Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G280600 Prunus persica HOM05D003684 ORTHO05D004428 0.0e+00 1412.1 723 100.0
RcHm_v2.0_Chr3g0485021 Rosa chinensis HOM05D003684 ORTHO05D004428 0.0e+00 1176.4 711 85.5
FvH4_1g25880 Fragaria vesca HOM05D003684 ORTHO05D004428 0.0e+00 1135.2 711 83.0
FAN19G3168 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1118.2 711 82.3
FAN28G1615 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1112.8 711 81.7
MD15G1140800 Malus domestica HOM05D003684 ORTHO05D004428 0.0e+00 1099.0 758 77.2
FAN26G1029 Fragaria x ananassa HOM05D003684 ORTHO05D004428 0.0e+00 1093.6 711 80.3
FAN23G1204 Fragaria x ananassa HOM05D003684 ORTHO05D004428 2.5e-311 1071.6 711 79.5
Cfa020930 Carpinus fangiana HOM05D003684 ORTHO05D004428 4.0e-304 1047.7 715 76.9
CiPaw.16G119400 Carya illinoinensis HOM05D003684 ORTHO05D004428 2.9e-294 1015.0 715 75.0
Duzib213G0690 Durio zibethinus HOM05D003684 ORTHO05D004428 8.4e-286 986.9 725 73.4
Manes.13G154400 Manihot esculenta HOM05D003684 ORTHO05D004428 1.2e-284 983.0 724 73.5
COL.COLO4_36995 Corchorus olitorius HOM05D003684 ORTHO05D004428 2.1e-281 972.2 727 72.8
Dinv26831 Davidia involucrata HOM05D003684 ORTHO05D004428 9.0e-280 966.8 728 72.8
Potri.018G145560 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.5e-279 966.1 725 71.2
Potri.004G135800 Populus trichocarpa HOM05D003684 ORTHO05D004428 3.4e-279 964.9 719 72.3
Potri.T044700 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.2e-278 962.2 725 70.9
Glyma.10G175900 Glycine max HOM05D003684 ORTHO05D004428 4.9e-278 961.1 732 70.6
Phvul.007G114500 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 6.0e-276 954.1 733 70.4
CsaV3_2G019660 Cucumis sativus L. HOM05D003684 ORTHO05D004428 7.9e-276 953.7 716 70.7
VMungo0720G1706 Vigna mungo HOM05D003684 ORTHO05D004428 1.8e-275 952.6 717 70.7
Thecc.07G170900 Theobroma cacao HOM05D003684 ORTHO05D004428 2.5e-274 948.7 726 72.0
Gorai.002G106900 Gossypium raimondii HOM05D003684 ORTHO05D004428 2.8e-273 945.3 725 71.4
Atru.chr3.1442 Acer truncatum HOM05D003684 ORTHO05D004428 6.9e-272 940.6 720 70.7
Duzib187G1616 Durio zibethinus HOM05D003684 ORTHO05D004428 1.0e-270 936.8 725 71.3
TWI31G1361 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 2.2e-270 935.6 716 69.4
Sed0026164 Sechium edule HOM05D003684 ORTHO05D004428 2.9e-270 935.3 723 70.1
Phvul.004G132300 Phaseolus vulgaris HOM05D003684 ORTHO05D004428 6.5e-270 934.1 720 70.0
Sabra04G0082300 Salix brachista HOM05D003684 ORTHO05D004428 1.9e-269 932.6 738 69.6
Lj5g0014818 Lotus japonicus HOM05D003684 ORTHO05D004428 3.5e-268 928.3 722 68.4
