Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G046900 Prunus persica HOM05D003810 ORTHO05D004416 1.9e-245 852.0 429 100.0
Prupe.5G213500 Prunus persica HOM05D003810 ORTHO05D004416 8.4e-201 703.7 446 83.2
Prupe.1G583500 Prunus persica HOM05D003810 ORTHO05D004416 1.2e-146 523.9 482 61.4
RcHm_v2.0_Chr7g0221221 Rosa chinensis HOM05D003810 ORTHO05D004416 1.1e-136 490.7 471 58.4
MD15G1441400 Malus domestica HOM05D003810 ORTHO05D004416 9.5e-136 487.6 471 60.1
FvH4_5g28910 Fragaria vesca HOM05D003810 ORTHO05D004416 3.1e-134 482.6 475 58.3
FAN04G0096 Fragaria x ananassa HOM05D003810 ORTHO05D004416 4.1e-131 472.2 475 57.9
CANSAT11G0157 Cannabis sativa HOM05D003810 ORTHO05D004416 5.6e-128 461.8 476 55.3
FAN08G2973 Fragaria x ananassa HOM05D003810 ORTHO05D004416 3.4e-125 452.6 475 56.2
CsaV3_4G027560 Cucumis sativus L. HOM05D003810 ORTHO05D004416 1.3e-124 450.7 468 55.1
Sed0019869 Sechium edule HOM05D003810 ORTHO05D004416 1.7e-124 450.3 465 55.9
Cfa016940 Carpinus fangiana HOM05D003810 ORTHO05D004416 3.7e-124 449.1 474 55.5
MELO3C020474.2 Cucumis melo HOM05D003810 ORTHO05D004416 6.4e-124 448.4 466 54.7
QL08p001596 Quercus lobata HOM05D003810 ORTHO05D004416 9.5e-120 434.5 480 52.7
Medtr1g090110 Medicago truncatula HOM05D003810 ORTHO05D004416 3.6e-119 432.6 462 53.7
Eucgr.J01409 Eucalyptus grandis HOM05D003810 ORTHO05D004416 6.2e-119 431.8 474 53.0
CiPaw.11G208700 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.4e-118 430.6 469 53.3
Phvul.007G134900 Phaseolus vulgaris HOM05D003810 ORTHO05D004416 6.8e-118 428.3 464 52.8
FAN18G3759 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.5e-117 427.2 598 46.3
VMungo0720G2836 Vigna mungo HOM05D003810 ORTHO05D004416 2.6e-117 426.4 464 52.6
Duzib150G1314 Durio zibethinus HOM05D003810 ORTHO05D004416 3.7e-116 422.5 471 51.4
FAN14G4445 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.3e-116 421.4 507 51.1
Gohir.D07G118250 Gossypium hirsutum HOM05D003810 ORTHO05D004416 8.3e-116 421.4 471 51.0
Thecc.09G267400 Theobroma cacao HOM05D003810 ORTHO05D004416 8.3e-116 421.4 471 51.2
Gorai.001G127200 Gossypium raimondii HOM05D003810 ORTHO05D004416 1.9e-115 420.2 471 51.0
Glyma.20G197500 Glycine max HOM05D003810 ORTHO05D004416 7.1e-115 418.3 463 52.5
GSVIVG01014785001 Vitis vinifera HOM05D003810 ORTHO05D004416 1.2e-114 417.5 475 52.8
Glyma.10G193000 Glycine max HOM05D003810 ORTHO05D004416 4.6e-114 415.6 463 52.7
Lj5g0018758 Lotus japonicus HOM05D003810 ORTHO05D004416 6.0e-114 415.2 462 53.5
PGR042G2745 Punica granatum HOM05D003810 ORTHO05D004416 6.6e-113 411.8 478 49.8
TPR.G13386 Trifolium pratense HOM05D003810 ORTHO05D004416 6.6e-113 411.8 467 51.0
Medtr6g071555 Medicago truncatula HOM05D003810 ORTHO05D004416 1.1e-112 411.0 466 51.7
arahy.Tifrunner.gnm1.ann1.KKS8QY Arachis hypogaea HOM05D003810 ORTHO05D004416 1.6e-111 407.1 460 51.5
