Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G307100 Prunus persica HOM05D007256 ORTHO05D009109 2.3e-89 332.0 151 100.0
RcHm_v2.0_Chr3g0458031 Rosa chinensis HOM05D007256 ORTHO05D009109 1.2e-72 276.6 151 80.8
FAN09G0386 Fragaria x ananassa HOM05D007256 ORTHO05D009109 2.0e-72 275.8 151 80.8
FAN02G0906 Fragaria x ananassa HOM05D007256 ORTHO05D009109 4.9e-71 271.2 151 80.1
FvH4_6g08160 Fragaria vesca HOM05D007256 ORTHO05D009109 3.6e-66 255.0 151 76.2
MD12G1202300 Malus domestica HOM05D007256 ORTHO05D009109 1.2e-64 250.0 151 76.8
CANSAT54G0501 Cannabis sativa HOM05D007256 ORTHO05D009109 3.2e-62 241.9 152 71.1
Haze_04019 Corylus avellana HOM05D007256 ORTHO05D009109 3.2e-62 241.9 153 71.9
GSVIVG01031300001 Vitis vinifera HOM05D007256 ORTHO05D009109 9.3e-62 240.4 153 71.9
QL03p009202 Quercus lobata HOM05D007256 ORTHO05D009109 3.9e-60 235.0 154 72.1
QL03p009011 Quercus lobata HOM05D007256 ORTHO05D009109 6.7e-60 234.2 154 72.1
FAN14G3866 Fragaria x ananassa HOM05D007256 ORTHO05D009109 4.8e-58 228.0 153 68.6
Ciclev10012993m.g Citrus clementina HOM05D007256 ORTHO05D009109 1.4e-57 226.5 156 69.2
TAR362G0938 Trochodendron aralioides HOM05D007256 ORTHO05D009109 4.0e-57 224.9 153 68.6
QL03p009259 Quercus lobata HOM05D007256 ORTHO05D009109 9.0e-57 223.8 154 71.4
Manes.08G108700 Manihot esculenta HOM05D007256 ORTHO05D009109 2.0e-56 222.6 158 67.1
CiPaw.07G034000 Carya illinoinensis HOM05D007256 ORTHO05D009109 2.2e-55 219.2 153 66.7
TWI12G0874 Tripterygium wilfordii HOM05D007256 ORTHO05D009109 5.5e-54 214.5 160 65.6
Nn4g25434 Nelumbo nucifera HOM05D007256 ORTHO05D009109 1.6e-53 213.0 151 64.2
Atru.chr12.1603 Acer truncatum HOM05D007256 ORTHO05D009109 2.7e-53 212.2 179 62.0
Potri.013G004801 Populus trichocarpa HOM05D007256 ORTHO05D009109 1.9e-51 206.1 157 62.4
Cfa006739 Carpinus fangiana HOM05D007256 ORTHO05D009109 5.6e-51 204.5 153 64.1
Eucgr.B01795 Eucalyptus grandis HOM05D007256 ORTHO05D009109 5.6e-51 204.5 156 63.5
Sabra13G0003900 Salix brachista HOM05D007256 ORTHO05D009109 2.1e-50 202.6 156 60.9
Duzib177G0019 Durio zibethinus HOM05D007256 ORTHO05D009109 6.2e-50 201.1 159 59.1
Duzib177G1002 Durio zibethinus HOM05D007256 ORTHO05D009109 1.1e-49 200.3 154 59.7
Thecc.05G327400 Theobroma cacao HOM05D007256 ORTHO05D009109 4.0e-49 198.4 153 60.1
PSO761G0366 Papaver somniferum HOM05D007256 ORTHO05D009109 2.0e-48 196.1 157 59.9
ClCG03G017800 Citrullus lanatus HOM05D007256 ORTHO05D009109 3.4e-48 195.3 154 59.1
COL.COLO4_05498 Corchorus olitorius HOM05D007256 ORTHO05D009109 5.8e-48 194.5 152 60.5
CsaV3_1G037970 Cucumis sativus L. HOM05D007256 ORTHO05D009109 7.6e-48 194.1 157 56.7
FAN05G3272 Fragaria x ananassa HOM05D000487 ORTHO05D000405 7.6e-48 194.1 108 78.7
Solyc01g100990.3 Solanum lycopersicum HOM05D007256 ORTHO05D009109 1.0e-47 193.7 152 59.2
Sopen01g044450 Solanum pennellii HOM05D007256 ORTHO05D009109 1.7e-47 193.0 152 59.2
Oeu060662.1 Olea europaea HOM05D007256 ORTHO05D009109 2.9e-47 192.2 160 57.5
MSTRG.20366 Avicennia marina HOM05D007256 ORTHO05D009109 7.1e-46 187.6 159 56.0
PSO210G0513 Papaver somniferum HOM05D007256 ORTHO05D009109 7.1e-46 187.6 157 56.7