Ciclev10024915m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.1e-266 923.3 722 69.7
Glyma.09G157300 Glycine max HOM05D003684 ORTHO05D004428 1.1e-266 923.3 719 70.2
Lalb_Chr06g0168741 Lupinus albus HOM05D003684 ORTHO05D004428 1.6e-265 919.5 722 68.8
TAR381G1133 Trochodendron aralioides HOM05D003684 ORTHO05D004428 6.3e-265 917.5 721 68.2
PGR119G1631 Punica granatum HOM05D003684 ORTHO05D004428 2.4e-264 915.6 722 69.4
Glyma.20G214600 Glycine max HOM05D003684 ORTHO05D004428 1.2e-263 913.3 732 68.9
Glyma.16G207900 Glycine max HOM05D003684 ORTHO05D004428 2.9e-262 908.7 719 68.8
Ca_09907_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 2.3e-259 899.0 758 66.8
arahy.Tifrunner.gnm1.ann1.554WMS Arachis hypogaea HOM05D003684 ORTHO05D004428 2.4e-256 889.0 723 66.9
Gohir.A01G097200 Gossypium hirsutum HOM05D003684 ORTHO05D004428 9.0e-256 887.1 725 68.3
arahy.Tifrunner.gnm1.ann1.88FPG1 Arachis hypogaea HOM05D003684 ORTHO05D004428 1.5e-255 886.3 723 66.9
Psat6g111880 Pisum sativum HOM05D003684 ORTHO05D004428 5.1e-251 871.3 744 64.7
Lalb_Chr02g0149761 Lupinus albus HOM05D003684 ORTHO05D004428 1.1e-250 870.2 722 66.2
Gohir.D01G081800 Gossypium hirsutum HOM05D003684 ORTHO05D004428 3.4e-247 858.6 628 73.2
Lalb_Chr21g0311771 Lupinus albus HOM05D003684 ORTHO05D004428 8.5e-246 854.0 722 65.1
arahy.Tifrunner.gnm1.ann1.XFQ1DZ Arachis hypogaea HOM05D003684 ORTHO05D004428 1.3e-241 840.1 734 64.7
VMungo0464G0733 Vigna mungo HOM05D003684 ORTHO05D004428 1.3e-238 830.1 718 64.9
Solyc05g056340.3 Solanum lycopersicum HOM05D003684 ORTHO05D004428 1.6e-236 823.2 723 62.7
Sopen05g034730 Solanum pennellii HOM05D003684 ORTHO05D004428 2.7e-236 822.4 723 62.5
TWI79G1581 Tripterygium wilfordii HOM05D003684 ORTHO05D004428 6.1e-236 821.2 721 63.4
Oeu063702.1 Olea europaea HOM05D003684 ORTHO05D004428 4.4e-234 815.1 729 62.1
CAN.G1156.25 Capsicum annuum HOM05D003684 ORTHO05D004428 2.2e-233 812.8 770 58.8
Medtr1g077090 Medicago truncatula HOM05D003684 ORTHO05D004428 2.9e-230 802.4 742 60.9
Ca_25251_v3 Cicer arietinum L. HOM05D003684 ORTHO05D004428 9.4e-229 797.3 741 62.2
THA.LOC104818396 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 8.0e-228 794.3 769 58.6
Aqoxy5G02639 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 2.4e-224 782.7 721 62.0
Lj2g0008338 Lotus japonicus HOM05D003684 ORTHO05D004428 7.0e-224 781.2 715 62.2
THA.LOC104800528 Tarenaya hassleriana HOM05D003684 ORTHO05D004428 1.9e-221 773.1 770 57.1
Actinidia19941 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.4e-219 766.9 738 61.1
Migut.M00001 Erythranthe guttata HOM05D003684 ORTHO05D004428 1.7e-217 760.0 741 59.6
