Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.6G000600 Prunus persica HOM05D004147 ORTHO05D005606 5.0e-155 551.2 307 100.0
MD03G1000100 Malus domestica HOM05D004147 ORTHO05D005606 3.1e-149 531.9 307 95.1
FvH4_3g46070 Fragaria vesca HOM05D004147 ORTHO05D005606 7.0e-149 530.8 274 97.4
MD11G1000500 Malus domestica HOM05D004147 ORTHO05D005606 1.6e-148 529.6 307 95.4
QL01p007763 Quercus lobata HOM05D004147 ORTHO05D005606 4.2e-146 521.5 306 95.1
Thecc.09G206400 Theobroma cacao HOM05D004147 ORTHO05D005606 8.0e-145 517.3 307 93.8
FAN11G3393 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.2e-144 514.6 300 88.7
Lj4g0017588 Lotus japonicus HOM05D004147 ORTHO05D005606 5.2e-144 514.6 274 94.2
COL.COLO4_35060 Corchorus olitorius HOM05D004147 ORTHO05D005606 8.8e-144 513.8 274 95.3
CANSAT35G0441 Cannabis sativa HOM05D004147 ORTHO05D005606 2.0e-143 512.7 274 94.2
FAN16G1044 Fragaria x ananassa HOM05D004147 ORTHO05D005606 2.0e-143 512.7 305 87.2
Duzib150G1508 Durio zibethinus HOM05D004147 ORTHO05D005606 3.4e-143 511.9 307 93.2
CiPaw.13G180000 Carya illinoinensis HOM05D004147 ORTHO05D005606 7.5e-143 510.8 307 87.3
Potri.003G224000 Populus trichocarpa HOM05D004147 ORTHO05D005606 9.8e-143 510.4 309 92.2
Glyma.07G225200 Glycine max HOM05D004147 ORTHO05D005606 1.3e-142 510.0 307 87.3
Gohir.A03G021600 Gossypium hirsutum HOM05D004147 ORTHO05D005606 1.3e-142 510.0 307 88.3
PGR102G2115 Punica granatum HOM05D004147 ORTHO05D005606 1.3e-142 510.0 307 84.4
Gohir.D05G000800 Gossypium hirsutum HOM05D004147 ORTHO05D005606 3.7e-142 508.4 307 87.0
VMungo0251G0902 Vigna mungo HOM05D004147 ORTHO05D005606 3.7e-142 508.4 274 94.2
Gohir.A05G000500 Gossypium hirsutum HOM05D004147 ORTHO05D005606 8.3e-142 507.3 307 87.0
Phvul.002G101600 Phaseolus vulgaris HOM05D004147 ORTHO05D005606 8.3e-142 507.3 274 93.8
Dinv06248 Davidia involucrata HOM05D004147 ORTHO05D005606 1.1e-141 506.9 307 85.7
Dinv15522 Davidia involucrata HOM05D004147 ORTHO05D005606 1.1e-141 506.9 307 85.7
Glyma.20G025100 Glycine max HOM05D004147 ORTHO05D005606 1.4e-141 506.5 274 93.4
Ca_18795_v3 Cicer arietinum L. HOM05D004147 ORTHO05D005606 2.4e-141 505.8 273 93.4
Gorai.003G154600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.1e-141 505.4 274 93.4
Atru.chr3.2044 Acer truncatum HOM05D004147 ORTHO05D005606 4.1e-141 505.0 309 90.6
TPR.G34051 Trifolium pratense HOM05D004147 ORTHO05D005606 1.2e-140 503.4 273 92.7
Nn2g15911 Nelumbo nucifera HOM05D004147 ORTHO05D005606 2.0e-140 502.7 274 92.0
Ciclev10016090m.g Citrus clementina HOM05D004147 ORTHO05D005606 4.5e-140 501.5 274 92.7
Cpa.g.sc119.7 Carica papaya HOM05D004147 ORTHO05D005606 7.7e-140 500.7 274 92.7
Dinv09765 Davidia involucrata HOM05D004147 ORTHO05D005606 7.7e-140 500.7 274 92.3
RcHm_v2.0_Chr5g0084131 Rosa chinensis HOM05D004147 ORTHO05D005606 1.3e-139 500.0 307 90.9
