Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G268100 Prunus persica HOM05D007241 ORTHO05D009142 2.5e-184 648.7 333 100.0
FAN02G0490 Fragaria x ananassa HOM05D007241 ORTHO05D009142 6.6e-145 517.7 334 80.2
FvH4_6g12350 Fragaria vesca HOM05D007241 ORTHO05D009142 1.5e-144 516.5 334 80.2
FAN14G0673 Fragaria x ananassa HOM05D007241 ORTHO05D009142 5.6e-144 514.6 334 79.9
FAN05G2185 Fragaria x ananassa HOM05D007241 ORTHO05D009142 1.1e-142 510.4 334 79.0
RcHm_v2.0_Chr3g0464151 Rosa chinensis HOM05D007241 ORTHO05D009142 1.8e-142 509.6 343 79.3
MD04G1143600 Malus domestica HOM05D007241 ORTHO05D009142 3.0e-137 492.3 314 82.2
Cpa.g.sc56.88 Carica papaya HOM05D007241 ORTHO05D009142 5.0e-116 421.8 347 62.5
Haze_20925 Corylus avellana HOM05D007241 ORTHO05D009142 1.2e-114 417.2 343 64.4
CiPaw.10G153200 Carya illinoinensis HOM05D007241 ORTHO05D009142 3.6e-114 415.6 340 65.6
Thecc.05G024800 Theobroma cacao HOM05D007241 ORTHO05D009142 1.4e-113 413.7 345 63.2
TAR633G0637 Trochodendron aralioides HOM05D007241 ORTHO05D009142 3.0e-113 412.5 349 63.0
Gohir.D04G127300 Gossypium hirsutum HOM05D007241 ORTHO05D009142 2.2e-111 406.4 359 60.2
Gorai.012G110300 Gossypium raimondii HOM05D007241 ORTHO05D009142 4.8e-111 405.2 353 60.6
Duzib106G0374 Durio zibethinus HOM05D007241 ORTHO05D009142 4.1e-110 402.1 346 64.2
Duzib093G2007 Durio zibethinus HOM05D007241 ORTHO05D009142 5.3e-110 401.7 345 62.9
Potri.006G094800 Populus trichocarpa HOM05D007241 ORTHO05D009142 1.5e-109 400.2 342 64.0
PGR004G2498 Punica granatum HOM05D007241 ORTHO05D009142 2.0e-109 399.8 344 62.5
GSVIVG01034032001 Vitis vinifera HOM05D007241 ORTHO05D009142 4.5e-109 398.7 343 62.7
Sabra06G0072600 Salix brachista HOM05D007241 ORTHO05D009142 1.0e-108 397.5 343 63.8
CANSAT35G2041 Cannabis sativa HOM05D007241 ORTHO05D009142 2.9e-108 396.0 334 63.2
Eucgr.K03006 Eucalyptus grandis HOM05D007241 ORTHO05D009142 2.9e-108 396.0 350 60.9
Nn2g11326 Nelumbo nucifera HOM05D007241 ORTHO05D009142 9.4e-107 391.0 344 62.2
Atru.chr8.2123 Acer truncatum HOM05D007241 ORTHO05D009142 1.2e-106 390.6 340 62.4
Manes.08G083700 Manihot esculenta HOM05D007241 ORTHO05D009142 7.9e-106 387.9 337 62.0
CSS0004399 Camellia sinensis var. sinensis HOM05D007241 ORTHO05D009142 3.0e-105 386.0 349 60.5
Lj3g0002129 Lotus japonicus HOM05D007241 ORTHO05D009142 6.7e-105 384.8 328 62.8
Lalb_Chr13g0291331 Lupinus albus HOM05D007241 ORTHO05D009142 1.5e-104 383.6 333 60.4
TWI74G0988 Tripterygium wilfordii HOM05D007241 ORTHO05D009142 1.1e-102 377.5 347 59.9
Thhalv10021091m.g Eutrema salsugineum HOM05D007241 ORTHO05D009142 4.5e-101 372.1 337 57.9
Dinv35525 Davidia involucrata HOM05D007241 ORTHO05D009142 2.9e-100 369.4 325 62.5
Hma1.2p1_0671F.1_g200780 Hydrangea macrophylla HOM05D007241 ORTHO05D009142 2.9e-100 369.4 331 59.5
Carub.0003s0832 Capsella rubella HOM05D007241 ORTHO05D009142 5.0e-100 368.6 331 58.3
MELO3C003216.2 Cucumis melo HOM05D007241 ORTHO05D009142 6.5e-100 368.2 337 57.9
Aa31LG3G1690 Aethionema arabicum HOM05D007241 ORTHO05D009142 1.2e-98 364.0 338 57.4
Aqoxy1G00764 Aquilegia oxysepala HOM05D007241 ORTHO05D009142 1.2e-98 364.0 304 63.2