ClCG02G000160 Citrullus lanatus HOM05D003684 ORTHO05D004428 2.8e-217 759.2 716 60.6
Aa31LG3G18080 Aethionema arabicum HOM05D003684 ORTHO05D004428 4.9e-217 758.4 782 57.5
Potri.T044400 Populus trichocarpa HOM05D003684 ORTHO05D004428 7.7e-215 751.1 628 66.1
Peaxi162Scf00819g00027 Petunia axillaris HOM05D003684 ORTHO05D004428 7.3e-213 744.6 747 58.5
Rhsim10G0125000 Rhododendron simsii HOM05D003684 ORTHO05D004428 1.0e-211 740.7 889 53.2
Medtr6g065070 Medicago truncatula HOM05D003684 ORTHO05D004428 1.7e-209 733.4 679 61.3
Ah.06g188290 Amaranthus hybridus HOM05D003684 ORTHO05D004428 3.7e-209 732.3 726 59.1
EL10Ac4g09714 Beta vulgaris HOM05D003684 ORTHO05D004428 1.4e-208 730.3 728 60.0
CARHR204550 Cardamine hirsuta HOM05D003684 ORTHO05D004428 9.2e-208 727.6 818 53.9
SGA_v2.0_scaffold12G06270 Striga asiatica HOM05D003684 ORTHO05D004428 2.7e-207 726.1 735 58.2
Peaxi162Scf00353g00740 Petunia axillaris HOM05D003684 ORTHO05D004428 6.6e-206 721.5 721 58.3
MSTRG.23231 Avicennia marina HOM05D003684 ORTHO05D004428 4.7e-204 715.3 731 57.6
Carub.0006s0737 Capsella rubella HOM05D003684 ORTHO05D004428 4.0e-203 712.2 829 52.4
Thhalv10012626m.g Eutrema salsugineum HOM05D003684 ORTHO05D004428 7.5e-202 708.0 828 52.4
TPR.G40356 Trifolium pratense HOM05D003684 ORTHO05D004428 4.1e-200 702.2 721 58.0
Hund21769 Selenicereus undatus HOM05D003684 ORTHO05D004428 2.7e-199 699.5 729 58.7
AL6G18920 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 1.7e-198 696.8 837 51.3
CANSAT54G1806 Cannabis sativa HOM05D003684 ORTHO05D004428 1.5e-197 693.7 748 58.4
ECA248G2431 Erigeron canadensis HOM05D003684 ORTHO05D004428 2.9e-193 679.5 716 57.7
Sp6g34450 Schrenkiella parvula HOM05D003684 ORTHO05D004428 4.9e-193 678.7 833 50.8
AUR62000586 Chenopodium quinoa HOM05D003684 ORTHO05D004428 4.3e-189 665.6 725 57.2
CiPaw.15G185900 Carya illinoinensis HOM05D003684 ORTHO05D004428 3.1e-187 659.4 445 78.4
AT5G08450 Arabidopsis thaliana HOM05D003684 ORTHO05D004428 1.2e-186 657.5 837 49.3
BolC3t12968H Brassica oleracea HOM05D003684 ORTHO05D004428 2.6e-186 656.4 803 51.7
A03p03860 Brassica napus HOM05D003684 ORTHO05D004428 2.9e-185 652.9 807 51.9
HanXRQChr11g0336971 Helianthus annuus HOM05D003684 ORTHO05D004428 4.9e-185 652.1 664 58.6
Os07g0477500 Oryza sativa ssp. japonica HOM05D003684 ORTHO05D004428 4.9e-185 652.1 706 55.8
BcaB01g05594 Brassica carinata HOM05D003684 ORTHO05D004428 1.4e-184 650.6 728 55.2
C03p04350 Brassica napus HOM05D003684 ORTHO05D004428 1.4e-184 650.6 804 51.7
BraA03t09733Z Brassica rapa HOM05D003684 ORTHO05D004428 2.4e-184 649.8 816 51.3
