Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G247000 Prunus persica HOM05D002268 ORTHO05D006626 2.0e-74 282.3 144 100.0
Prupe.4G247300 Prunus persica HOM05D002268 ORTHO05D006626 1.0e-65 253.4 129 99.2
MD11G1197100 Malus domestica HOM05D002268 ORTHO05D006626 7.2e-64 247.3 129 96.9
MD03G1176500 Malus domestica HOM05D002268 ORTHO05D006626 4.7e-63 244.6 129 95.3
RcHm_v2.0_Chr3g0490621 Rosa chinensis HOM05D002268 ORTHO05D006626 1.7e-60 236.1 129 90.7
FAN23G0767 Fragaria x ananassa HOM05D002268 ORTHO05D006626 1.8e-59 232.6 129 89.1
FAN26G2056 Fragaria x ananassa HOM05D002268 ORTHO05D006626 1.8e-59 232.6 129 89.1
FvH4_1g30400 Fragaria vesca HOM05D002268 ORTHO05D006626 3.1e-59 231.9 129 88.4
FAN19G0796 Fragaria x ananassa HOM05D002268 ORTHO05D006626 3.1e-59 231.9 129 88.4
FAN28G1477 Fragaria x ananassa HOM05D002268 ORTHO05D006626 3.5e-58 228.4 129 87.6
QL11p018105 Quercus lobata HOM05D002268 ORTHO05D006626 2.9e-57 225.3 128 87.5
Haze_23129 Corylus avellana HOM05D002268 ORTHO05D006626 1.1e-56 223.4 129 85.3
Cfa009764 Carpinus fangiana HOM05D002268 ORTHO05D006626 1.5e-56 223.0 129 85.3
QL01p004799 Quercus lobata HOM05D002268 ORTHO05D006626 4.3e-56 221.5 128 85.9
Atru.chr3.2734 Acer truncatum HOM05D002268 ORTHO05D006626 1.6e-55 219.5 128 85.9
CiPaw.13G161600 Carya illinoinensis HOM05D002268 ORTHO05D006626 3.6e-55 218.4 129 82.9
Ciclev10014514m.g Citrus clementina HOM05D002268 ORTHO05D006626 6.1e-55 217.6 129 79.8
Dinv22183 Davidia involucrata HOM05D002268 ORTHO05D006626 6.1e-55 217.6 130 82.3
Gohir.A08G013840 Gossypium hirsutum HOM05D002268 ORTHO05D006626 6.1e-55 217.6 129 79.1
Gohir.D08G024300 Gossypium hirsutum HOM05D002268 ORTHO05D006626 6.1e-55 217.6 129 79.1
Gorai.004G019700 Gossypium raimondii HOM05D002268 ORTHO05D006626 6.1e-55 217.6 129 79.1
GSVIVG01025275001 Vitis vinifera HOM05D002268 ORTHO05D006626 8.0e-55 217.2 130 84.6
Cpa.g.sc84.63 Carica papaya HOM05D002268 ORTHO05D006626 1.0e-54 216.9 122 85.2
TWI60G0961 Tripterygium wilfordii HOM05D002268 ORTHO05D006626 1.0e-54 216.9 129 82.9
Thecc.09G232500 Theobroma cacao HOM05D002268 ORTHO05D006626 5.2e-54 214.5 129 79.8
Actinidia16328 Actinidia chinensis HOM05D002268 ORTHO05D006626 1.2e-53 213.4 130 79.2
Duzib170G0271 Durio zibethinus HOM05D002268 ORTHO05D006626 1.5e-53 213.0 129 79.8
Potri.009G054200 Populus trichocarpa HOM05D002268 ORTHO05D006626 7.5e-53 210.7 129 79.8
Manes.06G165100 Manihot esculenta HOM05D002268 ORTHO05D006626 1.3e-52 209.9 120 85.0
CSS0000345 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006626 1.7e-52 209.5 127 79.5
Sed0009485 Sechium edule HOM05D002268 ORTHO05D006626 1.1e-51 206.8 127 78.0
MELO3C014599.2 Cucumis melo HOM05D002268 ORTHO05D006626 2.4e-51 205.7 129 77.5
CsaV3_4G024210 Cucumis sativus L. HOM05D002268 ORTHO05D006626 2.4e-51 205.7 129 76.7
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 2.4e-51 205.7 124 79.8
ClCG02G023290 Citrullus lanatus HOM05D002268 ORTHO05D006626 5.4e-51 204.5 127 77.2
Glyma.12G057600 Glycine max HOM05D002268 ORTHO05D006626 7.0e-51 204.1 128 76.6
Lalb_Chr03g0026321 Lupinus albus HOM05D002268 ORTHO05D006626 1.2e-50 203.4 128 76.6
Phvul.011G059500 Phaseolus vulgaris HOM05D002268 ORTHO05D006626 1.2e-50 203.4 124 79.0
TPR.G35024 Trifolium pratense HOM05D002268 ORTHO05D006626 2.0e-50 202.6 128 76.6
DCAR_029948 Daucus carota HOM05D002268 ORTHO05D006626 4.6e-50 201.4 130 76.2
Lj3g0007359 Lotus japonicus HOM05D002268 ORTHO05D006626 1.0e-49 200.3 121 80.2
Ca_11285_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006626 1.3e-49 199.9 128 75.0
THA.LOC104799102 Tarenaya hassleriana HOM05D002268 ORTHO05D006626 1.3e-49 199.9 123 79.7
Lj1C332G7 Lonicera japonica HOM05D002268 ORTHO05D006626 1.7e-49 199.5 124 75.8