Ciclev10012141m.g Citrus clementina HOM05D007241 ORTHO05D009142 2.1e-98 363.2 348 58.3
AL3G20320 Arabidopsis lyrata HOM05D007241 ORTHO05D009142 2.7e-98 362.8 336 56.8
Sp3g07590 Schrenkiella parvula HOM05D007241 ORTHO05D009142 2.7e-98 362.8 293 61.4
THA.LOC104823276 Tarenaya hassleriana HOM05D007241 ORTHO05D009142 3.6e-98 362.5 345 56.8
BcaC09g48056 Brassica carinata HOM05D007241 ORTHO05D009142 6.1e-98 361.7 336 55.7
Gohir.A04G087000 Gossypium hirsutum HOM05D007241 ORTHO05D009142 1.4e-97 360.5 346 56.9
MBI14_g28606_MAGBIO Magnolia biondii HOM05D007241 ORTHO05D009142 3.0e-97 359.4 341 58.1
ClCG04G007350 Citrullus lanatus HOM05D007241 ORTHO05D009142 3.9e-97 359.0 346 55.5
CsaV3_4G025900 Cucumis sativus L. HOM05D007241 ORTHO05D009142 3.9e-97 359.0 337 56.7
BolC1t05471H Brassica oleracea HOM05D007241 ORTHO05D009142 5.2e-97 358.6 336 55.1
Solyc09g011830.4 Solanum lycopersicum HOM05D007241 ORTHO05D009142 5.2e-97 358.6 339 56.0
AT3G09210 Arabidopsis thaliana HOM05D007241 ORTHO05D009142 8.8e-97 357.8 335 56.7
Sed0022131 Sechium edule HOM05D007241 ORTHO05D009142 8.8e-97 357.8 339 56.9
PGSC0003DMG400020362 Solanum tuberosum HOM05D007241 ORTHO05D009142 1.5e-96 357.1 336 56.5
Sopen09g006650 Solanum pennellii HOM05D007241 ORTHO05D009142 4.4e-96 355.5 339 56.0
Glyma.01G109100 Glycine max HOM05D007241 ORTHO05D009142 5.7e-96 355.1 338 56.2
BraA01t04312Z Brassica rapa HOM05D007241 ORTHO05D009142 1.3e-95 354.0 336 55.4
BcaC09g48011 Brassica carinata HOM05D007241 ORTHO05D009142 1.7e-95 353.6 333 57.1
Nitab4.5_0007671g0010 Nicotiana tabacum HOM05D007241 ORTHO05D009142 2.2e-95 353.2 342 57.0
CARHR083550 Cardamine hirsuta HOM05D007241 ORTHO05D009142 2.8e-95 352.8 341 55.1
AUR62015997 Chenopodium quinoa HOM05D007241 ORTHO05D009142 4.8e-95 352.1 344 56.1
Nitab4.5_0000008g0420 Nicotiana tabacum HOM05D007241 ORTHO05D009142 1.1e-94 350.9 342 56.7
Cc06_g01830 Coffea canephora HOM05D007241 ORTHO05D009142 3.5e-93 345.9 344 56.4
CAN.G1233.2 Capsicum annuum HOM05D007241 ORTHO05D009142 5.9e-93 345.1 336 56.0
Peaxi162Scf00427g00616 Petunia axillaris HOM05D007241 ORTHO05D009142 1.7e-92 343.6 340 54.1
Oeu015010.1 Olea europaea HOM05D007241 ORTHO05D009142 1.1e-91 340.9 323 55.7
Psat7g241800 Pisum sativum HOM05D007241 ORTHO05D009142 2.5e-91 339.7 331 55.9
Phvul.010G006200 Phaseolus vulgaris HOM05D007241 ORTHO05D009142 1.6e-90 337.0 304 55.3
VMungo0331G1333 Vigna mungo HOM05D007241 ORTHO05D009142 4.7e-90 335.5 334 53.3
Ah.07g207300 Amaranthus hybridus HOM05D007241 ORTHO05D009142 6.1e-90 335.1 348 53.2
vmacro20223 Vaccinium macrocarpon HOM05D007241 ORTHO05D009142 8.0e-90 334.7 343 53.6
SGA_v2.0_scaffold85G26792 Striga asiatica HOM05D007241 ORTHO05D009142 6.8e-89 331.6 332 53.3
MSTRG.5609 Avicennia marina HOM05D007241 ORTHO05D009142 8.8e-89 331.3 347 52.2
Ca_20114_v3 Cicer arietinum L. HOM05D007241 ORTHO05D009142 1.2e-88 330.9 388 50.0
Medtr4g019060 Medicago truncatula HOM05D007241 ORTHO05D009142 1.2e-88 330.9 312 57.4
Sc22g0004510 Simmondsia chinensis HOM05D007241 ORTHO05D009142 5.7e-88 328.6 338 53.8
