500 Manihot esculenta HOM05D003481 ORTHO05D004001 1.6e-202 710.3 481 77.1
AagrBONN_evm.TU.Sc2ySwM_228.4333 Anthoceros agrestis HOM05D003481 ORTHO05D004001 2.5e-187 659.8 777 49.3
Pp3c11_18680 Physcomitrium patens HOM05D003481 ORTHO05D004001 1.2e-184 651.0 797 48.1
SMO137G0352 Selaginella moellendorffii HOM05D003481 ORTHO05D004001 4.0e-177 625.9 725 49.7
Haze_05982 Corylus avellana HOM05D003481 ORTHO05D004001 4.4e-160 569.3 474 67.5
unitig_21.g20207 Utricularia gibba HOM05D003481 ORTHO05D004001 4.6e-149 532.7 715 46.7
SEGI_29135 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 4.6e-141 506.1 524 55.9
Sabra16G0301200 Salix brachista HOM05D003481 ORTHO05D004001 7.6e-128 462.2 399 63.7
MBI19_g43313_MAGBIO Magnolia biondii HOM05D003481 ORTHO05D004001 1.5e-99 368.2 396 58.3
AagrBONN_evm.TU.Sc2ySwM_117.2303 Anthoceros agrestis HOM05D003481 ORTHO05D004001 1.7e-98 364.8 606 40.9
RcHm_v2.0_Chr7g0240301 Rosa chinensis HOM05D003481 ORTHO05D004001 7.9e-93 345.9 479 48.6
Sabra16G0299600 Salix brachista HOM05D003481 ORTHO05D004001 1.5e-86 325.1 276 64.9
Actinidia33646 Actinidia chinensis HOM05D003481 ORTHO05D004001 8.0e-77 292.7 200 74.5
CSS0048234 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 4.4e-75 287.0 178 80.3
CSS0035493 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 8.3e-66 256.1 235 60.4
Nitab4.5_0025882g0010 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.9e-63 247.7 187 69.5
PRCOL_00001035 Prasinoderma coloniale HOM05D003481 ORTHO05D004001 1.8e-57 228.4 730 27.9
Nitab4.5_0001298g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.6e-56 225.3 225 55.1
CBR_g66144 Chara braunii HOM05D003481 ORTHO05D004001 1.1e-54 219.2 294 47.6
CBR_g45268 Chara braunii HOM05D003481 ORTHO05D004001 3.6e-53 214.2 426 37.3
Actinidia29308 Actinidia chinensis HOM05D003481 ORTHO05D004001 1.2e-48 199.1 184 60.3
SHI31589 Sapria himalayana HOM05D003481 ORTHO05D004001 1.3e-47 195.7 232 50.4
SEGI_21626 Sequoiadendron giganteum HOM05D003481 ORTHO05D004001 3.9e-47 194.1 132 75.0
Os04g0212200 Oryza sativa ssp. japonica HOM05D003481 ORTHO05D004001 1.6e-45 188.7 166 56.0
Manes.03G070216 Manihot esculenta HOM05D003481 ORTHO05D004001 6.2e-45 186.8 112 81.2
arahy.Tifrunner.gnm1.ann1.16LSI5 Arachis hypogaea HOM05D003481 ORTHO05D004001 1.5e-43 182.2 293 43.3
Nitab4.5_0001298g0060 Nicotiana tabacum HOM05D003481 ORTHO05D004001 2.1e-40 171.8 170 60.0
SHI31590 Sapria himalayana HOM05D003481 ORTHO05D004001 3.9e-39 167.5 195 52.8
Sabra16G0299500 Salix brachista HOM05D003481 ORTHO05D000002 5.1e-39 167.2 173 52.6
Cre02.g087551 Chlamydomonas reinhardtii HOM05D003481 ORTHO05D004001 1.9e-33 148.7 782 23.9
MCO09G025 Micromonas commoda HOM05D003481 ORTHO05D004001 3.2e-33 147.9 515 28.9
