Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G159400 Prunus persica HOM05D005401 ORTHO05D006582 1.2e-239 833.2 554 100.0
MD01G1002400 Malus domestica HOM05D005401 ORTHO05D006582 1.2e-180 637.1 397 88.4
Dinv03731 Davidia involucrata HOM05D005401 ORTHO05D006582 4.0e-179 632.1 430 80.2
Haze_25113 Corylus avellana HOM05D005401 ORTHO05D006582 4.9e-177 625.2 427 79.4
CiPaw.03G129100 Carya illinoinensis HOM05D005401 ORTHO05D006582 4.2e-176 622.1 428 79.2
QL06p029214 Quercus lobata HOM05D005401 ORTHO05D006582 9.3e-176 620.9 431 80.0
TWI79G0453 Tripterygium wilfordii HOM05D005401 ORTHO05D006582 2.5e-173 612.8 429 77.4
Rhsim10G0136100 Rhododendron simsii HOM05D005401 ORTHO05D006582 3.3e-173 612.5 428 77.3
Thecc.01G128200 Theobroma cacao HOM05D005401 ORTHO05D006582 9.6e-173 610.9 430 78.1
Duzib147G0934 Durio zibethinus HOM05D005401 ORTHO05D006582 1.6e-172 610.1 431 78.9
Ciclev10000834m.g Citrus clementina HOM05D005401 ORTHO05D006582 2.8e-172 609.4 430 73.5
GSVIVG01026512001 Vitis vinifera HOM05D005401 ORTHO05D006582 2.9e-169 599.4 429 76.2
Gohir.D11G230200 Gossypium hirsutum HOM05D005401 ORTHO05D006582 3.8e-169 599.0 430 72.6
Gohir.A11G221000 Gossypium hirsutum HOM05D005401 ORTHO05D006582 6.4e-169 598.2 430 77.9
Potri.007G108200 Populus trichocarpa HOM05D005401 ORTHO05D006582 8.4e-169 597.8 429 70.4
Actinidia06639 Actinidia chinensis HOM05D005401 ORTHO05D006582 2.4e-168 596.3 414 78.0
Gohir.A11G226902 Gossypium hirsutum HOM05D005401 ORTHO05D006582 2.4e-168 596.3 431 70.5
Hma1.2p1_0528F.1_g173030 Hydrangea macrophylla HOM05D005401 ORTHO05D006582 4.2e-168 595.5 426 77.0
Gorai.003G067300 Gossypium raimondii HOM05D005401 ORTHO05D006582 5.4e-168 595.1 431 70.5
CANSAT01G1454 Cannabis sativa HOM05D005401 ORTHO05D006582 7.1e-168 594.7 430 68.8
TAR628G0360 Trochodendron aralioides HOM05D005401 ORTHO05D006582 2.7e-167 592.8 441 71.9
Manes.13G082700 Manihot esculenta HOM05D005401 ORTHO05D006582 3.9e-166 589.0 430 75.8
Dinv24333 Davidia involucrata HOM05D005401 ORTHO05D006582 6.7e-166 588.2 435 69.2
Cfa002819 Carpinus fangiana HOM05D005401 ORTHO05D006582 4.3e-165 585.5 428 75.7
Nn1g06207 Nelumbo nucifera HOM05D005401 ORTHO05D006582 1.6e-164 583.6 439 73.8
Sc16g0003880 Simmondsia chinensis HOM05D005401 ORTHO05D006582 1.1e-163 580.9 415 77.3
RhsimUnG0132800 Rhododendron simsii HOM05D005401 ORTHO05D006582 4.0e-163 578.9 503 59.6
CSS0027531 Camellia sinensis var. sinensis HOM05D005401 ORTHO05D006582 2.9e-161 572.8 464 64.0
PGR102G1978 Punica granatum HOM05D005401 ORTHO05D006582 4.9e-161 572.0 407 78.4
THA.LOC104799501 Tarenaya hassleriana HOM05D005401 ORTHO05D006582 2.5e-160 569.7 429 66.4
vmacro12864 Vaccinium macrocarpon HOM05D005401 ORTHO05D006582 3.2e-160 569.3 439 66.3
Oeu024886.1 Olea europaea HOM05D005401 ORTHO05D006582 7.1e-160 568.2 430 74.2
DCAR_001363 Daucus carota HOM05D005401 ORTHO05D006582 3.5e-159 565.8 416 76.0
