Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 4.7e-258 894.0 455 100.0
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 1.7e-199 699.5 446 83.2
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 1.7e-154 550.1 489 63.6
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 5.5e-150 535.0 474 62.7
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 3.9e-148 528.9 474 63.9
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 1.8e-145 520.0 474 60.5
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.2e-142 508.8 474 60.1
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 6.7e-140 501.5 480 59.2
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 2.0e-136 490.0 469 58.8
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 5.9e-136 488.4 470 58.7
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 2.9e-135 486.1 474 58.6
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 6.5e-135 485.0 469 58.6
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 1.2e-133 480.7 479 57.4
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 6.1e-133 478.4 485 56.1
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.6e-128 463.8 597 47.9
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 1.0e-127 461.1 468 55.3
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 2.9e-127 459.5 477 55.6
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 6.5e-127 458.4 471 55.0
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 3.2e-126 456.1 472 54.4
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 5.5e-126 455.3 472 54.9
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 7.2e-126 454.9 471 55.6
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 6.1e-125 451.8 468 54.9
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 1.0e-124 451.1 470 55.3
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 1.0e-124 451.1 472 54.0
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 1.8e-124 450.3 466 55.2
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 2.3e-124 449.9 472 54.0
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 2.3e-124 449.9 474 54.9
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 6.8e-124 448.4 470 55.5
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 6.8e-124 448.4 467 54.0
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 1.5e-123 447.2 477 53.5
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.4e-123 446.0 506 52.2
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 5.9e-120 435.3 469 53.3
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 7.7e-120 434.9 495 50.9
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 6.5e-119 431.8 470 53.2
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 8.6e-119 431.4 504 52.6
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 1.1e-118 431.0 466 52.8
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 1.9e-118 430.3 464 52.6
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 1.2e-117 427.6 467 52.5
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 2.8e-117 426.4 476 52.7
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 1.0e-116 424.5 470 53.0
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 2.3e-116 423.3 407 57.2
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 3.0e-116 422.9 467 50.3
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 4.0e-116 422.5 483 51.8
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.5e-115 420.6 477 52.2
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 2.6e-115 419.9 471 51.0
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 4.4e-115 419.1 474 51.7
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 5.7e-115 418.7 473 51.2
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 1.3e-114 417.5 472 50.2
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 1.7e-114 417.2 482 51.9
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 6.3e-114 415.2 474 51.7
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 6.3e-114 415.2 472 50.2
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 1.6e-112 410.6 470 50.4
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 1.6e-112 410.6 475 50.1
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 4.5e-112 409.1 479 50.7
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 5.9e-112 408.7 479 50.7
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 1.0e-111 407.9 472 49.8
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 1.3e-111 407.5 473 51.0
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.9e-111 406.4 465 51.2
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 8.6e-111 404.8 457 51.6
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 8.6e-111 404.8 432 54.2
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 8.6e-111 404.8 496 50.0
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.1e-110 404.4 463 51.0
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 1.5e-110 404.1 456 51.3
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 2.5e-110 403.3 465 51.0
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 2.5e-110 403.3 471 49.7
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 3.3e-110 402.9 457 51.4
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 3.3e-110 402.9 457 51.4
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 4.3e-110 402.5 463 51.0
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 7.3e-110 401.7 463 51.0
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 7.3e-110 401.7 456 51.5
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 9.5e-110 401.4 479 49.7
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 1.6e-109 400.6 464 49.4
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 3.6e-109 399.4 470 49.1
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 3.6e-109 399.4 470 49.1
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 6.1e-109 398.7 467 50.1
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 8.0e-109 398.3 460 50.2
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 1.0e-108 397.9 473 49.3
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 3.0e-108 396.4 478 49.6
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 6.8e-108 395.2 479 49.7
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 1.5e-107 394.0 458 50.7
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 1.5e-107 394.0 471 48.8
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 2.0e-107 393.7 458 50.7
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 2.9e-106 389.8 465 47.5
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 4.9e-106 389.0 461 49.9
