Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 2940.6 1481 100.0
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 2466.0 1518 80.7
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 2272.3 1515 75.6
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 2199.9 1502 74.0
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 2175.2 1520 72.9
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 2088.5 1506 70.6
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 2044.2 1515 68.3
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1986.5 1519 66.1
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1947.6 1553 65.4
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1924.8 1514 64.9
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1902.9 1515 65.7
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1893.6 1516 64.0
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1865.1 1516 61.9
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1841.2 1518 62.1
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1827.8 1518 61.6
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1792.7 1520 61.2
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1791.2 1461 62.4
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1790.0 1535 60.7
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1786.9 1517 60.7
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1786.2 1524 61.4
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1780.4 1522 61.2
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1776.9 1541 60.6
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1776.1 1519 60.6
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1775.4 1517 60.5
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1774.6 1517 61.0
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1754.6 1521 60.7
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1754.6 1518 59.9
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1747.3 1621 57.6
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1739.9 1518 59.7
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1737.2 1519 59.6
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1727.2 1512 59.8
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1724.9 1518 59.6
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1708.0 1525 57.3
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1701.0 1516 59.4
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1690.2 1202 70.9
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1689.1 1536 58.0
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1689.1 1536 58.0
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1684.8 1524 56.6
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1679.1 1440 61.0
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1678.7 1524 56.5
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1661.0 1524 57.9
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1637.9 1530 56.9
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1632.5 1122 74.2
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1624.0 1512 55.3
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1617.4 1512 55.2
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1604.7 1289 62.9
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1604.3 1511 56.5
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1601.6 1520 55.5
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1592.4 1523 55.3
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1587.8 1545 54.8
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1585.9 1521 54.7
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1553.1 1510 53.4
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1553.1 1518 55.1
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1550.0 1517 54.6
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1542.3 1521 54.5
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1536.2 1522 53.6
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1536.2 1511 54.5
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1534.2 1510 54.3
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1516.5 1509 53.6
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1512.7 1532 51.9
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1494.6 1243 62.2
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1483.8 1515 51.9
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1481.5 1537 51.5
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1449.1 1526 53.1
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 1421.0 1518 50.9
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1411.0 1465 51.2
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1408.3 1566 50.8
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 1407.9 1525 51.3
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 1402.5 1523 51.1
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 1392.9 1522 50.7
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 1376.7 1522 50.2
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1368.2 1522 50.1
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1364.4 1762 44.4
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1362.8 1509 48.5
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1362.4 1518 49.8
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 1359.7 1523 49.7
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1357.4 1521 49.6
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1354.0 1510 48.3
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1352.4 1550 48.9
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 1348.6 1522 50.3
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1343.9 1550 48.6
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 1340.9 1513 49.8
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1316.6 1405 51.9
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1304.3 1541 48.0
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1284.6 1554 46.6
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1283.1 1163 58.6
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 0.0e+00 1259.6 1054 62.0
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 1250.3 1296 52.2
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1240.3 1106 58.3
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 0.0e+00 1224.9 1134 55.9
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1206.0 1525 45.3
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 0.0e+00 1099.7 989 57.6
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 6.6e-261 905.2 1148 44.4
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 3.6e-243 846.3 1543 35.7
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.7e-240 837.4 1152 41.5
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 6.2e-227 792.3 1550 35.2
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 5.3e-226 789.3 602 66.3
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 1.2e-225 788.1 1027 44.6
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 4.9e-224 782.7 1545 33.7
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 2.1e-222 777.3 574 67.8
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 9.0e-218 761.9 992 44.7
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 9.0e-210 735.3 573 64.7
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 2.3e-205 720.7 638 59.7
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 5.7e-204 716.1 478 76.6
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.4e-202 711.4 619 59.6
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 1.8e-197 694.5 1030 41.5
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.1e-194 685.3 601 58.9
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 4.1e-194 683.3 1034 41.5
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 9.1e-194 682.2 1035 41.3
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 4.1e-186 656.8 1378 33.9
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 2.9e-147 527.7 578 49.8
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 4.0e-133 480.7 421 63.9
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 2.4e-130 471.5 565 44.8
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 1.6e-126 458.8 1053 32.7
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.4e-125 454.9 593 44.4
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 5.8e-124 450.3 525 48.2
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 1.0e-112 412.9 456 54.4
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-103 382.9 991 29.1
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 6.9e-101 373.6 505 41.4
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 4.2e-98 364.4 550 40.2
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 5.5e-98 364.0 213 82.2
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 3.8e-91 341.3 254 70.9
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 4.2e-90 337.8 376 49.7
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 1.6e-86 325.9 456 40.1
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 1.5e-84 319.3 327 54.1
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 2.7e-81 308.5 319 50.2
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 2.5e-79 302.0 284 56.3
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 1.3e-78 299.7 774 30.2
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 4.2e-74 284.6 315 47.9
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 2.3e-72 278.9 276 53.6
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.5e-68 266.2 332 43.1
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 7.7e-68 263.8 196 69.9
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 3.2e-66 258.5 389 39.3
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 8.0e-65 253.8 183 69.9
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 1.4e-64 253.1 476 35.3
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 6.7e-64 250.8 363 40.2
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 9.4e-58 230.3 192 56.8
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 3.0e-56 225.3 222 53.2
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 5.7e-55 221.1 288 44.8
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 2.4e-53 215.7 254 49.2
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 8.0e-49 200.7 134 70.1
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 2.0e-47 196.1 311 37.3
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 3.8e-43 181.8 195 52.3
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 6.6e-43 181.0 123 68.3
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 4.0e-40 171.8 146 56.8
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 4.9e-38 164.9 391 33.5
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 1.2e-36 160.2 117 60.7
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 5.9e-36 157.9 124 60.5
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 4.3e-34 151.8 211 44.5
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 4.3e-34 151.8 194 50.5
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 6.1e-33 147.9 98 76.5
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 3.1e-32 145.6 98 75.5
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 2.0e-31 142.9 104 67.3
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 2.9e-30 139.0 117 57.3
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 5.2e-24 118.2 104 55.8
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 1.2e-20 107.1 681 22.9
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 6.0e-20 104.8 251 27.5
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 2.8e-09 69.3 61 49.2
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 4.7e-09 68.6 68 51.5
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 4.7e-09 68.6 175 30.9
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 3.4e-07 62.4 72 51.4
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 3.4e-07 62.4 42 66.7
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 6.4e-06 58.2 47 59.6


User provided reference genes

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