Nitab4.5_0000496g0270 Nicotiana tabacum HOM05D003684 ORTHO05D004428 4.6e-183 645.6 722 54.3
TPR.G16631 Trifolium pratense HOM05D003684 ORTHO05D004428 1.1e-179 634.4 465 72.5
Nn1g08436 Nelumbo nucifera HOM05D003684 ORTHO05D004428 2.2e-177 626.7 660 55.8
Nitab4.5_0006957g0020 Nicotiana tabacum HOM05D003684 ORTHO05D004428 3.8e-177 625.9 726 53.4
vmacro12735 Vaccinium macrocarpon HOM05D003684 ORTHO05D004428 4.9e-177 625.5 954 45.7
HPP92_003712 Vanilla planifolia HOM05D003684 ORTHO05D004428 4.9e-177 625.5 722 51.4
CDE08G0027 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.3e-174 617.5 717 50.8
GSVIVG01000253001 Vitis vinifera HOM05D003684 ORTHO05D004428 2.8e-172 609.8 372 84.7
AUR62006943 Chenopodium quinoa HOM05D003684 ORTHO05D004428 1.5e-170 604.0 733 52.5
Lsat_1_v5_gn_1_130380 Lactuca sativa HOM05D003684 ORTHO05D004428 5.8e-170 602.1 737 52.5
unitig_736.g22645 Utricularia gibba HOM05D003684 ORTHO05D004428 7.6e-170 601.7 714 51.5
Psat0s3859g0040 Pisum sativum HOM05D003684 ORTHO05D004428 3.9e-166 589.3 713 51.5
PSO170G2972 Papaver somniferum HOM05D003684 ORTHO05D004428 1.1e-165 587.8 828 47.7
Zm00001eb178520 Zea mays HOM05D003684 ORTHO05D004428 2.5e-165 586.6 709 52.3
Zm00001eb108610 Zea mays HOM05D003684 ORTHO05D004428 2.4e-163 580.1 710 52.1
PSO782G3749 Papaver somniferum HOM05D003684 ORTHO05D004428 9.9e-162 574.7 821 47.0
unitig_899.g14642 Utricularia gibba HOM05D003684 ORTHO05D004428 5.5e-160 568.9 710 50.7
Haze_19362 Corylus avellana HOM05D003684 ORTHO05D004428 8.2e-156 555.1 454 68.3
MSTRG.2470 Avicennia marina HOM05D003684 ORTHO05D004428 2.2e-153 547.0 607 53.9
SHI11408 Sapria himalayana HOM05D003684 ORTHO05D004428 2.2e-153 547.0 737 49.0
HPP92_003711 Vanilla planifolia HOM05D003684 ORTHO05D004428 1.8e-139 500.7 645 47.9
DCAR_009623 Daucus carota HOM05D003684 ORTHO05D004428 6.9e-139 498.8 311 81.0
AL6G19100 Arabidopsis lyrata HOM05D003684 ORTHO05D004428 2.5e-136 490.3 1000 37.9
Sabra19G0000700 Salix brachista HOM05D003684 ORTHO05D004428 1.8e-131 474.2 266 87.2
Cpa.g.sc138.52 Carica papaya HOM05D003684 ORTHO05D004428 9.1e-131 471.9 274 85.0
MELO3C023205.2 Cucumis melo HOM05D003684 ORTHO05D004428 1.0e-129 468.4 451 58.3
Sabra19G0012100 Salix brachista HOM05D003684 ORTHO05D004428 5.2e-126 456.1 254 87.8
Sc09g0001960 Simmondsia chinensis HOM05D003684 ORTHO05D004428 3.7e-124 449.9 248 88.7
BcaB08g37259 Brassica carinata HOM05D003684 ORTHO05D004428 1.4e-118 431.4 324 69.4
SalBow8G3946 Salvia bowleyana HOM05D003684 ORTHO05D004428 4.8e-116 422.9 309 70.9
BraA10t44878Z Brassica rapa HOM05D003684 ORTHO05D004428 2.0e-114 417.5 259 79.5
Sabra19G0011700 Salix brachista HOM05D003684 ORTHO05D004428 4.5e-114 416.4 461 54.9
