Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 0.0e+00 1399.8 714 100.0
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 0.0e+00 1146.3 728 81.0
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 0.0e+00 1129.0 736 78.9
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 0.0e+00 1123.6 731 78.1
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 8.2e-310 1066.6 684 81.0
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 2.0e-292 1008.8 712 72.1
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 4.5e-292 1007.7 724 73.1
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 5.6e-282 974.2 734 69.2
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 8.0e-281 970.3 727 69.7
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 4.0e-280 968.0 697 71.2
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 4.1e-277 958.0 691 71.1
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 3.5e-276 954.9 727 68.4
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 9.5e-274 946.8 696 70.1
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 5.2e-272 941.0 702 69.4
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 4.4e-271 937.9 710 68.7
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 5.8e-271 937.6 691 69.6
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 6.4e-270 934.1 689 70.1
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 6.0e-268 927.5 691 69.6
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 1.5e-266 922.9 722 66.3
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 2.5e-266 922.2 691 69.3
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 7.5e-263 910.6 689 68.1
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 6.4e-262 907.5 721 66.6
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 4.1e-261 904.8 691 67.9
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 5.4e-261 904.4 699 67.5
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 4.6e-260 901.4 699 67.4
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 1.3e-259 899.8 722 64.5
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 1.7e-259 899.4 714 64.8
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 3.9e-259 898.3 730 65.1
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 7.3e-258 894.0 731 65.4
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 4.7e-257 891.3 722 63.9
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 8.1e-257 890.6 721 65.3
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 1.2e-255 886.7 716 64.8
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.0e-255 885.9 693 68.0
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 2.6e-255 885.6 692 66.8
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 3.4e-255 885.2 696 66.7
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 3.4e-255 885.2 727 63.7
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 2.2e-254 882.5 734 63.9
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 8.4e-254 880.6 707 64.4
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 4.2e-253 878.2 692 66.5
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 4.6e-252 874.8 715 64.3
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 6.0e-252 874.4 699 64.1
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 3.9e-251 871.7 720 63.2
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 5.1e-251 871.3 691 65.4
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 1.1e-250 870.2 721 64.5
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 1.1e-250 870.2 680 65.1
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 1.5e-250 869.8 698 65.5
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 7.3e-250 867.5 689 66.3
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 3.6e-249 865.1 720 64.0
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 2.6e-247 859.0 733 62.6
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 3.4e-247 858.6 698 64.9
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 1.1e-245 853.6 764 60.5
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 4.2e-245 851.7 714 63.7
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 1.6e-244 849.7 711 62.7
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 3.9e-243 845.1 726 62.3
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 1.6e-241 839.7 693 63.8
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 1.1e-240 837.0 716 61.9
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 1.2e-239 833.6 718 60.3
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 1.9e-234 816.2 784 57.3
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 3.7e-233 812.0 630 65.4
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.7e-233 812.0 701 62.8
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 4.0e-232 808.5 532 75.0
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 4.0e-232 808.5 697 62.4
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 2.1e-228 796.2 696 60.6
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 1.3e-227 793.5 652 65.6
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 3.0e-227 792.3 764 56.9
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 4.3e-226 788.5 686 62.4
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 4.8e-225 785.0 693 60.6
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 6.2e-225 784.6 735 57.6
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 1.4e-224 783.5 693 62.5
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 9.0e-216 754.2 598 66.7
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 1.7e-214 750.0 733 56.5
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 1.4e-213 746.9 584 66.3
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 4.6e-212 741.9 708 58.3
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 7.9e-212 741.1 562 68.5
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 1.4e-211 740.3 714 56.9
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 4.1e-208 728.8 736 56.4
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 1.1e-202 710.7 494 72.1
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 7.4e-202 708.0 566 66.1
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 8.5e-198 694.5 685 54.6
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 1.9e-197 693.3 565 63.9
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 5.7e-194 681.8 443 77.4
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 1.7e-193 680.2 707 56.0
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 1.1e-189 667.5 702 52.6
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 3.2e-189 666.0 494 69.2
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 3.4e-186 656.0 691 52.0
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 3.1e-184 649.4 727 48.4
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 2.1e-172 610.1 710 47.7
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 7.8e-167 591.7 492 64.4
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 8.9e-163 578.2 383 77.0
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.1e-160 571.2 383 76.2
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.9e-160 570.5 383 76.2
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 2.7e-159 566.6 392 72.4
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 1.0e-158 564.7 490 61.2
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 2.3e-150 537.0 708 43.4
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 2.1e-135 487.3 347 69.7
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 6.0e-135 485.7 403 61.8
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 1.7e-134 484.2 347 69.5
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 7.9e-127 458.8 797 39.1
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 1.9e-117 427.6 852 34.3
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 2.5e-117 427.2 749 36.6
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 9.6e-117 425.2 356 62.4
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 8.7e-110 402.1 312 66.3
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 3.1e-107 393.7 696 36.8
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 2.9e-105 387.1 311 66.6
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 3.3e-93 347.1 347 53.9
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 3.3e-93 347.1 730 34.1
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 5.3e-91 339.7 332 55.7
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 8.2e-84 315.8 259 65.6
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 3.8e-81 307.0 293 56.3
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.0e-70 270.8 206 68.4
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 7.0e-67 259.6 315 46.0
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 5.0e-65 253.4 652 30.5
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 5.5e-64 250.0 163 74.8
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.8e-60 237.7 195 61.0
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.1e-59 235.7 267 52.8
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 1.1e-59 235.7 174 69.5
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 3.1e-59 234.2 220 55.5
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 1.8e-51 208.4 153 68.0
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 3.5e-50 204.1 176 59.1
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 4.6e-50 203.8 168 61.9
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 1.9e-48 198.4 202 56.4
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.2e-45 189.1 156 66.0
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 1.1e-30 139.4 150 50.0
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 1.4e-30 139.0 130 56.9
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 2.0e-29 135.2 142 52.8
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 7.1e-27 126.7 141 53.9
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 4.6e-26 124.0 137 55.5
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.9e-24 118.6 133 49.6
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 1.1e-11 76.3 66 63.6
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 3.2e-11 74.7 81 58.0
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 3.2e-11 74.7 51 66.7
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 4.2e-11 74.3 76 52.6
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 2.3e-09 68.6 36 97.2


User provided reference genes

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