arahy.Tifrunner.gnm1.ann1.IV4I8P Arachis hypogaea HOM05D007241 ORTHO05D009142 9.7e-88 327.8 301 56.8
Migut.J00242 Erythranthe guttata HOM05D007241 ORTHO05D009142 6.3e-87 325.1 334 52.7
PSO063G4791 Papaver somniferum HOM05D007241 ORTHO05D009142 6.3e-87 325.1 294 59.5
EL10Ac3g05675 Beta vulgaris HOM05D007241 ORTHO05D009142 3.5e-85 319.3 336 51.2
Hund04733 Selenicereus undatus HOM05D007241 ORTHO05D009142 1.0e-84 317.8 342 52.9
Actinidia13799 Actinidia chinensis HOM05D007241 ORTHO05D009142 1.8e-81 307.0 322 51.9
DCAR_010398 Daucus carota HOM05D007241 ORTHO05D009142 2.3e-81 306.6 387 47.0
SalBow3G1957 Salvia bowleyana HOM05D007241 ORTHO05D009142 5.7e-80 302.0 328 49.1
unitig_749.g14176 Utricularia gibba HOM05D007241 ORTHO05D009142 6.3e-79 298.5 331 49.5
ATR0618G224 Amborella trichopoda HOM05D007241 ORTHO05D009142 1.4e-78 297.4 339 49.6
HanXRQChr10g0300011 Helianthus annuus HOM05D007241 ORTHO05D009142 2.4e-78 296.6 326 48.8
Lsat_1_v5_gn_2_72881 Lactuca sativa HOM05D007241 ORTHO05D009142 5.4e-78 295.4 332 48.8
arahy.Tifrunner.gnm1.ann1.D4R6TJ Arachis hypogaea HOM05D007241 ORTHO05D009142 1.2e-77 294.3 348 48.3
ECA233G2042 Erigeron canadensis HOM05D007241 ORTHO05D009142 2.8e-74 283.1 282 51.8
Rhsim05G0202600 Rhododendron simsii HOM05D007241 ORTHO05D009142 3.9e-68 262.7 341 46.9
MD12G1157800 Malus domestica HOM05D007241 ORTHO05D009142 3.7e-63 246.1 274 56.2
Os03g0825500 Oryza sativa ssp. japonica HOM05D007241 ORTHO05D009142 1.5e-59 234.2 323 40.9
HPP92_014289 Vanilla planifolia HOM05D007241 ORTHO05D009142 1.5e-59 234.2 241 49.4
AUR62021204 Chenopodium quinoa HOM05D007241 ORTHO05D009142 5.6e-59 232.3 344 46.2
arahy.Tifrunner.gnm1.ann1.4L01Q9 Arachis hypogaea HOM05D007241 ORTHO05D009142 1.6e-58 230.7 210 57.1
TPR.G8187 Trifolium pratense HOM05D007241 ORTHO05D009142 2.0e-56 223.8 278 47.5
CDE04G1578 Ceratophyllum demersum HOM05D007241 ORTHO05D009142 6.4e-55 218.8 217 51.2
Zm00001eb063100 Zea mays HOM05D007241 ORTHO05D009142 1.1e-51 208.0 288 39.9
COL.COLO4_14646 Corchorus olitorius HOM05D007241 ORTHO05D009142 9.3e-38 161.8 136 60.3
Mapoly0003s0142 Marchantia polymorpha HOM05D007241 ORTHO05D009142 6.9e-33 145.6 292 32.2
TPR.G40038 Trifolium pratense HOM05D007241 ORTHO05D009142 4.9e-31 139.4 96 63.5
COL.COLO4_14645 Corchorus olitorius HOM05D007241 ORTHO05D009142 2.1e-29 134.0 131 61.8
Lj3A958T74 Lonicera japonica HOM05D007241 ORTHO05D009142 1.3e-28 131.3 146 54.8
Lj3A958T75 Lonicera japonica HOM05D007241 ORTHO05D009142 8.4e-23 112.1 125 53.6
Pp3c24_19950 Physcomitrium patens HOM05D007241 ORTHO05D009142 1.9e-22 110.9 297 27.9
FAN28G2275 Fragaria x ananassa HOM05D000356 ORTHO05D000265 1.1e-19 101.7 71 77.5
BcaB05g24622 Brassica carinata HOM05D007241 ORTHO05D009142 4.8e-18 96.3 111 44.1
CBR_g25746 Chara braunii HOM05D000019 ORTHO05D000048 1.4e-17 94.7 294 25.9
SEGI_13087 Sequoiadendron giganteum HOM05D007241 ORTHO05D009142 1.8e-12 77.8 101 43.6
TAR629G1375 Trochodendron aralioides HOM05D007241 ORTHO05D009142 2.3e-12 77.4 66 65.2


User provided reference genes

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