Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 0.0e+00 1209.5 643 100.0
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 8.6e-242 840.5 652 73.0
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 9.6e-241 837.0 644 74.2
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 1.9e-236 822.8 652 71.2
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.6e-235 819.7 652 70.9
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.7e-234 816.2 652 70.6
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.5e-233 812.4 652 70.2
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 1.8e-218 763.1 657 65.8
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 5.6e-217 758.1 662 65.0
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 1.3e-216 756.9 661 66.1
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 1.5e-214 750.0 659 65.9
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.6e-214 749.2 662 64.5
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 4.5e-214 748.4 652 66.3
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 1.0e-213 747.3 658 65.0
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.4e-212 743.4 660 65.6
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 7.1e-212 741.1 662 63.6
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 9.3e-212 740.7 662 64.7
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 2.3e-210 736.1 659 64.9
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 8.7e-210 734.2 666 64.9
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 7.4e-209 731.1 661 64.6
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 1.6e-208 729.9 659 64.2
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 1.6e-208 729.9 661 64.6
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 2.8e-208 729.2 661 64.1
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 2.8e-208 729.2 661 64.3
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.4e-207 726.9 661 63.1
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 3.1e-207 725.7 658 64.6
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 6.9e-207 724.5 662 63.9
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.5e-206 723.4 662 63.7
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.5e-206 723.4 664 63.6
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.3e-205 720.3 662 63.7
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 5.0e-205 718.4 662 63.9
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.5e-205 718.0 659 63.6
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 8.4e-205 717.6 658 63.4
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 1.1e-204 717.2 660 63.5
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.2e-204 715.7 659 63.4
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 4.2e-204 715.3 660 62.3
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 5.5e-204 714.9 662 63.1
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 5.5e-204 714.9 656 63.4
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.2e-203 713.8 659 63.4
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 6.1e-203 711.4 659 63.3
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.8e-202 709.9 659 63.4
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.8e-202 709.9 659 64.2
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 8.7e-202 707.6 662 63.6
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 1.1e-201 707.2 662 63.3
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.7e-201 704.9 658 63.1
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 2.4e-199 699.5 655 61.8
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 2.4e-199 699.5 653 60.8
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 2.4e-199 699.5 669 61.3
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 4.5e-198 695.3 664 61.7
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 4.5e-198 695.3 664 61.7
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 1.0e-197 694.1 662 62.1
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 2.2e-197 693.0 659 62.8
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.9e-197 692.6 672 61.3
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 5.0e-197 691.8 661 62.6
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 8.5e-197 691.0 663 61.8
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 8.5e-197 691.0 653 60.0
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.5e-196 689.5 640 62.5
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 1.6e-195 686.8 653 60.8
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 2.5e-193 679.5 652 60.3
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 2.2e-192 676.4 652 59.8
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 6.3e-192 674.9 651 60.5
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 1.1e-191 674.1 659 61.0
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 5.3e-191 671.8 653 59.1
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 6.9e-191 671.4 661 60.7
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 1.7e-189 666.8 650 59.8
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 1.7e-189 666.8 650 59.8
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 2.2e-189 666.4 663 60.6
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 3.8e-189 665.6 647 60.1
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 3.2e-188 662.5 651 59.4
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 7.4e-185 651.4 664 58.9
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 6.3e-184 648.3 667 59.7
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 8.2e-184 647.9 660 58.6
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 9.1e-183 644.4 651 59.0
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 9.1e-183 644.4 672 57.6
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 1.2e-182 644.0 657 58.9
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 5.0e-181 638.6 652 58.9
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 8.5e-181 637.9 656 57.0
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 1.5e-180 637.1 649 56.9
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.5e-180 637.1 670 59.1
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 7.2e-180 634.8 655 59.1
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 9.4e-180 634.4 670 58.7
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.7e-179 632.1 658 57.6
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.4e-178 630.6 647 59.2
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 8.8e-178 627.9 649 57.9
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 8.8e-178 627.9 653 57.7
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 1.1e-177 627.5 656 58.7
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 1.5e-177 627.1 668 57.6
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 3.7e-176 622.5 658 56.5
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 1.4e-175 620.5 666 56.9
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 1.2e-174 617.5 664 56.0