Ca_10408_v3 Cicer arietinum L. HOM05D003810 ORTHO05D004416 2.8e-111 406.4 497 49.3
Psat6g170400 Pisum sativum HOM05D003810 ORTHO05D004416 6.2e-111 405.2 466 50.6
COL.COLO4_25217 Corchorus olitorius HOM05D003810 ORTHO05D004416 7.6e-109 398.3 465 50.3
Ciclev10007802m.g Citrus clementina HOM05D003810 ORTHO05D004416 1.3e-108 397.5 474 51.1
FvH4_6g25000 Fragaria vesca HOM05D003810 ORTHO05D004416 2.2e-108 396.7 409 55.5
Haze_09895 Corylus avellana HOM05D003810 ORTHO05D004416 4.9e-108 395.6 499 49.7
Atru.chr2.3847 Acer truncatum HOM05D003810 ORTHO05D004416 8.4e-108 394.8 471 49.0
TWI23G0485 Tripterygium wilfordii HOM05D003810 ORTHO05D004416 2.1e-106 390.2 473 48.4
HanXRQChr05g0160211 Helianthus annuus HOM05D003810 ORTHO05D004416 3.5e-106 389.4 468 46.8
Atru.chr12.1053 Acer truncatum HOM05D003810 ORTHO05D004416 7.8e-106 388.3 470 48.3
ClCG04G003010 Citrullus lanatus HOM05D003810 ORTHO05D004416 7.8e-106 388.3 468 50.0
Sc14g0003560 Simmondsia chinensis HOM05D003810 ORTHO05D004416 7.8e-106 388.3 473 49.3
Nn2g14662 Nelumbo nucifera HOM05D003810 ORTHO05D004416 1.5e-104 384.0 481 49.9
Lj3C711T10 Lonicera japonica HOM05D003810 ORTHO05D004416 5.6e-104 382.1 475 48.4
Dinv40895 Davidia involucrata HOM05D003810 ORTHO05D004416 7.3e-104 381.7 474 49.6
CSS0024914 Camellia sinensis var. sinensis HOM05D003810 ORTHO05D004416 9.6e-104 381.3 476 48.7
PSO063G0853 Papaver somniferum HOM05D003810 ORTHO05D004416 9.6e-104 381.3 474 48.9
Cpa.g.sc181.12 Carica papaya HOM05D003810 ORTHO05D004416 1.6e-103 380.6 429 51.0
Thhalv10011333m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 3.6e-103 379.4 464 48.9
Hma1.2p1_0193F.1_g084130 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 3.6e-103 379.4 485 47.6
PSO782G5597 Papaver somniferum HOM05D003810 ORTHO05D004416 4.8e-103 379.0 474 48.7
Rhsim04G0009500 Rhododendron simsii HOM05D003810 ORTHO05D004416 1.1e-102 377.9 475 47.6
Nitab4.5_0001622g0070 Nicotiana tabacum HOM05D003810 ORTHO05D004416 2.4e-102 376.7 475 47.2
MSTRG.13036 Avicennia marina HOM05D003810 ORTHO05D004416 3.1e-102 376.3 473 48.2
Nitab4.5_0000611g0250 Nicotiana tabacum HOM05D003810 ORTHO05D004416 9.0e-102 374.8 475 47.2
Aa31LG10G490 Aethionema arabicum HOM05D003810 ORTHO05D004416 1.3e-100 370.9 464 47.6
THA.LOC104815683 Tarenaya hassleriana HOM05D003810 ORTHO05D004416 1.3e-100 370.9 469 46.1
DCAR_017597 Daucus carota HOM05D003810 ORTHO05D004416 2.9e-100 369.8 494 47.0
AL1G63840 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 3.8e-100 369.4 464 47.6
Aqoxy3G00950 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 6.4e-100 368.6 479 47.8
C02p26210 Brassica napus HOM05D003810 ORTHO05D004416 8.4e-100 368.2 461 47.1
BolC2t08687H Brassica oleracea HOM05D003810 ORTHO05D004416 8.4e-100 368.2 461 47.1
Carub.0001s4426 Capsella rubella HOM05D003810 ORTHO05D004416 8.4e-100 368.2 464 47.2
AT3G61420 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.1e-99 367.9 461 46.6