CsaV3_1G041490 Cucumis sativus L. HOM05D004147 ORTHO05D005606 2.3e-139 499.2 307 89.6
MELO3C015560.2 Cucumis melo HOM05D004147 ORTHO05D005606 5.0e-139 498.0 307 89.3
FAN21G1018 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.0e-139 498.0 312 87.5
Gohir.D03G147100 Gossypium hirsutum HOM05D004147 ORTHO05D005606 5.0e-139 498.0 307 87.9
TAR633G2501 Trochodendron aralioides HOM05D004147 ORTHO05D005606 1.5e-138 496.5 307 83.1
Duzib170G0806 Durio zibethinus HOM05D004147 ORTHO05D005606 1.9e-138 496.1 273 93.4
TAR623G0988 Trochodendron aralioides HOM05D004147 ORTHO05D005606 5.6e-138 494.6 274 91.2
Potri.001G000700 Populus trichocarpa HOM05D004147 ORTHO05D005606 9.5e-138 493.8 310 88.1
Eucgr.J01722 Eucalyptus grandis HOM05D004147 ORTHO05D005606 1.2e-137 493.4 275 89.8
Oeu023957.1 Olea europaea HOM05D004147 ORTHO05D005606 1.2e-137 493.4 274 89.8
Medtr4g083230 Medicago truncatula HOM05D004147 ORTHO05D005606 1.6e-137 493.0 273 91.6
CSS0011494 Camellia sinensis var. sinensis HOM05D004147 ORTHO05D005606 2.1e-137 492.7 275 91.3
MBI19_g24069_MAGBIO Magnolia biondii HOM05D004147 ORTHO05D005606 4.0e-136 488.4 269 91.1
Sopen01g025520 Solanum pennellii HOM05D004147 ORTHO05D005606 5.2e-136 488.0 274 88.7
Lalb_Chr16g0385471 Lupinus albus HOM05D004147 ORTHO05D005606 1.5e-135 486.5 274 89.4
Lalb_Chr09g0328961 Lupinus albus HOM05D004147 ORTHO05D005606 2.0e-135 486.1 274 90.1
Hund19733 Selenicereus undatus HOM05D004147 ORTHO05D005606 2.6e-135 485.7 275 88.7
arahy.Tifrunner.gnm1.ann1.41N8FB Arachis hypogaea HOM05D004147 ORTHO05D005606 9.8e-135 483.8 274 89.4
arahy.Tifrunner.gnm1.ann1.JJ8YPF Arachis hypogaea HOM05D004147 ORTHO05D005606 9.8e-135 483.8 274 89.4
TWI60G0666 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 1.4e-133 479.9 307 81.4
Migut.N00528 Erythranthe guttata HOM05D004147 ORTHO05D005606 4.1e-133 478.4 274 86.1
MSTRG.5958 Avicennia marina HOM05D004147 ORTHO05D005606 5.4e-133 478.0 273 86.1
TWI34G0273 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.0e-133 477.6 307 81.8
AUR62040894 Chenopodium quinoa HOM05D004147 ORTHO05D005606 2.0e-132 476.1 275 86.2
CAN.G1941.2 Capsicum annuum HOM05D004147 ORTHO05D005606 2.7e-132 475.7 307 79.8
MSTRG.19397 Avicennia marina HOM05D004147 ORTHO05D005606 3.5e-132 475.3 274 86.9
TWI32G0854 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 7.8e-132 474.2 307 83.7
PSO541G5718 Papaver somniferum HOM05D004147 ORTHO05D005606 1.0e-131 473.8 277 85.6
PSO675G6472 Papaver somniferum HOM05D004147 ORTHO05D005606 1.0e-131 473.8 277 85.6
Sc09g0002150 Simmondsia chinensis HOM05D004147 ORTHO05D005606 1.0e-131 473.8 308 79.5
Aqoxy2G00002 Aquilegia oxysepala HOM05D004147 ORTHO05D005606 3.9e-131 471.9 290 82.8
ClCG03G014680 Citrullus lanatus HOM05D004147 ORTHO05D005606 6.6e-131 471.1 307 86.0
Haze_22914 Corylus avellana HOM05D004147 ORTHO05D005606 8.6e-131 470.7 298 84.6