Nitab4.5_0005710g0050 Nicotiana tabacum HOM05D007256 ORTHO05D009109 1.2e-45 186.8 152 59.2
ECA238G0534 Erigeron canadensis HOM05D007256 ORTHO05D009109 1.6e-45 186.4 161 57.1
Nitab4.5_0002783g0030 Nicotiana tabacum HOM05D007256 ORTHO05D009109 1.6e-45 186.4 155 57.4
MELO3C015247.2 Cucumis melo HOM05D000487 ORTHO05D000405 3.5e-45 185.3 153 56.9
Hma1.2p1_0052F.1_g030520 Hydrangea macrophylla HOM05D007256 ORTHO05D009109 7.9e-45 184.1 161 55.9
CAN.G1374.8 Capsicum annuum HOM05D007256 ORTHO05D009109 3.0e-44 182.2 152 55.9
AUR62006795 Chenopodium quinoa HOM05D007256 ORTHO05D009109 8.7e-44 180.6 154 58.4
PGSC0003DMG400002748 Solanum tuberosum HOM05D007256 ORTHO05D009109 8.7e-44 180.6 152 56.6
Lsat_1_v5_gn_2_17440 Lactuca sativa HOM05D007256 ORTHO05D009109 1.5e-43 179.9 153 58.2
Gohir.A13G030200 Gossypium hirsutum HOM05D007256 ORTHO05D009109 2.5e-43 179.1 153 56.2
Zm00001eb333750 Zea mays HOM05D007256 ORTHO05D009109 3.3e-43 178.7 171 52.6
Aqoxy2G02591 Aquilegia oxysepala HOM05D007256 ORTHO05D009109 5.7e-43 177.9 152 55.3
Gohir.D13G028200 Gossypium hirsutum HOM05D007256 ORTHO05D009109 5.7e-43 177.9 156 53.8
Gorai.013G032200 Gossypium raimondii HOM05D007256 ORTHO05D009109 5.7e-43 177.9 156 53.8
SGA_v2.0_scaffold438G51636 Striga asiatica HOM05D007256 ORTHO05D009109 5.7e-43 177.9 157 55.4
HanXRQChr14g0433581 Helianthus annuus HOM05D007256 ORTHO05D009109 9.6e-43 177.2 155 58.1
DCAR_002110 Daucus carota HOM05D007256 ORTHO05D009109 2.1e-42 176.0 151 57.0
Migut.B00859 Erythranthe guttata HOM05D007256 ORTHO05D009109 2.8e-42 175.6 158 55.1
Cpa.g.sc48.207 Carica papaya HOM05D007256 ORTHO05D009109 8.2e-42 174.1 152 58.6
SalBow7G1589 Salvia bowleyana HOM05D007256 ORTHO05D009109 1.4e-41 173.3 180 50.0
Hund07289 Selenicereus undatus HOM05D007256 ORTHO05D009109 3.1e-41 172.2 235 40.9
AL6G38610 Arabidopsis lyrata HOM05D007256 ORTHO05D009109 4.1e-41 171.8 153 54.2
Thhalv10005088m.g Eutrema salsugineum HOM05D007256 ORTHO05D009109 9.0e-41 170.6 151 53.6
Peaxi162Scf00357g00431 Petunia axillaris HOM05D007256 ORTHO05D009109 1.2e-40 170.2 157 53.5
Cc02_g35540 Coffea canephora HOM05D007256 ORTHO05D009109 2.6e-40 169.1 163 50.9
EL10Ac4g09530 Beta vulgaris HOM05D007256 ORTHO05D009109 2.9e-39 165.6 156 53.2
unitig_699.g19800 Utricularia gibba HOM05D007256 ORTHO05D009109 1.9e-38 162.9 177 47.5
TPR.G2616 Trifolium pratense HOM05D007256 ORTHO05D009109 3.2e-38 162.2 146 52.7
Lj5g0000046 Lotus japonicus HOM05D007256 ORTHO05D009109 1.6e-37 159.8 159 52.2
Sed0013353 Sechium edule HOM05D007256 ORTHO05D009109 4.6e-37 158.3 160 49.4
BcaC04g23634 Brassica carinata HOM05D007256 ORTHO05D009109 2.3e-36 156.0 155 51.0
A09p05700 Brassica napus HOM05D007256 ORTHO05D009109 2.3e-36 156.0 158 50.6
C09p06290 Brassica napus HOM05D007256 ORTHO05D009109 2.3e-36 156.0 155 51.0
arahy.Tifrunner.gnm1.ann1.H7RZSB Arachis hypogaea HOM05D007256 ORTHO05D009109 3.0e-36 155.6 159 49.1
arahy.Tifrunner.gnm1.ann1.Q851GZ Arachis hypogaea HOM05D007256 ORTHO05D009109 3.0e-36 155.6 159 48.4
Gorai.001G184000 Gossypium raimondii HOM05D007256 ORTHO05D009109 3.0e-36 155.6 154 50.0