CDE04G2581 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.1e-99 367.9 478 47.7
Sp5g24310 Schrenkiella parvula HOM05D003810 ORTHO05D004416 1.1e-99 367.9 460 47.4
AT1G55750 Arabidopsis thaliana HOM05D003810 ORTHO05D004416 1.4e-99 367.5 467 47.1
BcaC03g15064 Brassica carinata HOM05D003810 ORTHO05D004416 2.4e-99 366.7 461 46.9
Gohir.A07G114448 Gossypium hirsutum HOM05D003810 ORTHO05D004416 2.4e-99 366.7 347 56.2
BcaB05g24435 Brassica carinata HOM05D003810 ORTHO05D004416 4.2e-99 365.9 460 46.7
CAN.G492.44 Capsicum annuum HOM05D003810 ORTHO05D004416 2.1e-98 363.6 475 46.5
CARHR045410 Cardamine hirsuta HOM05D003810 ORTHO05D004416 3.5e-98 362.8 466 46.6
ECA246G2898 Erigeron canadensis HOM05D003810 ORTHO05D004416 4.6e-98 362.5 468 44.7
Cc00_g20590 Coffea canephora HOM05D003810 ORTHO05D004416 1.0e-97 361.3 473 46.7
Peaxi162Scf00212g00616 Petunia axillaris HOM05D003810 ORTHO05D004416 1.0e-97 361.3 474 45.8
AL5G43720 Arabidopsis lyrata HOM05D003810 ORTHO05D004416 1.3e-97 360.9 457 47.3
Solyc10g005900.3 Solanum lycopersicum HOM05D003810 ORTHO05D004416 1.7e-97 360.5 475 45.9
Sopen10g001850 Solanum pennellii HOM05D003810 ORTHO05D004416 1.7e-97 360.5 475 45.9
ATR0751G036 Amborella trichopoda HOM05D003810 ORTHO05D004416 6.6e-97 358.6 474 45.8
Os08g0338200 Oryza sativa ssp. japonica HOM05D003810 ORTHO05D004416 7.3e-96 355.1 476 45.4
A02p15760 Brassica napus HOM05D003810 ORTHO05D004416 9.6e-96 354.8 464 45.9
arahy.Tifrunner.gnm1.ann1.60T2A8 Arachis hypogaea HOM05D003810 ORTHO05D004416 1.6e-95 354.0 462 47.4
BraA02t06637Z Brassica rapa HOM05D003810 ORTHO05D004416 1.6e-95 354.0 464 45.9
Migut.H01729 Erythranthe guttata HOM05D003810 ORTHO05D004416 2.1e-95 353.6 472 44.9
Aqoxy2G00893 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 3.6e-95 352.8 479 47.0
AUR62017624 Chenopodium quinoa HOM05D003810 ORTHO05D004416 7.6e-93 345.1 469 45.6
Lsat_1_v5_gn_1_66020 Lactuca sativa HOM05D003810 ORTHO05D004416 1.3e-92 344.4 479 43.8
Lj3A773G17 Lonicera japonica HOM05D003810 ORTHO05D004416 1.7e-92 344.0 488 44.7
Manes.02G224100 Manihot esculenta HOM05D003810 ORTHO05D004416 1.7e-92 344.0 418 49.8
AUR62015172 Chenopodium quinoa HOM05D003810 ORTHO05D004416 2.9e-92 343.2 469 45.6
Potri.007G107400 Populus trichocarpa HOM05D003810 ORTHO05D004416 1.9e-91 340.5 477 43.8
TAR627G1185 Trochodendron aralioides HOM05D003810 ORTHO05D004416 2.4e-91 340.1 353 55.0
MBI15_g00877_MAGBIO Magnolia biondii HOM05D003810 ORTHO05D004416 7.9e-90 335.1 477 45.5
Sabra07G0088100 Salix brachista HOM05D003810 ORTHO05D004416 1.8e-89 334.0 532 41.2
TAR629G3163 Trochodendron aralioides HOM05D003810 ORTHO05D004416 6.7e-89 332.0 444 47.3
Actinidia00838 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.1e-88 331.3 425 48.0
HPP92_028601 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.5e-88 330.9 456 44.7
Ah.01g013210 Amaranthus hybridus HOM05D003810 ORTHO05D004416 2.5e-88 330.1 423 47.5
