Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G242100 Prunus persica HOM05D003872 ORTHO05D004592 1.4e-99 366.3 190 100.0
Prupe.2G325300 Prunus persica HOM05D003872 ORTHO05D004592 9.8e-85 317.0 194 90.2
MD07G1308100 Malus domestica HOM05D003872 ORTHO05D004592 2.9e-60 235.7 196 70.9
Haze_00615 Corylus avellana HOM05D003872 ORTHO05D004592 6.6e-57 224.6 196 65.3
Cfa015874 Carpinus fangiana HOM05D003872 ORTHO05D004592 1.1e-56 223.8 199 63.8
MD01G1235300 Malus domestica HOM05D003872 ORTHO05D004592 1.1e-56 223.8 187 72.2
QL09p024519 Quercus lobata HOM05D003872 ORTHO05D004592 1.3e-55 220.3 192 65.6
CiPaw.06G019100 Carya illinoinensis HOM05D003872 ORTHO05D004592 1.2e-53 213.8 195 62.1
TAR374G1229 Trochodendron aralioides HOM05D003872 ORTHO05D004592 9.6e-48 194.1 200 55.5
FvH4_7g33880 Fragaria vesca HOM05D003872 ORTHO05D004592 4.5e-45 185.3 182 63.7
FAN03G3493 Fragaria x ananassa HOM05D003872 ORTHO05D004592 4.9e-44 181.8 182 62.6
FAN10G4058 Fragaria x ananassa HOM05D003872 ORTHO05D004592 2.4e-43 179.5 182 62.1
COL.COLO4_25305 Corchorus olitorius HOM05D003872 ORTHO05D004592 1.3e-41 173.7 181 58.6
Potri.019G051500 Populus trichocarpa HOM05D003872 ORTHO05D004592 1.3e-41 173.7 194 54.6
RcHm_v2.0_Chr1g0384051 Rosa chinensis HOM05D003872 ORTHO05D004592 1.8e-41 173.3 187 58.8
Cpa.g.sc39.64 Carica papaya HOM05D003872 ORTHO05D004592 4.3e-40 168.7 186 55.9
Manes.09G124700 Manihot esculenta HOM05D003872 ORTHO05D004592 4.8e-39 165.2 191 55.5
Manes.08G162800 Manihot esculenta HOM05D003872 ORTHO05D004592 2.4e-38 162.9 184 54.9
Thecc.09G264400 Theobroma cacao HOM05D003872 ORTHO05D004592 2.4e-38 162.9 187 56.1
Potri.013G088400 Populus trichocarpa HOM05D003872 ORTHO05D004592 4.0e-38 162.2 203 51.7
FAN01G2295 Fragaria x ananassa HOM05D003872 ORTHO05D004592 2.6e-37 159.5 194 55.2
RcHm_v2.0_Chr1g0384071 Rosa chinensis HOM05D003872 ORTHO05D004592 2.6e-37 159.5 170 58.2
Duzib170G1103 Durio zibethinus HOM05D003872 ORTHO05D004592 1.0e-36 157.5 179 55.3
Sabra19G0057100 Salix brachista HOM05D003872 ORTHO05D004592 1.7e-36 156.8 194 50.0
Duzib150G0049 Durio zibethinus HOM05D003872 ORTHO05D004592 2.2e-36 156.4 181 55.2
Gorai.006G119000 Gossypium raimondii HOM05D003872 ORTHO05D004592 2.9e-36 156.0 182 54.9
Ciclev10019553m.g Citrus clementina HOM05D003872 ORTHO05D004592 9.3e-35 151.0 195 48.2
Gohir.D09G101600 Gossypium hirsutum HOM05D003872 ORTHO05D004592 2.1e-34 149.8 180 53.3
CSS0006998 Camellia sinensis var. sinensis HOM05D003872 ORTHO05D004592 3.5e-34 149.1 191 51.8
Duzib168G0937 Durio zibethinus HOM05D003872 ORTHO05D004592 5.1e-33 145.2 176 51.1