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 1.6e-174 617.1 535 65.0
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 1.6e-174 617.1 657 58.3
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 3.5e-174 615.9 652 56.7
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 4.5e-174 615.5 611 60.9
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 4.5e-174 615.5 652 56.6
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 1.0e-173 614.4 657 56.2
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 1.3e-173 614.0 662 56.6
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 1.3e-173 614.0 655 57.6
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 1.3e-173 614.0 656 57.8
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.7e-173 613.6 658 57.8
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 2.9e-173 612.8 658 57.6
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 8.5e-173 611.3 662 56.9
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 3.2e-172 609.4 658 56.2
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 7.2e-172 608.2 613 60.0
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 7.2e-172 608.2 662 55.0
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 1.6e-171 607.1 659 56.3
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 3.6e-171 605.9 655 55.9
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 6.1e-171 605.1 666 55.4
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 2.6e-169 599.7 666 54.4
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 3.4e-169 599.4 652 56.1
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 4.4e-169 599.0 663 56.6
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 4.4e-169 599.0 648 54.6
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 1.7e-168 597.0 652 54.9
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.4e-167 593.2 674 56.4
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 7.0e-167 591.7 668 55.2
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 9.1e-167 591.3 546 62.6
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 9.1e-167 591.3 546 62.6
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 7.7e-166 588.2 660 55.0
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 3.8e-165 585.9 646 55.9
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 2.5e-164 583.2 659 55.1
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.5e-161 573.9 665 54.6
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.5e-161 573.9 658 54.7
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.3e-160 570.9 656 54.9
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 3.1e-159 566.2 647 54.7
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 9.1e-159 564.7 687 52.8
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 1.6e-158 563.9 655 53.3
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 2.7e-158 563.1 653 53.1
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 3.5e-158 562.8 698 51.0
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 3.5e-158 562.8 675 53.0
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 3.8e-157 559.3 651 53.8
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 7.2e-156 555.1 658 54.4
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.8e-154 550.4 652 54.1
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 2.3e-154 550.1 656 52.3
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 5.2e-154 548.9 678 50.9
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.8e-151 540.4 660 52.6
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 2.0e-150 537.0 652 51.2
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 2.3e-149 533.5 649 52.5
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 5.0e-149 532.3 672 51.8
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 1.9e-148 530.4 665 50.7
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 4.7e-147 525.8 649 52.1
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 4.0e-146 522.7 658 51.1
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 7.3e-140 501.9 650 50.0
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.5e-137 494.2 627 52.2
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 1.0e-133 481.5 659 47.5
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 8.1e-131 471.9 530 54.9
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 5.8e-129 465.7 653 47.0
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 1.1e-127 461.5 609 48.3
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 1.2e-118 431.4 417 61.9
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 9.6e-116 421.8 659 44.9
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 1.6e-115 421.0 604 47.4
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.4e-111 407.9 608 45.7
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 4.3e-108 396.4 401 59.4
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 2.1e-107 394.0 406 59.4
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 9.0e-106 388.7 403 58.8
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 5.5e-103 379.4 649 43.1
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.4e-87 328.2 663 40.7
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.0e-80 305.4 308 57.1
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 3.2e-79 300.4 533 40.2
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 4.6e-78 296.6 552 39.9
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 3.6e-70 270.4 232 64.7
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 7.4e-68 262.7 441 42.9
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 1.0e-61 242.3 645 35.7
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 2.6e-60 237.7 631 33.9
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 3.2e-47 194.1 269 41.3
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 7.8e-33 146.4 113 63.7
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 5.0e-32 143.7 223 48.0
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 1.4e-26 125.6 157 52.2
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 7.3e-23 113.2 76 73.7
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 1.6e-22 112.1 109 52.3
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 6.8e-21 106.7 133 44.4
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.7e-19 100.9 78 74.4
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 4.9e-19 100.5 77 68.8
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 8.3e-19 99.8 125 53.6
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 3.5e-17 94.4 470 24.0
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.8e-14 84.7 74 54.1
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 5.2e-13 80.5 60 65.0
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 9.9e-12 76.3 73 52.1
Cfa025708 Carpinus fangiana HOM05D003743 ORTHO05D004311 1.7e-08 65.5 483 25.3
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 1.6e-06 58.9 314 27.1


User provided reference genes

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