Cc01_g00350 Coffea canephora HOM05D004147 ORTHO05D005606 9.5e-130 467.2 307 81.1
DCAR_001959 Daucus carota HOM05D004147 ORTHO05D005606 2.1e-129 466.1 274 85.4
PSO339G2679 Papaver somniferum HOM05D004147 ORTHO05D005606 2.8e-129 465.7 305 78.4
Rhsim13G0235300 Rhododendron simsii HOM05D004147 ORTHO05D005606 3.6e-129 465.3 317 77.3
PSO384G4999 Papaver somniferum HOM05D004147 ORTHO05D005606 4.7e-129 464.9 305 78.0
Sed0000702 Sechium edule HOM05D004147 ORTHO05D005606 1.4e-128 463.4 274 82.8
Thhalv10017021m.g Eutrema salsugineum HOM05D004147 ORTHO05D005606 2.3e-128 462.6 274 84.3
CARHR125880 Cardamine hirsuta HOM05D004147 ORTHO05D005606 8.9e-128 460.7 307 77.2
GSVIVG01025513001 Vitis vinifera HOM05D004147 ORTHO05D005606 2.0e-127 459.5 307 80.5
Sp4g14490 Schrenkiella parvula HOM05D004147 ORTHO05D005606 4.4e-127 458.4 274 83.2
SGA_v2.0_scaffold6G03333 Striga asiatica HOM05D000201 ORTHO05D005606 4.4e-127 458.4 310 76.8
EL10Ac4g10393 Beta vulgaris HOM05D004147 ORTHO05D005606 5.8e-127 458.0 276 84.4
ECA238G2098 Erigeron canadensis HOM05D004147 ORTHO05D005606 5.8e-127 458.0 282 83.3
Hma1.2p1_0589F.1_g184660 Hydrangea macrophylla HOM05D004147 ORTHO05D005606 3.7e-126 455.3 326 75.2
ATR0068G003 Amborella trichopoda HOM05D004147 ORTHO05D005606 1.4e-125 453.4 274 82.5
Peaxi162Scf01181g00019 Petunia axillaris HOM05D004147 ORTHO05D005606 2.4e-125 452.6 311 77.2
HanXRQChr14g0437101 Helianthus annuus HOM05D004147 ORTHO05D005606 3.2e-125 452.2 282 84.0
Carub.0004s1343 Capsella rubella HOM05D004147 ORTHO05D005606 4.1e-125 451.8 274 82.5
SGA_v2.0_scaffold3G01703 Striga asiatica HOM05D004147 ORTHO05D005606 5.4e-125 451.4 273 83.5
BraA05t20280Z Brassica rapa HOM05D004147 ORTHO05D005606 9.2e-125 450.7 275 81.8
C04p17540 Brassica napus HOM05D004147 ORTHO05D005606 1.2e-124 450.3 275 82.2
BolC4t23301H Brassica oleracea HOM05D004147 ORTHO05D005606 1.2e-124 450.3 275 82.2
Aa31LG5G4940 Aethionema arabicum HOM05D004147 ORTHO05D005606 1.6e-124 449.9 298 78.2
AT2G32080 Arabidopsis thaliana HOM05D004147 ORTHO05D005606 2.7e-124 449.1 274 82.5
A05p13420 Brassica napus HOM05D004147 ORTHO05D005606 2.7e-124 449.1 275 82.5
Sabra01G0000600 Salix brachista HOM05D004147 ORTHO05D005606 2.7e-124 449.1 347 75.8
HPP92_018009 Vanilla planifolia HOM05D004147 ORTHO05D005606 4.6e-124 448.4 276 80.8
Ah.04g161370 Amaranthus hybridus HOM05D004147 ORTHO05D005606 3.0e-123 445.7 283 81.3
AUR62042623 Chenopodium quinoa HOM05D004147 ORTHO05D005606 3.3e-122 442.2 310 73.9
Sc16g0009630 Simmondsia chinensis HOM05D004147 ORTHO05D005606 4.3e-122 441.8 308 74.4
AL103U10050 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.6e-121 439.9 274 81.8
AL4G27460 Arabidopsis lyrata HOM05D004147 ORTHO05D005606 1.6e-121 439.9 274 81.8
Actinidia16222 Actinidia chinensis HOM05D000201 ORTHO05D001601 2.8e-121 439.1 278 81.7