Eucgr.H04948 Eucalyptus grandis HOM05D005401 ORTHO05D006582 4.6e-159 565.5 409 77.8
COL.COLO4_14025 Corchorus olitorius HOM05D005401 ORTHO05D006582 6.0e-159 565.1 416 75.7
AUR62003599 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.3e-158 563.9 420 74.5
CsaV3_6G041720 Cucumis sativus L. HOM05D005401 ORTHO05D006582 1.8e-158 563.5 453 71.5
Sed0020894 Sechium edule HOM05D005401 ORTHO05D006582 1.8e-158 563.5 458 69.7
Ah.02g121770 Amaranthus hybridus HOM05D005401 ORTHO05D006582 2.3e-158 563.1 425 73.4
Atru.chr4.842 Acer truncatum HOM05D005401 ORTHO05D006582 3.0e-158 562.8 417 69.8
HanXRQChr04g0116521 Helianthus annuus HOM05D005401 ORTHO05D006582 1.1e-157 560.8 426 72.8
Lsat_1_v5_gn_7_27421 Lactuca sativa HOM05D005401 ORTHO05D006582 1.1e-157 560.8 441 67.6
AUR62017910 Chenopodium quinoa HOM05D005401 ORTHO05D006582 5.6e-157 558.5 427 66.7
Sopen11g001760 Solanum pennellii HOM05D005401 ORTHO05D006582 9.6e-157 557.8 427 72.4
MSTRG.23445 Avicennia marina HOM05D005401 ORTHO05D006582 3.7e-156 555.8 430 66.0
BcaB02g09807 Brassica carinata HOM05D005401 ORTHO05D006582 3.7e-156 555.8 431 63.3
Solyc11g005800.2 Solanum lycopersicum HOM05D005401 ORTHO05D006582 4.0e-155 552.4 427 71.9
PSO170G5022 Papaver somniferum HOM05D005401 ORTHO05D006582 6.9e-155 551.6 431 65.2
Carub.0008s2542 Capsella rubella HOM05D005401 ORTHO05D006582 1.5e-154 550.4 428 64.0
PSO017G4890 Papaver somniferum HOM05D005401 ORTHO05D006582 1.5e-154 550.4 412 68.0
AL8G42040 Arabidopsis lyrata HOM05D005401 ORTHO05D006582 2.0e-154 550.1 412 65.3
BraA06t26078Z Brassica rapa HOM05D005401 ORTHO05D006582 2.0e-154 550.1 433 70.0
ECA236G1881 Erigeron canadensis HOM05D005401 ORTHO05D006582 2.6e-154 549.7 402 74.6
Ca_17644_v3 Cicer arietinum L. HOM05D005401 ORTHO05D006582 4.5e-154 548.9 431 64.5
Psat7g046640 Pisum sativum HOM05D005401 ORTHO05D006582 4.5e-154 548.9 421 64.6
AT5G64630 Arabidopsis thaliana HOM05D005401 ORTHO05D006582 4.9e-153 545.4 412 67.7
Migut.H00736 Erythranthe guttata HOM05D005401 ORTHO05D006582 6.5e-153 545.0 430 64.9
PGSC0003DMG400028676 Solanum tuberosum HOM05D005401 ORTHO05D006582 6.5e-153 545.0 433 71.1
Aqoxy5G02178 Aquilegia oxysepala HOM05D005401 ORTHO05D006582 2.5e-152 543.1 431 71.5
BcaC01g02694 Brassica carinata HOM05D005401 ORTHO05D006582 3.2e-152 542.7 434 62.7
C03p61560 Brassica napus HOM05D005401 ORTHO05D006582 3.2e-152 542.7 434 62.7
Lalb_Chr12g0203191 Lupinus albus HOM05D005401 ORTHO05D006582 5.5e-152 542.0 407 67.6
Cc07_g18120 Coffea canephora HOM05D005401 ORTHO05D006582 7.1e-152 541.6 428 63.3
RcHm_v2.0_Chr2g0120381 Rosa chinensis HOM05D005401 ORTHO05D006582 1.2e-151 540.8 577 69.0
Aa31LG1G17320 Aethionema arabicum HOM05D005401 ORTHO05D006582 2.7e-151 539.7 427 62.3
FAN23G2510 Fragaria x ananassa HOM05D005401 ORTHO05D006582 2.7e-151 539.7 417 68.6
Glyma.05G190800 Glycine max HOM05D005401 ORTHO05D006582 2.7e-151 539.7 453 61.1
