Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.1e-63 246.5 128 100.0
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 4.2e-31 138.3 131 64.1
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 2.7e-30 135.6 128 61.7
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 4.7e-30 134.8 130 58.5
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 1.8e-29 132.9 126 58.7
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 3.9e-29 131.7 131 59.5
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 3.9e-29 131.7 130 59.2
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 5.1e-29 131.3 130 59.2
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 5.1e-29 131.3 131 57.3
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 6.7e-29 131.0 130 58.5
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 8.8e-29 130.6 131 58.0
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 1.1e-28 130.2 126 59.5
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 1.1e-28 130.2 130 58.5
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 2.6e-28 129.0 130 56.9
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 3.3e-28 128.6 130 57.7
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 3.3e-28 128.6 130 57.7
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 3.3e-28 128.6 130 57.7
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 3.3e-28 128.6 122 56.6
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 4.4e-28 128.3 130 57.7
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 5.7e-28 127.9 130 57.7
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 1.7e-27 126.3 131 58.0
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 2.2e-27 125.9 130 60.0
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 2.8e-27 125.6 131 58.0
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 2.8e-27 125.6 127 55.9
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 3.7e-27 125.2 131 56.5
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 3.7e-27 125.2 122 54.1
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 4.8e-27 124.8 128 55.5
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 1.4e-26 123.2 131 58.0
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.8e-26 122.9 121 56.2
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 3.1e-26 122.1 131 55.7
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 4.1e-26 121.7 129 58.1
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 4.1e-26 121.7 127 58.3
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 7.0e-26 120.9 125 56.8
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 7.0e-26 120.9 125 54.4
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 2.0e-25 119.4 126 57.1
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 3.5e-25 118.6 125 56.8
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 4.5e-25 118.2 132 56.1
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 2.9e-24 115.5 135 51.9
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 3.8e-24 115.2 124 55.6
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 3.8e-24 115.2 135 51.9
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 5.0e-24 114.8 130 53.8
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 5.0e-24 114.8 131 55.7
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 6.5e-24 114.4 123 55.3
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.1e-23 113.6 126 51.6
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.1e-23 113.6 117 58.1
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 1.5e-23 113.2 133 49.6
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 1.5e-23 113.2 126 50.8
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 1.9e-23 112.8 127 50.4
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 2.5e-23 112.5 134 52.2
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 3.2e-23 112.1 130 54.6
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 4.2e-23 111.7 130 52.3
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 5.5e-23 111.3 127 51.2
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 7.2e-23 110.9 129 51.9
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 7.2e-23 110.9 130 51.5
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 7.2e-23 110.9 128 53.9
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 9.4e-23 110.5 130 52.3
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 1.6e-22 109.8 125 48.8
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 1.6e-22 109.8 131 52.7
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 1.6e-22 109.8 129 48.8
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 1.6e-22 109.8 128 55.5
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.7e-22 109.0 123 52.0
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 3.6e-22 108.6 127 47.2
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 8.0e-22 107.5 129 54.3
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.8e-21 106.3 97 60.8
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 2.3e-21 105.9 129 51.9
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 2.3e-21 105.9 126 50.0
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 3.0e-21 105.5 128 53.9
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 4.0e-21 105.1 125 48.8
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.0e-21 105.1 125 49.6
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.0e-21 105.1 125 48.8
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.0e-21 105.1 125 48.8
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.0e-21 105.1 125 48.8
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.0e-21 105.1 125 48.8
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 6.7e-21 104.4 130 50.8
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 8.8e-21 104.0 131 51.9
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 8.8e-21 104.0 129 48.1
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 1.1e-20 103.6 125 52.8
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 1.5e-20 103.2 129 51.2
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 1.5e-20 103.2 135 51.9
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 2.0e-20 102.8 126 53.2
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 2.0e-20 102.8 125 53.6
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 2.6e-20 102.4 122 48.4
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 2.6e-20 102.4 126 51.6
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 3.3e-20 102.1 129 48.8
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 5.7e-20 101.3 132 48.5
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 5.7e-20 101.3 125 52.8
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 9.7e-20 100.5 129 47.3
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 9.7e-20 100.5 123 47.2
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 9.7e-20 100.5 125 52.0
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 9.7e-20 100.5 133 52.6
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.7e-19 99.8 129 46.5
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 2.8e-19 99.0 130 53.1
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 3.7e-19 98.6 131 45.8
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.4e-18 96.7 129 49.6
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 1.4e-18 96.7 131 50.4
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 1.4e-18 96.7 126 45.2
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 1.8e-18 96.3 132 50.0
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 1.8e-18 96.3 130 50.0
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 2.4e-18 95.9 129 48.8
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 5.3e-18 94.7 118 44.9
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 9.1e-18 94.0 131 47.3
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 1.6e-17 93.2 103 53.4
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 2.0e-17 92.8 132 47.7
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 2.0e-17 92.8 127 44.1
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 3.5e-17 92.0 135 45.9
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 4.5e-17 91.7 130 46.2
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 5.9e-17 91.3 127 48.8
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 7.7e-17 90.9 130 45.4
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 1.3e-16 90.1 128 43.0
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 2.9e-16 89.0 76 65.8
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 3.8e-16 88.6 114 46.5
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 8.5e-16 87.4 135 48.1
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 4.2e-15 85.1 127 41.7
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 5.5e-15 84.7 128 45.3
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 1.2e-14 83.6 90 54.4
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 1.6e-14 83.2 75 58.7
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 3.6e-14 82.0 135 44.4
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 3.6e-14 82.0 135 44.4
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 6.1e-14 81.3 133 45.1
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 6.1e-14 81.3 133 45.1
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 6.1e-14 81.3 133 42.9
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 1.0e-13 80.5 92 52.2
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 1.8e-13 79.7 134 43.3
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 2.3e-13 79.3 134 43.3
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 3.0e-13 79.0 133 39.8
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 3.0e-13 79.0 125 41.6
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 4.0e-13 78.6 136 43.4
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 4.0e-13 78.6 131 40.5
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 4.0e-13 78.6 131 40.5
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 4.0e-13 78.6 131 40.5
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 8.8e-13 77.4 90 48.9
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.2e-12 77.0 91 48.4
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 2.6e-12 75.9 136 42.6
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 2.6e-12 75.9 138 44.2
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 3.4e-12 75.5 91 48.4
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 3.4e-12 75.5 173 33.5
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 3.4e-12 75.5 125 42.4
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 4.4e-12 75.1 138 43.5
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 7.5e-12 74.3 125 39.2
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 7.5e-12 74.3 116 44.0
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 9.8e-12 73.9 104 48.1
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 2.8e-11 72.4 67 52.2
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 6.3e-11 71.2 138 39.1
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 6.3e-11 71.2 126 41.3
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 8.3e-11 70.9 138 42.0
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 1.4e-10 70.1 67 49.3
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.4e-10 70.1 65 47.7
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 3.1e-10 68.9 65 47.7
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 3.1e-10 68.9 65 46.2
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 3.5e-09 65.5 37 83.8
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 3.5e-09 65.5 48 66.7
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 5.0e-08 61.6 111 45.9
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 8.5e-08 60.8 59 49.2
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 8.5e-08 60.8 73 37.0
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 1.5e-07 60.1 76 43.4
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 2.5e-07 59.3 55 58.2
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 5.5e-07 58.2 58 53.4
Solyc10g077120.3 Solanum lycopersicum HOM05D004549 ORTHO05D005390 3.6e-06 55.5 87 47.1
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 6.1e-06 54.7 59 49.2


User provided reference genes

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