Os01g0260700 Oryza sativa ssp. japonica HOM05D004147 ORTHO05D005606 4.7e-121 438.3 276 78.6
vmacro04279 Vaccinium macrocarpon HOM05D004147 ORTHO05D005606 4.7e-121 438.3 297 77.4
Zm00001eb333400 Zea mays HOM05D004147 ORTHO05D005606 6.2e-121 438.0 276 79.0
SalBow3G0983 Salvia bowleyana HOM05D004147 ORTHO05D005606 2.3e-120 436.0 281 82.2
Zm00001eb127970 Zea mays HOM05D004147 ORTHO05D005606 3.4e-119 432.2 276 77.5
CDE09G0171 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 3.2e-117 425.6 265 75.8
CDE04G0726 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.6e-116 423.3 274 76.3
Manes.15G111500 Manihot esculenta HOM05D004147 ORTHO05D005606 2.3e-115 419.5 234 91.9
Psat7g134480 Pisum sativum HOM05D004147 ORTHO05D005606 2.3e-112 409.5 223 92.4
Sed0015400 Sechium edule HOM05D004147 ORTHO05D005606 1.5e-111 406.8 258 89.1
CDE02G2463 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 2.3e-107 392.9 265 73.2
Nitab4.5_0000075g0060 Nicotiana tabacum HOM05D004147 ORTHO05D005606 4.3e-106 388.7 276 73.6
Nitab4.5_0000890g0080 Nicotiana tabacum HOM05D004147 ORTHO05D005606 4.3e-106 388.7 276 73.6
CAN.G281.7 Capsicum annuum HOM05D004147 ORTHO05D005606 1.7e-102 376.7 274 73.7
Lsat_1_v5_gn_2_50601 Lactuca sativa HOM05D004147 ORTHO05D005606 3.2e-101 372.5 275 72.0
TAR623G0822 Trochodendron aralioides HOM05D004147 ORTHO05D005606 5.6e-98 361.7 206 89.3
unitig_62.g23531 Utricularia gibba HOM05D004147 ORTHO05D005606 1.1e-96 357.5 256 71.9
CDE08G0894 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 7.1e-93 344.7 240 70.4
AagrBONN_evm.TU.Sc2ySwM_368.1732 Anthoceros agrestis HOM05D004147 ORTHO05D005606 1.5e-90 337.0 280 62.5
Nn7g35773 Nelumbo nucifera HOM05D004147 ORTHO05D005606 8.1e-89 331.3 210 82.9
SEGI_18063 Sequoiadendron giganteum HOM05D004147 ORTHO05D005606 1.8e-88 330.1 267 65.5
Pp3c17_4780 Physcomitrium patens HOM05D004147 ORTHO05D005606 3.1e-88 329.3 280 61.1
BcaB02g10449 Brassica carinata HOM05D004147 ORTHO05D005606 4.0e-88 328.9 213 79.3
Pp3c14_13490 Physcomitrium patens HOM05D004147 ORTHO05D005606 1.2e-87 327.4 278 60.4
CDE02G0470 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 1.5e-87 327.0 247 68.4
Sabra03G0166400 Salix brachista HOM05D004147 ORTHO05D005606 1.9e-85 320.1 182 90.7
CBR_g3650 Chara braunii HOM05D004147 ORTHO05D005606 5.5e-85 318.5 295 58.3
Actinidia00922 Actinidia chinensis HOM05D004147 ORTHO05D005606 3.3e-82 309.3 191 83.2
CDE08G0994 Ceratophyllum demersum HOM05D004147 ORTHO05D005606 6.2e-81 305.1 203 71.4
Solyc01g049680.3 Solanum lycopersicum HOM05D004147 ORTHO05D005606 1.0e-78 297.7 182 83.0
SMO164G0008 Selaginella moellendorffii HOM05D004147 ORTHO05D005606 3.0e-75 286.2 264 58.3
Lj1A564T30 Lonicera japonica HOM05D004147 ORTHO05D005606 3.1e-72 276.2 246 66.3
Gorai.009G000700 Gossypium raimondii HOM05D004147 ORTHO05D005606 2.7e-68 263.1 148 92.6