Zm00001eb172700 Zea mays HOM05D003810 ORTHO05D004416 2.8e-87 326.6 470 43.0
vmacro09609 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.8e-86 323.9 607 37.4
vmacro22299 Vaccinium macrocarpon HOM05D003810 ORTHO05D004416 1.8e-86 323.9 607 37.4
Lj1A897G41 Lonicera japonica HOM05D003810 ORTHO05D004416 2.9e-84 316.6 400 47.5
EL10Ac9g22878 Beta vulgaris HOM05D003810 ORTHO05D004416 1.6e-82 310.8 474 42.8
Potri.005G061432 Populus trichocarpa HOM05D003810 ORTHO05D004416 3.5e-82 309.7 346 52.0
SGA_v2.0_scaffold146G36126 Striga asiatica HOM05D003810 ORTHO05D004416 7.9e-82 308.5 471 42.7
Oeu062684.4 Olea europaea HOM05D003810 ORTHO05D004416 1.0e-81 308.1 571 38.9
unitig_61.g26129 Utricularia gibba HOM05D003810 ORTHO05D004416 2.3e-81 307.0 474 42.8
MD08G1246300 Malus domestica HOM05D003810 ORTHO05D004416 1.2e-77 294.7 209 73.2
Aqoxy7G03331 Aquilegia oxysepala HOM05D003810 ORTHO05D004416 1.3e-76 291.2 341 50.4
Mapoly0009s0093 Marchantia polymorpha HOM05D003810 ORTHO05D004416 2.3e-73 280.4 443 41.1
Lsat_1_v5_gn_9_33460 Lactuca sativa HOM05D003810 ORTHO05D004416 7.4e-72 275.4 477 39.2
AagrBONN_evm.TU.Sc2ySwM_117.3105 Anthoceros agrestis HOM05D003810 ORTHO05D004416 3.7e-71 273.1 470 38.9
FAN02G2818 Fragaria x ananassa HOM05D003810 ORTHO05D004416 6.9e-70 268.9 300 51.7
BcaB07g33855 Brassica carinata HOM05D003810 ORTHO05D004416 1.5e-69 267.7 415 42.4
RcHm_v2.0_Chr2g0090241 Rosa chinensis HOM05D003810 ORTHO05D004416 5.9e-69 265.8 466 42.1
SGA_v2.0_scaffold42G15939 Striga asiatica HOM05D003810 ORTHO05D004416 2.2e-68 263.8 510 37.3
Pp3c26_14480 Physcomitrium patens HOM05D003810 ORTHO05D004416 8.5e-68 261.9 425 40.0
Duzib168G0397 Durio zibethinus HOM05D003810 ORTHO05D004416 1.4e-65 254.6 294 51.4
FAN02G0111 Fragaria x ananassa HOM05D003810 ORTHO05D004416 8.8e-65 251.9 401 44.1
Dinv10375 Davidia involucrata HOM05D003810 ORTHO05D004416 7.4e-64 248.8 471 39.3
FAN05G0299 Fragaria x ananassa HOM05D003810 ORTHO05D010162 1.5e-61 241.1 215 62.3
QL04p000617 Quercus lobata HOM05D003810 ORTHO05D004416 3.4e-61 240.0 346 45.1
FAN02G0356 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.0e-60 238.4 336 46.4
BcaC08g42928 Brassica carinata HOM05D003810 ORTHO05D004416 2.1e-58 230.7 345 44.3
Lalb_Chr06g0169751 Lupinus albus HOM05D003810 ORTHO05D004416 2.0e-56 224.2 265 50.9
Thhalv10011448m.g Eutrema salsugineum HOM05D003810 ORTHO05D004416 2.0e-53 214.2 382 38.7
SHI21694 Sapria himalayana HOM05D003810 ORTHO05D004416 6.5e-52 209.1 236 49.2
Lalb_Chr06g0169761 Lupinus albus HOM05D003810 ORTHO05D004416 4.2e-51 206.5 202 52.5
CiPaw.14G066700 Carya illinoinensis HOM05D003810 ORTHO05D004416 9.4e-51 205.3 209 53.1
SMO228G0023 Selaginella moellendorffii HOM05D003810 ORTHO05D004416 1.0e-49 201.8 347 39.2
BolC6t35297H Brassica oleracea HOM05D003810 ORTHO05D004416 6.3e-47 192.6 266 45.5