A10p28300 Brassica napus HOM05D003684 ORTHO05D004428 1.3e-113 414.8 259 79.2
C09p68560 Brassica napus HOM05D003684 ORTHO05D004428 2.2e-113 414.1 259 79.2
Cc07_g19760 Coffea canephora HOM05D003684 ORTHO05D004428 1.1e-112 411.8 248 79.4
Cpa.g.sc138.51 Carica papaya HOM05D003684 ORTHO05D004428 4.2e-112 409.8 363 64.5
Sc06g0005260 Simmondsia chinensis HOM05D003684 ORTHO05D004428 1.6e-111 407.9 422 55.2
BolC9t59599H Brassica oleracea HOM05D003684 ORTHO05D004428 3.4e-109 400.2 260 77.3
Oeu034403.1 Olea europaea HOM05D003684 ORTHO05D004428 3.4e-109 400.2 443 53.0
Potri.018G145546 Populus trichocarpa HOM05D003684 ORTHO05D004428 4.4e-109 399.8 241 84.6
PGSC0003DMG400023330 Solanum tuberosum HOM05D003684 ORTHO05D004428 3.5e-106 390.2 458 51.5
ATR1136G078 Amborella trichopoda HOM05D003684 ORTHO05D004428 7.7e-106 389.0 270 69.6
Pp3c3_32800 Physcomitrium patens HOM05D003684 ORTHO05D004428 1.2e-103 381.7 313 63.3
DCAR_019948 Daucus carota HOM05D003684 ORTHO05D004428 2.8e-103 380.6 283 66.8
Lj2C616T2 Lonicera japonica HOM05D003684 ORTHO05D004428 3.6e-103 380.2 573 49.4
Actinidia36575 Actinidia chinensis HOM05D003684 ORTHO05D004428 1.8e-102 377.9 316 65.8
Potri.018G145542 Populus trichocarpa HOM05D003684 ORTHO05D004428 2.6e-101 374.0 351 60.4
CSS0015943 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 3.5e-98 363.6 478 51.7
SMO356G0426 Selaginella moellendorffii HOM05D003684 ORTHO05D004428 1.7e-97 361.3 345 59.7
Lj2C616G3 Lonicera japonica HOM05D003684 ORTHO05D004428 1.5e-96 358.2 214 84.1
CDE02G3206 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.2e-95 355.1 603 40.0
Pp3c8_5360 Physcomitrium patens HOM05D003684 ORTHO05D004428 3.4e-93 347.1 423 50.4
Oeu034404.1 Olea europaea HOM05D003684 ORTHO05D004428 7.5e-93 345.9 201 86.1
Pp3c3_30960 Physcomitrium patens HOM05D003684 ORTHO05D004428 9.2e-91 339.0 301 60.1
DCAR_009622 Daucus carota HOM05D003684 ORTHO05D004428 1.7e-89 334.7 415 51.1
SGA_v2.0_scaffold51G18855 Striga asiatica HOM05D003684 ORTHO05D004428 8.9e-86 322.4 268 60.1
AagrBONN_evm.TU.Sc2ySwM_228.5259 Anthoceros agrestis HOM05D003684 ORTHO05D004428 1.3e-84 318.5 340 51.8
HPP92_007640 Vanilla planifolia HOM05D003684 ORTHO05D004428 8.3e-84 315.8 565 37.5
MBI03_g18673_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 7.8e-82 309.3 182 83.5
Mapoly0050s0019 Marchantia polymorpha HOM05D003684 ORTHO05D004428 1.6e-79 301.6 642 37.2
Sc09g0001970 Simmondsia chinensis HOM05D003684 ORTHO05D004428 6.2e-79 299.7 470 47.0
ATR1136G068 Amborella trichopoda HOM05D003684 ORTHO05D004428 9.0e-62 242.7 461 40.6
