Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1504.6 781 100.0
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1294.6 914 76.6
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1291.2 912 76.9
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1289.2 898 77.8
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1284.2 903 76.6
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1280.0 910 76.0
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1279.6 899 76.6
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1278.8 905 76.2
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1273.1 907 76.0
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1231.1 862 75.5
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1214.9 819 75.7
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1208.0 871 72.3
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1201.8 874 71.5
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1201.0 873 71.8
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1200.3 902 71.3
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1198.0 857 74.0
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1196.8 843 73.0
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1194.1 814 74.3
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1192.6 815 74.6
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1191.8 814 74.0
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1191.0 814 74.0
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1189.5 843 73.1
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1189.5 817 74.4
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1186.8 816 74.6
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1186.0 870 71.4
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1186.0 814 73.7
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1184.9 814 74.9
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1182.2 813 74.0
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1181.4 857 71.3
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1177.5 813 73.4
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1176.0 816 74.0
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1172.1 882 69.5
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1168.7 813 73.4
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1168.3 811 72.7
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1167.5 853 73.2
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1166.0 881 69.2
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1165.6 820 71.8
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1164.4 756 78.0
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1164.4 870 69.3
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1162.9 831 71.8
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1162.5 847 70.8
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1162.5 872 68.6
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1161.4 872 68.5
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1158.7 811 72.7
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1156.4 852 70.0
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1156.0 812 72.5
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1155.6 826 70.7
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1153.7 820 71.5
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1153.3 882 68.4
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1152.5 881 68.7
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1152.1 874 67.7
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1152.1 885 68.5
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1151.3 816 71.8
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1149.0 881 68.7
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1148.3 829 70.0
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1148.3 827 71.6
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1145.6 828 70.4
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1144.8 901 65.7
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1142.5 828 69.7
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1142.5 830 69.8
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1142.5 885 67.3
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1141.7 829 69.8
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1140.9 829 69.6
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1137.9 849 69.5
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1122.8 835 68.7
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1115.9 856 68.2
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1112.1 809 70.2
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1102.4 830 68.2
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1101.7 856 68.0
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1098.6 811 70.2
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1087.0 830 68.9
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1082.8 811 70.4
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1081.2 823 68.9
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 1.1e-311 1072.8 848 67.2
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 3.4e-309 1064.7 814 66.1
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 7.6e-309 1063.5 845 66.4
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 6.5e-308 1060.4 815 65.9
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 9.3e-307 1056.6 892 64.0
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 2.7e-306 1055.0 813 66.5
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 1.5e-304 1049.3 852 64.2
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 2.1e-303 1045.4 811 66.8
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 6.9e-302 1040.4 805 65.0
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 6.7e-289 997.3 803 64.1
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 6.7e-289 997.3 803 64.1
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 1.7e-279 966.1 741 67.6
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 4.3e-243 845.1 472 86.9
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 1.2e-240 837.0 817 54.6
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 3.6e-234 815.5 615 69.6
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 6.2e-234 814.7 494 81.0
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 2.2e-223 779.6 799 51.8
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 1.1e-217 760.8 609 66.2
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.8e-213 744.6 551 69.7
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 7.3e-211 738.0 795 49.7
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 4.1e-185 652.5 518 66.0
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 7.9e-181 638.3 791 45.3
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.9e-180 636.0 500 67.0
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 2.5e-179 633.3 805 43.0
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 2.5e-166 590.1 556 59.9
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 3.6e-157 559.7 474 62.7
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 8.8e-148 528.5 457 63.0
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 1.0e-140 505.0 812 37.4
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 6.1e-133 479.2 412 62.1
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 1.4e-100 371.7 290 67.9
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 8.9e-100 369.0 348 60.1
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 3.8e-98 363.6 209 86.6
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.7e-95 354.8 202 85.6
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 1.1e-94 352.1 255 74.1
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 2.5e-94 350.9 226 75.7
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 3.1e-92 344.0 220 78.2
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.1e-89 332.8 223 73.5
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.8e-87 328.2 191 83.8
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 2.1e-85 321.2 226 73.9
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 1.4e-65 255.4 291 50.2
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 2.8e-61 241.1 137 83.9
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 2.6e-51 208.0 111 91.0
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 1.0e-50 206.1 136 73.5
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 8.8e-47 193.0 113 81.4
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 4.4e-46 190.7 117 79.5
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 5.0e-42 177.2 174 60.9
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 2.9e-34 151.4 87 85.1
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 2.9e-34 151.4 89 83.1
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 5.0e-34 150.6 200 44.5
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 8.5e-34 149.8 89 83.1
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 2.1e-32 145.2 101 68.3
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 5.7e-22 110.5 167 40.1
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 9.8e-22 109.8 69 78.3
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.1e-20 106.3 82 72.0
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.4e-20 105.1 87 58.6
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 7.3e-17 93.6 59 81.4
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.4e-15 89.4 60 71.7
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 1.4e-15 89.4 72 61.1
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.4e-15 89.4 72 61.1
FvH4_6g01352 Fragaria vesca HOM05D002281 ORTHO05D006774 3.0e-15 88.2 102 73.5
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 4.0e-15 87.8 53 81.1
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 8.9e-15 86.7 62 69.4
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 1.5e-14 85.9 51 80.4
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 6.4e-13 80.5 49 81.6
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 1.6e-08 65.9 49 69.4
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 2.1e-08 65.5 118 44.9
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 4.7e-08 64.3 201 26.9
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 8.0e-08 63.5 42 71.4
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 1.8e-07 62.4 38 71.1
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 2.3e-07 62.0 231 25.1
Aa31LG3G2070 Aethionema arabicum HOM05D000855 ORTHO05D008530 2.6e-06 58.5 323 20.7
Carub.0006s1347 Capsella rubella HOM05D006569 ORTHO05D007515 7.5e-06 57.0 273 22.7
Hma1.2p1_0969F.1_g242592 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 7.5e-06 57.0 201 26.4
Hma1.2p1_0969F.1_g242594 Hydrangea macrophylla HOM05D006596 ORTHO05D008497 7.5e-06 57.0 201 26.4


User provided reference genes

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