Rhsim09G0212400 Rhododendron simsii HOM05D003872 ORTHO05D004592 8.7e-33 144.4 197 49.2
Sed0014695 Sechium edule HOM05D003872 ORTHO05D004592 1.9e-32 143.3 172 52.9
Gohir.A08G007700 Gossypium hirsutum HOM05D003872 ORTHO05D004592 7.4e-32 141.4 179 51.4
Gohir.D08G017800 Gossypium hirsutum HOM05D003872 ORTHO05D004592 9.6e-32 141.0 172 52.3
Gorai.004G012200 Gossypium raimondii HOM05D003872 ORTHO05D004592 4.8e-31 138.7 172 51.7
Atru.chr12.1980 Acer truncatum HOM05D003872 ORTHO05D004592 6.3e-31 138.3 197 50.3
Phvul.002G039400 Phaseolus vulgaris HOM05D003872 ORTHO05D004592 6.9e-30 134.8 173 50.9
arahy.Tifrunner.gnm1.ann1.88Y1ZI Arachis hypogaea HOM05D003872 ORTHO05D004592 2.6e-29 132.9 185 49.7
TWI34G1659 Tripterygium wilfordii HOM05D003872 ORTHO05D004592 2.6e-29 132.9 184 47.8
GSVIVG01024416001 Vitis vinifera HOM05D003872 ORTHO05D004592 2.6e-29 132.9 191 48.2
Nn3g19322 Nelumbo nucifera HOM05D003872 ORTHO05D004592 3.4e-29 132.5 194 49.0
Lj3A888T24 Lonicera japonica HOM05D003872 ORTHO05D004592 4.5e-29 132.1 194 45.4
Nn1g01951 Nelumbo nucifera HOM05D003872 ORTHO05D004592 7.6e-29 131.3 173 48.6
Glyma.11G011300 Glycine max HOM05D003872 ORTHO05D004592 1.3e-28 130.6 183 49.2
Gohir.A09G104900 Gossypium hirsutum HOM05D003872 ORTHO05D004592 2.9e-28 129.4 182 48.9
arahy.Tifrunner.gnm1.ann1.7I89AX Arachis hypogaea HOM05D003872 ORTHO05D004592 3.8e-28 129.0 185 49.2
Lj6g0012287 Lotus japonicus HOM05D003872 ORTHO05D004592 3.8e-28 129.0 186 48.9
Lalb_Chr01g0000961 Lupinus albus HOM05D003872 ORTHO05D004592 5.0e-28 128.6 182 47.8
Medtr5g007710 Medicago truncatula HOM05D003872 ORTHO05D004592 6.5e-28 128.3 180 49.4
LjContig00222g0027729 Lotus japonicus HOM05D003872 ORTHO05D004592 1.9e-27 126.7 176 48.9
Ca_24443_v3 Cicer arietinum L. HOM05D003872 ORTHO05D004592 7.2e-27 124.8 166 48.8
VMungo1215G1922 Vigna mungo HOM05D003872 ORTHO05D004592 1.6e-26 123.6 180 48.9
Glyma.01G228500 Glycine max HOM05D003872 ORTHO05D004592 1.0e-25 120.9 177 48.0
Dinv29163 Davidia involucrata HOM05D003872 ORTHO05D004592 1.8e-25 120.2 124 55.6
TPR.G40787 Trifolium pratense HOM05D003872 ORTHO05D004592 1.8e-25 120.2 177 45.8
ATR0743G218 Amborella trichopoda HOM05D003872 ORTHO05D004592 2.5e-24 116.3 200 43.0
PSO782G2664 Papaver somniferum HOM05D003872 ORTHO05D004592 2.5e-24 116.3 187 42.8
Rhsim03G0221100 Rhododendron simsii HOM05D002636 ORTHO05D003490 3.3e-24 115.9 243 37.4
Hma1.2p1_0758F.1_g213660 Hydrangea macrophylla HOM05D003872 ORTHO05D004592 7.4e-24 114.8 108 57.4
PSO063G1286 Papaver somniferum HOM05D003872 ORTHO05D004592 7.4e-24 114.8 186 41.4