CBR_g645 Chara braunii HOM05D003684 ORTHO05D004428 7.6e-61 239.6 286 45.5
Cc07_g19750 Coffea canephora HOM05D003684 ORTHO05D004428 1.3e-57 228.8 185 64.3
MCO05G109 Micromonas commoda HOM05D003684 ORTHO05D004428 9.0e-54 216.1 316 40.8
HanXRQChr01g0009441 Helianthus annuus HOM05D003684 ORTHO05D004428 3.7e-47 194.1 112 84.8
Aqoxy391s001 Aquilegia oxysepala HOM05D003684 ORTHO05D004428 6.2e-47 193.4 101 92.1
Cre03.g182600 Chlamydomonas reinhardtii HOM05D003684 ORTHO05D004428 2.0e-45 188.3 239 43.5
TPR.G16635 Trifolium pratense HOM05D003684 ORTHO05D004428 2.7e-42 177.9 216 51.9
Ciclev10026566m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.3e-39 169.1 93 90.3
Cc00_g24540 Coffea canephora HOM05D003684 ORTHO05D004428 1.4e-38 165.6 85 88.2
MSTRG.2469 Avicennia marina HOM05D003684 ORTHO05D004428 5.8e-37 160.2 108 77.8
CSS0049380 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.0e-36 159.5 176 55.7
PRCOL_00004531 Prasinoderma coloniale HOM05D003684 ORTHO05D028742 1.0e-33 149.4 209 41.6
CDE02G3840 Ceratophyllum demersum HOM05D003684 ORTHO05D004428 1.1e-32 146.0 88 80.7
Mapoly0024s0027 Marchantia polymorpha HOM05D003684 ORTHO05D004428 3.7e-31 141.0 274 38.0
Sabra01G0044800 Salix brachista HOM05D003684 ORTHO05D004428 5.7e-24 117.1 65 84.6
Lsat_1_v5_gn_6_89680 Lactuca sativa HOM05D003684 ORTHO05D004428 9.7e-24 116.3 214 40.2
CSS0003103 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 1.4e-22 112.5 66 81.8
HanXRQChr17g0567611 Helianthus annuus HOM05D003684 ORTHO05D004428 3.1e-22 111.3 63 84.1
Ciclev10003222m.g Citrus clementina HOM05D003684 ORTHO05D004428 2.6e-21 108.2 127 52.0
SEGI_34739 Sequoiadendron giganteum HOM05D003684 ORTHO05D004428 2.7e-18 98.2 65 72.3
MBI01_g42406_MAGBIO Magnolia biondii HOM05D003684 ORTHO05D004428 6.7e-17 93.6 59 76.3
CSS0033146 Camellia sinensis var. sinensis HOM05D003684 ORTHO05D004428 2.8e-15 88.2 58 72.4
Cc07_g19740 Coffea canephora HOM05D003684 ORTHO05D004428 5.3e-14 84.0 52 75.0
Ca_09910_v3 Cicer arietinum L. HOM05D003095 ORTHO05D003517 1.1e-11 76.3 80 57.5
EL10Ac2g03383 Beta vulgaris HOM05D000039 ORTHO05D001729 2.5e-11 75.1 59 66.1
Potri.018G145552 Populus trichocarpa HOM05D003684 ORTHO05D004428 1.2e-10 72.8 39 92.3
arahy.Tifrunner.gnm1.ann1.32AA53 Arachis hypogaea HOM05D003684 ORTHO05D001254 2.1e-10 72.0 52 67.3
Ciclev10003442m.g Citrus clementina HOM05D003684 ORTHO05D004428 1.4e-09 69.3 47 72.3
EL10Ac9g22716 Beta vulgaris HOM05D003684 ORTHO05D004428 6.7e-09 67.0 32 87.5
Ciclev10003579m.g Citrus clementina HOM05D003684 ORTHO05D004428 6.3e-07 60.5 56 58.9


User provided reference genes

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