BcaB04g19715 Brassica carinata HOM05D007256 ORTHO05D009109 3.9e-36 155.2 155 51.6
CDE08G0276 Ceratophyllum demersum HOM05D007256 ORTHO05D009109 8.7e-36 154.1 151 50.3
Os01g0252200 Oryza sativa ssp. japonica HOM05D007256 ORTHO05D009109 1.5e-35 153.3 170 47.1
Lalb_Chr02g0147641 Lupinus albus HOM05D007256 ORTHO05D009109 1.9e-35 152.9 147 52.4
AT5G26749 Arabidopsis thaliana HOM05D007256 ORTHO05D009109 2.5e-35 152.5 173 46.8
Psat1g134200 Pisum sativum HOM05D007256 ORTHO05D009109 5.7e-35 151.4 152 48.0
Medtr1g084750 Medicago truncatula HOM05D007256 ORTHO05D009109 1.6e-34 149.8 151 48.3
THA.LOC104821748 Tarenaya hassleriana HOM05D007256 ORTHO05D009109 2.2e-34 149.4 151 49.7
Ca_10190_v3 Cicer arietinum L. HOM05D007256 ORTHO05D009109 2.8e-34 149.1 152 50.7
BraA09t36210Z Brassica rapa HOM05D007256 ORTHO05D009109 4.8e-34 148.3 175 46.9
BolC9t53549H Brassica oleracea HOM05D007256 ORTHO05D009109 8.2e-34 147.5 171 46.8
VMungo0720G0365 Vigna mungo HOM05D007256 ORTHO05D009109 1.8e-33 146.4 152 47.4
Phvul.007G203900 Phaseolus vulgaris HOM05D007256 ORTHO05D009109 2.4e-33 146.0 151 49.0
Aa31LG11G9900 Aethionema arabicum HOM05D007256 ORTHO05D009109 4.1e-33 145.2 156 50.0
Glyma.10G144700 Glycine max HOM05D007256 ORTHO05D009109 1.2e-32 143.7 151 51.0
SEGI_23053 Sequoiadendron giganteum HOM05D007256 ORTHO05D009109 2.6e-32 142.5 158 46.2
TPR.G2644 Trifolium pratense HOM05D007256 ORTHO05D009109 3.4e-32 142.1 154 48.7
ATR0693G354 Amborella trichopoda HOM05D007256 ORTHO05D009109 7.7e-32 141.0 115 54.8
Sp2g21240 Schrenkiella parvula HOM05D007256 ORTHO05D009109 1.3e-31 140.2 152 48.0
Pp3c18_1910 Physcomitrium patens HOM05D007256 ORTHO05D009109 5.0e-31 138.3 151 45.0
HPP92_001218 Vanilla planifolia HOM05D007256 ORTHO05D009109 5.0e-31 138.3 155 46.5
Sc09g0002500 Simmondsia chinensis HOM05D007256 ORTHO05D009109 3.6e-29 132.1 94 61.7
PGR042G2181 Punica granatum HOM05D007256 ORTHO05D009109 1.4e-28 130.2 108 55.6
Carub.0006s2440 Capsella rubella HOM05D007256 ORTHO05D009109 2.8e-26 122.5 113 50.4
Mapoly0054s0011 Marchantia polymorpha HOM05D007256 ORTHO05D009109 2.4e-25 119.4 153 39.9
Gohir.D01G139700 Gossypium hirsutum HOM05D007256 ORTHO05D009109 2.6e-24 115.9 128 46.9
vmacro19770 Vaccinium macrocarpon HOM05D007256 ORTHO05D009109 1.3e-23 113.6 244 33.2
Aqoxy4G00797 Aquilegia oxysepala HOM05D007256 ORTHO05D009109 1.3e-18 97.1 151 39.1
Ah.10g027130 Amaranthus hybridus HOM05D007256 ORTHO05D009109 4.8e-18 95.1 69 60.9
Rhsim05G0121300 Rhododendron simsii HOM05D007256 ORTHO05D009109 7.7e-16 87.8 70 57.1
SHI06526 Sapria himalayana HOM05D007256 ORTHO05D009109 6.1e-13 78.2 43 72.1
HPP92_001189 Vanilla planifolia HOM05D007256 ORTHO05D009109 1.4e-12 77.0 44 68.2
CARHR186830 Cardamine hirsuta HOM05D007256 ORTHO05D009109 7.5e-11 71.2 41 70.7
Gohir.D01G148000 Gossypium hirsutum HOM05D002544 ORTHO05D009109 2.8e-10 69.3 72 48.6
Glyma.20G093702 Glycine max HOM05D007256 ORTHO05D009109 6.5e-07 58.2 67 41.8
Nitab4.5_0000185g0380 Nicotiana tabacum HOM05D007256 ORTHO05D009109 6.5e-07 58.2 33 75.8


User provided reference genes

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