CSS0015411 Camellia sinensis var. sinensis HOM05D003481 ORTHO05D004001 2.3e-31 141.7 100 67.0
Haze_05980 Corylus avellana HOM05D003481 ORTHO05D004001 6.6e-31 140.2 169 49.1
SHI31588 Sapria himalayana HOM05D003481 ORTHO05D004001 1.1e-30 139.4 87 83.9
Lj1A1155T51 Lonicera japonica HOM05D003481 ORTHO05D004001 1.5e-30 139.0 88 75.0
arahy.Tifrunner.gnm1.ann1.DYC2U6 Arachis hypogaea HOM05D003481 ORTHO05D004001 7.6e-27 126.7 126 55.6
Cfa023843 Carpinus fangiana HOM05D003481 ORTHO05D004001 1.7e-26 125.6 441 25.6
Aqoxy3G00998 Aquilegia oxysepala HOM05D003481 ORTHO05D004001 6.4e-26 123.6 115 61.7
Actinidia29309 Actinidia chinensis HOM05D003481 ORTHO05D004001 9.3e-25 119.8 85 68.2
Lsat_1_v5_gn_2_79640 Lactuca sativa HOM05D003481 ORTHO05D004001 1.3e-21 109.4 193 40.9
Aa31sc55G50 Aethionema arabicum HOM05D003481 ORTHO05D004001 2.4e-20 105.1 76 69.7
Oeu018810.1 Olea europaea HOM05D003481 ORTHO05D004001 3.1e-20 104.8 108 48.1
SHI31592 Sapria himalayana HOM05D003481 ORTHO05D004001 2.2e-18 98.6 85 60.0
Lsat_1_v5_gn_3_92020 Lactuca sativa HOM05D002302 ORTHO05D002728 4.2e-17 94.4 114 49.1
SHI31587 Sapria himalayana HOM05D003481 ORTHO05D004001 5.4e-17 94.0 55 78.2
Lsat_1_v5_gn_0_25080 Lactuca sativa HOM05D003481 ORTHO05D004001 7.1e-17 93.6 168 39.9
vmacro19556 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 4.6e-16 90.9 74 63.5
vmacro19694 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 7.9e-16 90.1 61 75.4
vmacro16031 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 1.0e-15 89.7 170 38.2
Oeu001605.1 Olea europaea HOM05D003481 ORTHO05D004001 1.3e-15 89.4 160 40.6
CBR_g56099 Chara braunii HOM05D003481 ORTHO05D004001 1.1e-14 86.3 108 42.6
SEGI_05968 Sequoiadendron giganteum HOM05D003481 ORTHO05D011771 1.1e-14 86.3 63 61.9
arahy.Tifrunner.gnm1.ann1.A6QARX Arachis hypogaea HOM05D003481 ORTHO05D004001 1.5e-14 85.9 67 61.2
arahy.Tifrunner.gnm1.ann1.SFPI36 Arachis hypogaea HOM05D003481 ORTHO05D004001 2.1e-13 82.0 59 71.2
vmacro19693 Vaccinium macrocarpon HOM05D003481 ORTHO05D004001 8.1e-13 80.1 55 70.9
arahy.Tifrunner.gnm1.ann1.R9RUHP Arachis hypogaea HOM05D003481 ORTHO05D004001 3.1e-12 78.2 51 74.5
Lsat_1_v5_gn_0_13620 Lactuca sativa HOM05D002610 ORTHO05D002926 6.9e-12 77.0 80 50.0
arahy.Tifrunner.gnm1.ann1.40643C Arachis hypogaea HOM05D003481 ORTHO05D004001 2.9e-10 71.6 59 67.8
HanXRQChr17g0556701 Helianthus annuus HOM05D003481 ORTHO05D004001 1.1e-09 69.7 70 54.3
Lsat_1_v5_gn_9_116960 Lactuca sativa HOM05D003481 ORTHO05D004001 1.6e-08 65.9 52 67.3
Nitab4.5_0003773g0070 Nicotiana tabacum HOM05D003481 ORTHO05D004001 1.0e-07 63.2 35 82.9
SHI31584 Sapria himalayana HOM05D003481 ORTHO05D004001 1.9e-06 58.9 45 57.8


User provided reference genes

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