unitig_52.g17528 Utricularia gibba HOM05D004147 ORTHO05D005606 4.8e-65 252.3 191 67.5
Sabra01G0000400 Salix brachista HOM05D004147 ORTHO05D005606 1.8e-48 197.2 116 87.1
Solyc01g049690.4 Solanum lycopersicum HOM05D004147 ORTHO05D005606 4.1e-48 196.1 96 96.9
Gorai.009G000600 Gossypium raimondii HOM05D004147 ORTHO05D005606 3.5e-47 193.0 129 77.5
HPP92_026678 Vanilla planifolia HOM05D004147 ORTHO05D005606 7.7e-47 191.8 104 86.5
CAN.G640.3 Capsicum annuum HOM05D004147 ORTHO05D005606 2.0e-42 177.2 128 71.1
CAN.G678.10 Capsicum annuum HOM05D004147 ORTHO05D005606 2.8e-41 173.3 104 81.7
Potri.013G061100 Populus trichocarpa HOM05D004147 ORTHO05D005606 6.3e-41 172.2 260 40.4
Lj1A564T31 Lonicera japonica HOM05D004147 ORTHO05D005606 1.6e-39 167.5 122 73.8
FAN25G3109 Fragaria x ananassa HOM05D004147 ORTHO05D005606 5.0e-38 162.5 78 100.0
MBI05_g14947_MAGBIO Magnolia biondii HOM05D000130 ORTHO05D002599 5.5e-37 159.1 94 83.0
PRCOL_00001079 Prasinoderma coloniale HOM05D004147 ORTHO05D005606 4.8e-33 146.0 269 33.1
unitig_52.g17527 Utricularia gibba HOM05D004147 ORTHO05D005606 8.3e-33 145.2 77 89.6
Sabra01G0000300 Salix brachista HOM05D004147 ORTHO05D005606 4.1e-32 142.9 116 77.6
Lsat_1_v5_gn_4_94280 Lactuca sativa HOM05D004147 ORTHO05D005606 4.2e-29 132.9 218 40.4
Oeu023697.1 Olea europaea HOM05D004147 ORTHO05D005606 4.7e-28 129.4 66 93.9
TWI32G1322 Tripterygium wilfordii HOM05D004147 ORTHO05D005606 4.7e-28 129.4 259 34.4
Cre06.g278208 Chlamydomonas reinhardtii HOM05D004147 ORTHO05D005606 1.0e-27 128.3 248 33.1
BolC2t11193H Brassica oleracea HOM05D004147 ORTHO05D005606 2.0e-26 124.0 119 61.3
BcaC03g17178 Brassica carinata HOM05D004147 ORTHO05D021856 3.4e-26 123.2 106 66.0
C08p28370 Brassica napus HOM05D004147 ORTHO05D021856 4.4e-26 122.9 119 61.3
BolC8t50447H Brassica oleracea HOM05D004147 ORTHO05D021856 4.4e-26 122.9 119 61.3
A03p64870 Brassica napus HOM05D004147 ORTHO05D005606 9.8e-26 121.7 187 42.8
BraA03t15549Z Brassica rapa HOM05D004147 ORTHO05D018802 6.3e-25 119.0 119 59.7
BolC5t32093H Brassica oleracea HOM05D004147 ORTHO05D021856 8.3e-25 118.6 119 60.5
C02p30750 Brassica napus HOM05D004147 ORTHO05D021856 3.1e-24 116.7 119 58.0
C05p33620 Brassica napus HOM05D004147 ORTHO05D021856 9.2e-24 115.2 119 59.7
BraA05t19995Z Brassica rapa HOM05D004147 ORTHO05D018802 1.0e-19 101.7 156 40.4
BcaC07g39671 Brassica carinata HOM05D004147 ORTHO05D005606 1.8e-19 100.9 88 63.6
BcaC07g38232 Brassica carinata HOM05D004147 ORTHO05D005606 8.9e-19 98.6 156 41.0
BraA09t36212Z Brassica rapa HOM05D004147 ORTHO05D018802 1.5e-18 97.8 83 63.9
TAR623G1050 Trochodendron aralioides HOM05D004147 ORTHO05D005606 3.2e-16 90.1 45 97.8
HanXRQChr10g0307541 Helianthus annuus HOM05D004147 ORTHO05D005606 2.3e-14 84.0 46 80.4
Lsat_1_v5_gn_8_97821 Lactuca sativa HOM05D004147 ORTHO05D005606 9.5e-13 78.6 43 86.0


User provided reference genes

Program Settings