BolC3t18416H Brassica oleracea HOM05D005401 ORTHO05D006582 3.5e-151 539.3 441 61.9
Glyma.08G156200 Glycine max HOM05D005401 ORTHO05D006582 1.8e-150 537.0 416 65.1
Lalb_Chr13g0296571 Lupinus albus HOM05D005401 ORTHO05D006582 3.9e-150 535.8 432 64.1
EL10Ac7g17633 Beta vulgaris HOM05D005401 ORTHO05D006582 1.6e-148 530.4 417 73.4
Nitab4.5_0000805g0050 Nicotiana tabacum HOM05D005401 ORTHO05D006582 8.2e-148 528.1 427 70.3
FvH4_1g24150 Fragaria vesca HOM05D005401 ORTHO05D006582 9.0e-147 524.6 577 65.7
ClCG01G015480 Citrullus lanatus HOM05D005401 ORTHO05D006582 1.0e-145 521.2 462 67.3
Phvul.002G271200 Phaseolus vulgaris HOM05D005401 ORTHO05D006582 1.3e-145 520.8 434 61.5
Lj4A848G70 Lonicera japonica HOM05D005401 ORTHO05D006582 6.5e-145 518.5 480 58.8
Sp2g27690 Schrenkiella parvula HOM05D005401 ORTHO05D006582 3.2e-144 516.2 432 66.7
Lalb_Chr00c34g0408611 Lupinus albus HOM05D005401 ORTHO05D006582 6.1e-143 511.9 407 65.6
Medtr8g093540 Medicago truncatula HOM05D005401 ORTHO05D006582 3.0e-142 509.6 421 61.0
VMungo0251G3661 Vigna mungo HOM05D005401 ORTHO05D006582 1.3e-140 504.2 399 64.4
Thhalv10004101m.g Eutrema salsugineum HOM05D005401 ORTHO05D006582 4.1e-139 499.2 432 58.6
CARHR278600 Cardamine hirsuta HOM05D005401 ORTHO05D006582 6.9e-139 498.4 428 65.9
HPP92_001192 Vanilla planifolia HOM05D005401 ORTHO05D006582 6.9e-139 498.4 420 60.7
ATR1136G147 Amborella trichopoda HOM05D005401 ORTHO05D006582 7.7e-138 495.0 438 60.5
EL10Ac6g15280 Beta vulgaris HOM05D005401 ORTHO05D006582 1.7e-137 493.8 491 57.4
Os08g0108200 Oryza sativa ssp. japonica HOM05D005401 ORTHO05D006582 4.2e-136 489.2 411 59.9
MBI06_g43013_MAGBIO Magnolia biondii HOM05D005401 ORTHO05D006582 2.6e-133 479.9 438 58.4
Lj4g0023934 Lotus japonicus HOM05D005401 ORTHO05D006582 2.2e-132 476.9 433 58.0
FAN26G1589 Fragaria x ananassa HOM05D005401 ORTHO05D006582 8.2e-132 474.9 413 69.2
CDE02G0389 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 1.4e-131 474.2 431 63.3
FAN28G1662 Fragaria x ananassa HOM05D005401 ORTHO05D006582 1.8e-131 473.8 585 61.4
MELO3C008048.2 Cucumis melo HOM05D005401 ORTHO05D006582 3.1e-131 473.0 329 80.5
Zm00001eb260310 Zea mays HOM05D005401 ORTHO05D006582 9.1e-131 471.5 404 59.4
Peaxi162Scf00012g01522 Petunia axillaris HOM05D005401 ORTHO05D006582 6.5e-129 465.3 431 65.4
FAN19G2420 Fragaria x ananassa HOM05D005401 ORTHO05D006582 4.2e-128 462.6 585 61.2
A06p31360 Brassica napus HOM05D005401 ORTHO05D006582 9.4e-128 461.5 434 54.8
arahy.Tifrunner.gnm1.ann1.LMDE4E Arachis hypogaea HOM05D005401 ORTHO05D006582 1.6e-127 460.7 431 56.6
Nitab4.5_0000877g0070 Nicotiana tabacum HOM05D005401 ORTHO05D006582 1.4e-126 457.6 427 57.4
arahy.Tifrunner.gnm1.ann1.N6RYVU Arachis hypogaea HOM05D005401 ORTHO05D006582 1.8e-126 457.2 431 56.4
Hund08501 Selenicereus undatus HOM05D005401 ORTHO05D006582 9.7e-125 451.4 429 62.9
SHI11477 Sapria himalayana HOM05D005401 ORTHO05D006582 1.0e-118 431.4 410 62.0