CARHR219980 Cardamine hirsuta HOM05D003810 ORTHO05D004416 1.9e-43 181.0 228 48.7
CBR_g28523 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-42 177.9 247 43.7
CiPaw.14G066900 Carya illinoinensis HOM05D003810 ORTHO05D004416 1.0e-41 175.3 218 49.1
FAN09G2262 Fragaria x ananassa HOM05D003810 ORTHO05D004416 1.5e-40 171.4 274 44.2
CAN.G306.2 Capsicum annuum HOM05D003810 ORTHO05D004416 1.8e-38 164.5 172 52.9
CAN.G306.3 Capsicum annuum HOM05D003810 ORTHO05D004416 1.8e-38 164.5 172 52.9
Rhsim05G0134800 Rhododendron simsii HOM05D003492 ORTHO05D005115 3.5e-37 160.2 284 41.2
HPP92_016056 Vanilla planifolia HOM05D003810 ORTHO05D004416 1.2e-34 151.8 120 64.2
Lj3g0026478 Lotus japonicus HOM05D003810 ORTHO05D004416 2.1e-34 151.0 186 52.2
Hma1.2p1_2995F.1_g331430 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 1.4e-30 138.3 196 44.4
Hund17709 Selenicereus undatus HOM05D003810 ORTHO05D004416 4.0e-25 120.2 233 36.1
Hma1.2p1_2995F.1_g331440 Hydrangea macrophylla HOM05D003810 ORTHO05D004416 6.3e-23 112.8 227 37.9
Actinidia03659 Actinidia chinensis HOM05D003810 ORTHO05D004416 1.0e-20 105.5 143 43.4
ECA233G1945 Erigeron canadensis HOM05D000449 ORTHO05D003939 5.0e-20 103.2 234 33.8
QL12p013194 Quercus lobata HOM05D003810 ORTHO05D004416 8.6e-20 102.4 162 40.7
CAN.G790.44 Capsicum annuum HOM05D000872 ORTHO05D000777 9.8e-16 89.0 194 34.0
MD08G1246400 Malus domestica HOM05D003810 ORTHO05D004416 4.9e-15 86.7 87 57.5
CAN.G1328.7 Capsicum annuum HOM05D003810 ORTHO05D004416 2.4e-14 84.3 77 57.1
CAN.G312.5 Capsicum annuum HOM05D003810 ORTHO05D000001 3.5e-13 80.5 73 57.5
Oeu005536.2 Olea europaea HOM05D003810 ORTHO05D004416 1.0e-12 79.0 162 37.7
CAN.G1057.19 Capsicum annuum HOM05D000222 ORTHO05D004416 1.7e-12 78.2 78 52.6
CAN.G289.45 Capsicum annuum HOM05D002177 ORTHO05D004416 3.9e-12 77.0 81 49.4
SGA_v2.0_scaffold126G33829 Striga asiatica HOM05D003810 ORTHO05D004416 6.6e-12 76.3 168 33.9
PRCOL_00004489 Prasinoderma coloniale HOM05D003810 ORTHO05D004416 3.3e-11 73.9 239 27.6
MD08G1246200 Malus domestica HOM05D003810 ORTHO05D004416 5.6e-11 73.2 152 36.2
Hund08475 Selenicereus undatus HOM05D000185 ORTHO05D000105 5.6e-11 73.2 58 58.6
MCO14G434 Micromonas commoda HOM05D003810 ORTHO05D004416 9.5e-11 72.4 188 31.9
Gohir.A07G114432 Gossypium hirsutum HOM05D003810 ORTHO05D004416 8.1e-10 69.3 89 46.1
SHI21692 Sapria himalayana HOM05D003810 ORTHO05D004416 1.8e-09 68.2 99 40.4
CAN.G479.68 Capsicum annuum HOM05D000222 ORTHO05D004387 4.4e-08 63.5 53 58.5
CAN.G11.19 Capsicum annuum HOM05D003810 ORTHO05D004416 7.5e-08 62.8 53 56.6
CDE07G1690 Ceratophyllum demersum HOM05D003810 ORTHO05D004416 1.3e-07 62.0 125 39.2
Lsat_1_v5_gn_2_75840 Lactuca sativa HOM05D001134 ORTHO05D004416 4.1e-06 57.0 108 33.3
Nitab4.5_0001303g0160 Nicotiana tabacum HOM05D003810 ORTHO05D004416 4.1e-06 57.0 192 30.2


User provided reference genes

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