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.4e-105 386.7 474 47.0
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 1.2e-104 384.4 464 49.1
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 3.0e-103 379.8 354 57.3
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 6.6e-103 378.6 531 44.1
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 8.6e-103 378.3 431 52.2
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 8.6e-103 378.3 418 52.2
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 1.5e-102 377.5 471 48.8
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 1.9e-102 377.1 475 46.1
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.3e-102 376.3 481 48.2
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 3.3e-102 376.3 471 49.3
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 7.3e-102 375.2 486 46.5
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 8.0e-101 371.7 477 48.0
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 8.9e-100 368.2 608 41.1
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 8.9e-100 368.2 608 41.1
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 2.0e-99 367.1 478 47.1
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.0e-99 367.1 443 50.1
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 7.5e-99 365.2 472 46.8
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.7e-96 356.7 363 55.9
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 3.0e-95 353.2 470 45.5
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 1.2e-93 347.8 570 41.9
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 1.6e-93 347.4 404 51.0
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 6.2e-93 345.5 399 51.1
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 2.3e-92 343.6 476 45.4
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 7.5e-91 338.6 363 52.3
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 1.0e-87 328.2 472 45.1
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 5.8e-83 312.4 475 43.6
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 2.2e-82 310.5 361 52.6
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 3.8e-82 309.7 486 41.6
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 3.2e-81 306.6 233 70.8
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 1.6e-80 304.3 472 42.4
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 2.1e-80 303.9 473 42.7
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 2.0e-75 287.3 425 42.1
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 3.4e-75 286.6 423 41.6
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 2.2e-74 283.9 536 38.2
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 4.9e-74 282.7 298 55.4
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.1e-73 281.6 404 48.0
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 4.6e-72 276.2 464 42.9
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 1.3e-71 274.6 461 41.2
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.3e-70 269.6 343 50.7
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 1.6e-69 267.7 352 47.4
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.0e-68 263.1 297 50.8
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 3.2e-65 253.4 345 46.1
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 5.6e-62 242.7 272 52.2
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 2.4e-60 237.3 219 60.7
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 1.9e-57 227.6 415 38.1
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 5.6e-54 216.1 350 39.7
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 2.8e-53 213.8 198 55.1
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 2.4e-52 210.7 271 46.1
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 4.0e-52 209.9 206 54.9
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.5e-51 206.5 279 49.1
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 1.7e-50 204.5 170 58.8
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 5.5e-49 199.5 224 52.7
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 3.0e-47 193.7 238 50.8
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 6.9e-44 182.6 240 45.0
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 1.4e-36 158.3 167 52.7
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 1.4e-36 158.3 167 52.7
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 6.9e-36 156.0 272 40.8
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 1.0e-34 152.1 207 48.3
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 2.9e-34 150.6 120 62.5
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.6e-32 144.8 193 45.6
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 4.7e-32 143.3 232 44.8
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 8.5e-26 122.5 234 36.8
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 3.6e-24 117.1 235 36.2
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.5e-22 111.7 138 45.7
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 5.3e-20 103.2 177 37.3
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 1.9e-17 94.7 160 40.0
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 2.5e-17 94.4 89 60.7
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 3.6e-16 90.5 194 34.0
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 4.8e-13 80.1 77 53.2
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.4e-12 77.8 90 48.9
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 7.0e-12 76.3 73 53.4
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 2.0e-11 74.7 96 41.7
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 2.7e-11 74.3 160 31.9
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 2.7e-11 74.3 315 25.4
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 7.7e-11 72.8 81 45.7
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 7.7e-11 72.8 58 60.3
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 1.3e-10 72.0 141 38.3
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 5.0e-10 70.1 147 35.4
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.1e-09 68.9 122 38.5
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 1.2e-08 65.5 187 29.9
Lj1A897G42 Lonicera japonica HOM05D003810 ORTHO05D004416 2.7e-08 64.3 105 36.2
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 8.8e-07 59.3 53 52.8
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 1.5e-06 58.5 53 52.8
Potri.005G061366 Populus trichocarpa HOM05D003810 ORTHO05D004416 2.6e-06 57.8 85 44.7
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 9.8e-06 55.8 192 30.7


User provided reference genes

Program Settings