HPP92_001165 Vanilla planifolia HOM05D005401 ORTHO05D006582 6.8e-118 428.7 379 58.8
Sabra07G0088600 Salix brachista HOM05D005401 ORTHO05D006582 2.4e-107 393.7 368 57.3
SGA_v2.0_scaffold355G49767 Striga asiatica HOM05D005401 ORTHO05D006582 3.8e-105 386.3 396 60.4
TPR.G37327 Trifolium pratense HOM05D005401 ORTHO05D006582 6.1e-103 379.0 277 67.9
unitig_899.g14701 Utricularia gibba HOM05D005401 ORTHO05D006582 7.5e-101 372.1 435 50.3
Mapoly0080s0001 Marchantia polymorpha HOM05D005401 ORTHO05D006582 2.7e-98 363.6 408 48.3
AagrBONN_evm.TU.Sc2ySwM_117.3371 Anthoceros agrestis HOM05D005401 ORTHO05D006582 7.8e-98 362.1 409 54.8
AUR62043710 Chenopodium quinoa HOM05D005401 ORTHO05D006582 1.3e-97 361.3 338 58.6
CBR_g20440 Chara braunii HOM05D005401 ORTHO05D006582 1.8e-78 297.7 402 42.8
SEGI_26195 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 1.1e-72 278.5 250 68.8
HanXRQChr04g0116511 Helianthus annuus HOM05D005401 ORTHO05D006582 9.9e-69 265.4 298 48.7
Pp3c1_14660 Physcomitrium patens HOM05D005401 ORTHO05D006582 1.1e-67 261.9 399 46.6
Pp3c1_14663 Physcomitrium patens HOM05D005401 ORTHO05D006582 1.1e-67 261.9 399 46.6
Cc06_g17340 Coffea canephora HOM05D005401 ORTHO05D006582 1.8e-62 244.6 248 54.0
Actinidia20088 Actinidia chinensis HOM05D005401 ORTHO05D006582 4.0e-62 243.4 168 72.0
PRCOL_00001389 Prasinoderma coloniale HOM05D005401 ORTHO05D006582 2.0e-61 241.1 447 35.3
Cc00_g25980 Coffea canephora HOM05D005401 ORTHO05D006582 1.1e-51 208.8 182 57.1
Cpa.g.sc42.131 Carica papaya HOM05D005401 ORTHO05D006582 7.9e-50 202.6 225 51.6
MD15G1342000 Malus domestica HOM05D005401 ORTHO05D006582 1.3e-49 201.8 240 49.2
Cc06_g17330 Coffea canephora HOM05D005401 ORTHO05D006582 2.3e-49 201.1 180 56.7
SEGI_17010 Sequoiadendron giganteum HOM05D005401 ORTHO05D006582 5.6e-48 196.4 182 56.6
Cc00_g35900 Coffea canephora HOM05D005401 ORTHO05D006582 1.4e-43 181.8 114 76.3
MCO05G520 Micromonas commoda HOM05D005401 ORTHO05D006582 7.1e-43 179.5 479 28.8
BcaB02g09802 Brassica carinata HOM05D005401 ORTHO05D006582 4.6e-42 176.8 162 58.0
Cc00_g32180 Coffea canephora HOM05D005401 ORTHO05D006582 5.1e-41 173.3 152 57.2
TPR.G8435 Trifolium pratense HOM05D005401 ORTHO05D006582 5.1e-41 173.3 150 57.3
MD15G1342300 Malus domestica HOM05D005401 ORTHO05D006582 1.4e-35 155.2 112 73.2
Cpa.g.c33663 Carica papaya HOM05D005401 ORTHO05D006582 4.1e-30 137.1 75 85.3
Actinidia08420 Actinidia chinensis HOM05D005401 ORTHO05D006582 6.9e-30 136.3 81 77.8
ClCG01G015490 Citrullus lanatus HOM05D005401 ORTHO05D006582 2.0e-29 134.8 81 76.5
Cfa027226 Carpinus fangiana HOM05D005401 ORTHO05D006582 4.2e-27 127.1 230 33.5
CDE10G0537 Ceratophyllum demersum HOM05D005401 ORTHO05D006582 2.1e-26 124.8 113 55.8
Cpa.g.sc3234.2 Carica papaya HOM05D005401 ORTHO05D006582 1.3e-23 115.5 67 82.1
Cfa026613 Carpinus fangiana HOM05D003901 ORTHO05D004511 1.0e-20 105.9 375 23.2