arahy.Tifrunner.gnm1.ann1.N502YT Arachis hypogaea HOM05D003872 ORTHO05D004592 2.4e-22 109.8 157 47.8
CsaV3_2G004570 Cucumis sativus L. HOM05D003872 ORTHO05D004592 7.7e-21 104.8 196 41.8
Eucgr.K00091 Eucalyptus grandis HOM05D003872 ORTHO05D004592 1.0e-20 104.4 182 43.4
Sc25g0001200 Simmondsia chinensis HOM05D003872 ORTHO05D004592 1.7e-20 103.6 174 41.4
Actinidia18702 Actinidia chinensis HOM05D003872 ORTHO05D004592 2.9e-20 102.8 190 41.6
THA.LOC104821768 Tarenaya hassleriana HOM05D003872 ORTHO05D004592 5.0e-20 102.1 156 46.8
Cc02_g00340 Coffea canephora HOM05D003872 ORTHO05D004592 8.5e-20 101.3 181 40.9
MELO3C004334.2 Cucumis melo HOM05D003872 ORTHO05D004592 3.2e-19 99.4 198 40.9
PGR142G0219 Punica granatum HOM05D003872 ORTHO05D004592 4.2e-19 99.0 191 41.4
Aqoxy5G00370 Aquilegia oxysepala HOM05D003872 ORTHO05D004592 5.5e-19 98.6 190 41.6
DCAR_020405 Daucus carota HOM05D003872 ORTHO05D004592 5.5e-19 98.6 171 40.4
Solyc03g096930.4 Solanum lycopersicum HOM05D003872 ORTHO05D004592 7.2e-19 98.2 176 42.0
Sopen03g027680 Solanum pennellii HOM05D003872 ORTHO05D004592 7.2e-19 98.2 176 42.0
Oeu017103.1 Olea europaea HOM05D003872 ORTHO05D004592 2.1e-18 96.7 194 38.7
Nitab4.5_0000021g0440 Nicotiana tabacum HOM05D003872 ORTHO05D004592 3.6e-18 95.9 174 40.2
ECA233G5164 Erigeron canadensis HOM05D003872 ORTHO05D004592 6.1e-18 95.1 168 42.9
Lalb_Chr09g0320231 Lupinus albus HOM05D003872 ORTHO05D004592 1.0e-17 94.4 171 42.1
MD07G1307500 Malus domestica HOM05D003872 ORTHO05D004592 1.4e-17 94.0 58 81.0
Sed0012852 Sechium edule HOM05D003872 ORTHO05D004592 1.8e-17 93.6 123 44.7
MSTRG.13439 Avicennia marina HOM05D003872 ORTHO05D004592 5.1e-17 92.0 164 40.2
MSTRG.2325 Avicennia marina HOM05D003872 ORTHO05D004592 1.3e-15 87.4 181 40.3
ClCG10G009140 Citrullus lanatus HOM05D003872 ORTHO05D004592 1.3e-15 87.4 200 39.0
Lalb_Chr19g0139931 Lupinus albus HOM05D003872 ORTHO05D004592 2.2e-15 86.7 183 39.9
PGSC0003DMG402027033 Solanum tuberosum HOM05D003872 ORTHO05D004592 6.3e-15 85.1 162 38.3
CDE06G2786 Ceratophyllum demersum HOM05D003872 ORTHO05D004592 1.1e-14 84.3 193 34.7
Rhsim03G0168100 Rhododendron simsii HOM05D004509 ORTHO05D005568 3.1e-14 82.8 113 45.1
Oeu027883.1 Olea europaea HOM05D003872 ORTHO05D004592 4.1e-14 82.4 186 35.5
arahy.Tifrunner.gnm1.ann1.D4CCQ1 Arachis hypogaea HOM05D003872 ORTHO05D004592 5.3e-14 82.0 166 40.4
Medtr4g077800 Medicago truncatula HOM05D003872 ORTHO05D004592 5.3e-14 82.0 183 39.3
Psat7g171960 Pisum sativum HOM05D003872 ORTHO05D004592 5.3e-14 82.0 197 37.1
Solyc06g072790.3 Solanum lycopersicum HOM05D003872 ORTHO05D004592 1.5e-13 80.5 171 35.1