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 1.0e-20 105.9 84 61.9
PRCOL_00000149 Prasinoderma coloniale HOM05D003901 ORTHO05D004511 1.1e-19 102.4 454 25.3
BcaB02g09805 Brassica carinata HOM05D005401 ORTHO05D006582 1.5e-16 92.0 253 31.6
Cre13.g575950 Chlamydomonas reinhardtii HOM05D003901 ORTHO05D004511 5.3e-14 83.6 391 22.8
SMO139G0105 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 2.0e-13 81.6 445 24.0
SMO165G0087 Selaginella moellendorffii HOM05D003901 ORTHO05D004511 2.0e-13 81.6 445 24.0
Psat1g035320 Pisum sativum HOM05D005401 ORTHO05D006582 7.7e-13 79.7 55 63.6
HanXRQChr04g0116501 Helianthus annuus HOM05D005401 ORTHO05D006582 2.2e-12 78.2 39 84.6
Psat7g085120 Pisum sativum HOM05D005401 ORTHO05D006582 3.8e-12 77.4 52 65.4
MCO11G428 Micromonas commoda HOM05D003901 ORTHO05D004511 8.5e-12 76.3 399 23.6
MCO11G429 Micromonas commoda HOM05D003901 ORTHO05D004511 8.5e-12 76.3 399 23.6
CBR_g60059 Chara braunii HOM05D003901 ORTHO05D004511 3.2e-11 74.3 458 22.3
Lj3g0011305 Lotus japonicus HOM05D005401 ORTHO05D006582 2.7e-10 71.2 82 47.6
Psat4g107600 Pisum sativum HOM05D005401 ORTHO05D006582 4.7e-10 70.5 50 60.0
Zm00001eb307860 Zea mays HOM05D003901 ORTHO05D004511 4.7e-10 70.5 428 21.7
CDE06G1793 Ceratophyllum demersum HOM05D003901 ORTHO05D004511 1.0e-09 69.3 308 24.0
TWI31G1346 Tripterygium wilfordii HOM05D003901 ORTHO05D004511 1.0e-09 69.3 463 20.3
AT3G44530 Arabidopsis thaliana HOM05D003901 ORTHO05D004511 5.2e-09 67.0 459 20.3
Glyma.12G183500 Glycine max HOM05D003901 ORTHO05D004511 5.2e-09 67.0 460 19.8
Carub.0005s1017 Capsella rubella HOM05D003901 ORTHO05D004511 6.7e-09 66.6 459 20.3
Lj3g0014833 Lotus japonicus HOM05D003901 ORTHO05D004511 6.7e-09 66.6 448 20.5
Manes.04G005300 Manihot esculenta HOM05D003901 ORTHO05D004511 1.1e-08 65.9 308 22.1
Thecc.09G286400 Theobroma cacao HOM05D003901 ORTHO05D004511 1.5e-08 65.5 313 22.0
RcHm_v2.0_Chr1g0317731 Rosa chinensis HOM05D003901 ORTHO05D004511 2.0e-08 65.1 310 23.5
FvH4_3g24580 Fragaria vesca HOM05D003901 ORTHO05D004511 4.4e-08 63.9 312 21.8
Psat5g256560 Pisum sativum HOM05D003901 ORTHO05D004511 4.4e-08 63.9 308 23.1
VMungo1080G0029 Vigna mungo HOM05D003901 ORTHO05D004511 4.4e-08 63.9 458 19.9
Phvul.005G125300 Phaseolus vulgaris HOM05D003901 ORTHO05D004511 5.7e-08 63.5 463 19.9
AL5G22600 Arabidopsis lyrata HOM05D003901 ORTHO05D004511 7.5e-08 63.2 459 19.8
Zm00001eb121570 Zea mays HOM05D003901 ORTHO05D004511 7.5e-08 63.2 423 21.0
Os09g0567700 Oryza sativa ssp. japonica HOM05D003901 ORTHO05D004511 2.8e-07 61.2 436 20.9
Atru.chr3.3302 Acer truncatum HOM05D003901 ORTHO05D004511 4.8e-07 60.5 309 21.0
Ah.15g095680 Amaranthus hybridus HOM05D003901 ORTHO05D004511 7.0e-06 56.6 409 19.6
Psat7g237960 Pisum sativum HOM05D005401 ORTHO05D006582 9.1e-06 56.2 38 63.2


User provided reference genes

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