Migut.L01227 Erythranthe guttata HOM05D003872 ORTHO05D004592 2.0e-13 80.1 180 41.1
Lsat_1_v5_gn_6_9400 Lactuca sativa HOM05D003872 ORTHO05D004592 3.4e-13 79.3 139 39.6
Sopen06g029170 Solanum pennellii HOM05D003872 ORTHO05D004592 4.5e-13 79.0 163 33.7
Peaxi162Scf00815g00355 Petunia axillaris HOM05D003872 ORTHO05D004592 1.0e-12 77.8 182 37.4
EL10Ac3g05086 Beta vulgaris HOM05D003872 ORTHO05D004592 1.3e-12 77.4 182 35.2
Sp3g14440 Schrenkiella parvula HOM05D003872 ORTHO05D004592 1.7e-12 77.0 170 39.4
SGA_v2.0_scaffold287G47149 Striga asiatica HOM05D003872 ORTHO05D004592 1.7e-12 77.0 179 41.9
AUR62028169 Chenopodium quinoa HOM05D003872 ORTHO05D004592 2.9e-12 76.3 191 37.2
Ca_04923_v3 Cicer arietinum L. HOM05D003872 ORTHO05D002695 2.9e-12 76.3 120 42.5
Ah.04g156820 Amaranthus hybridus HOM05D003872 ORTHO05D004592 3.8e-12 75.9 187 36.9
THA.LOC104823803 Tarenaya hassleriana HOM05D003872 ORTHO05D004592 1.4e-11 73.9 174 36.8
Carub.0003s1582 Capsella rubella HOM05D003872 ORTHO05D004592 2.1e-10 70.1 169 35.5
Thhalv10020585m.g Eutrema salsugineum HOM05D003872 ORTHO05D004592 6.1e-10 68.6 169 36.7
AL3G28740 Arabidopsis lyrata HOM05D003872 ORTHO05D004592 7.9e-10 68.2 169 35.5
Aa31LG8G3240 Aethionema arabicum HOM05D003872 ORTHO05D004592 3.0e-09 66.2 164 37.8
CDE03G0110 Ceratophyllum demersum HOM05D003872 ORTHO05D004592 8.8e-09 64.7 207 30.9
Nitab4.5_0014944g0010 Nicotiana tabacum HOM05D003872 ORTHO05D004592 1.5e-08 63.9 105 40.0
CARHR091250 Cardamine hirsuta HOM05D003872 ORTHO05D004592 2.0e-08 63.5 170 37.1
MBI04_g36030_MAGBIO Magnolia biondii HOM05D003872 ORTHO05D004592 2.0e-08 63.5 197 33.0
A01p38010 Brassica napus HOM05D003872 ORTHO05D004592 4.4e-08 62.4 169 32.0
BraA01t03860Z Brassica rapa HOM05D003872 ORTHO05D004592 4.4e-08 62.4 171 31.6
C01p48220 Brassica napus HOM05D003872 ORTHO05D004592 5.7e-08 62.0 169 33.1
HPP92_015263 Vanilla planifolia HOM05D003872 ORTHO05D004592 7.4e-08 61.6 174 28.2
SGA_v2.0_scaffold36G14425 Striga asiatica HOM05D003872 ORTHO05D004592 3.7e-07 59.3 169 34.3
vmacro10187 Vaccinium macrocarpon HOM05D003872 ORTHO05D004592 8.2e-07 58.2 39 74.4
Nitab4.5_0000115g0380 Nicotiana tabacum HOM05D003872 ORTHO05D004592 1.4e-06 57.4 176 31.8
Nitab4.5_0002193g0030 Nicotiana tabacum HOM05D003872 ORTHO05D004592 1.8e-06 57.0 176 32.4
Migut.E00064 Erythranthe guttata HOM05D003872 ORTHO05D004592 2.4e-06 56.6 162 35.8
Zm00001eb092590 Zea mays HOM05D003872 ORTHO05D004592 4.1e-06 55.8 143 34.3
AL2G19680 Arabidopsis lyrata HOM05D003872 ORTHO05D004592 5.3e-06 55.5 175 29.7


User provided reference genes

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