Medtr4g065030 Medicago truncatula HOM05D002268 ORTHO05D006626 1.7e-49 199.5 128 75.8
HanXRQChr07g0206341 Helianthus annuus HOM05D002268 ORTHO05D006626 2.3e-49 199.1 130 77.7
Nn7g36127 Nelumbo nucifera HOM05D002268 ORTHO05D006626 3.0e-49 198.7 130 78.5
Sabra09G0039500 Salix brachista HOM05D002268 ORTHO05D006626 3.0e-49 198.7 111 84.7
MSTRG.17589 Avicennia marina HOM05D002268 ORTHO05D006626 3.9e-49 198.4 130 76.9
ECA233G1364 Erigeron canadensis HOM05D002268 ORTHO05D006626 3.9e-49 198.4 130 77.7
Psat7g212800 Pisum sativum HOM05D002268 ORTHO05D006626 3.9e-49 198.4 124 77.4
ATR0605G248 Amborella trichopoda HOM05D002268 ORTHO05D006626 4.3e-48 194.9 119 79.0
CSS0030566 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006626 4.3e-48 194.9 108 84.3
PSO339G2962 Papaver somniferum HOM05D002268 ORTHO05D006626 1.2e-47 193.4 131 78.6
PSO384G3976 Papaver somniferum HOM05D002268 ORTHO05D006626 1.2e-47 193.4 131 78.6
CAN.G599.8 Capsicum annuum HOM05D002268 ORTHO05D006626 1.6e-47 193.0 130 71.5
Aqoxy1G00257 Aquilegia oxysepala HOM05D002268 ORTHO05D006626 2.8e-47 192.2 124 74.2
Lsat_1_v5_gn_6_47501 Lactuca sativa HOM05D002268 ORTHO05D006626 2.8e-47 192.2 130 74.6
Nitab4.5_0005819g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006626 3.6e-47 191.8 125 73.6
Sc06g0006620 Simmondsia chinensis HOM05D002268 ORTHO05D006626 6.2e-47 191.0 124 75.8
Ah.06g194290 Amaranthus hybridus HOM05D002268 ORTHO05D006626 8.0e-47 190.7 124 75.8
Aa31sc172G20 Aethionema arabicum HOM05D002268 ORTHO05D006626 1.4e-46 189.9 123 73.2
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 1.4e-46 189.9 107 84.1
EL10Ac4g10260 Beta vulgaris HOM05D002268 ORTHO05D006626 1.8e-46 189.5 123 75.6
EL10Ac4g10276 Beta vulgaris HOM05D002268 ORTHO05D006626 1.8e-46 189.5 123 75.6
Nitab4.5_0006994g0050 Nicotiana tabacum HOM05D002268 ORTHO05D006626 3.1e-46 188.7 125 72.8
SGA_v2.0_scaffold42G16106 Striga asiatica HOM05D002268 ORTHO05D006626 3.1e-46 188.7 115 78.3
AL3G23710 Arabidopsis lyrata HOM05D002268 ORTHO05D006626 5.2e-46 188.0 127 70.9
AT3G12080 Arabidopsis thaliana HOM05D002268 ORTHO05D006626 5.2e-46 188.0 127 70.9
BcaB06g25547 Brassica carinata HOM05D002268 ORTHO05D006626 5.2e-46 188.0 123 72.4
Thhalv10020226m.g Eutrema salsugineum HOM05D002268 ORTHO05D006626 8.9e-46 187.2 123 71.5
BcaB08g35090 Brassica carinata HOM05D002268 ORTHO05D006626 2.0e-45 186.0 123 71.5
BcaC05g29292 Brassica carinata HOM05D002268 ORTHO05D006626 2.0e-45 186.0 123 71.5
A05p37270 Brassica napus HOM05D002268 ORTHO05D006626 2.0e-45 186.0 123 71.5
C05p55740 Brassica napus HOM05D002268 ORTHO05D006626 2.0e-45 186.0 123 71.5
BraA05t22523Z Brassica rapa HOM05D002268 ORTHO05D006626 2.0e-45 186.0 123 71.5
BolC5t34241H Brassica oleracea HOM05D002268 ORTHO05D006626 2.6e-45 185.7 123 71.5
CARHR086640 Cardamine hirsuta HOM05D002268 ORTHO05D006626 2.6e-45 185.7 116 73.3
vmacro04210 Vaccinium macrocarpon HOM05D002268 ORTHO05D006626 2.6e-45 185.7 107 80.4
arahy.Tifrunner.gnm1.ann1.DNZ7SI Arachis hypogaea HOM05D002268 ORTHO05D006626 4.4e-45 184.9 109 80.7
arahy.Tifrunner.gnm1.ann1.I6T88V Arachis hypogaea HOM05D002268 ORTHO05D006626 4.4e-45 184.9 109 80.7
Rhsim13G0221900 Rhododendron simsii HOM05D002268 ORTHO05D006626 5.8e-45 184.5 110 80.0
Solyc11g065870.3 Solanum lycopersicum HOM05D002268 ORTHO05D006626 7.5e-45 184.1 113 76.1
Carub.0003s1142 Capsella rubella HOM05D002268 ORTHO05D006626 1.7e-44 183.0 111 75.7
HPP92_024482 Vanilla planifolia HOM05D002268 ORTHO05D006626 1.7e-44 183.0 108 81.5
Sp3g10310 Schrenkiella parvula HOM05D002268 ORTHO05D006626 2.2e-44 182.6 103 79.6
Sopen11g025600 Solanum pennellii HOM05D002268 ORTHO05D006626 2.2e-44 182.6 113 75.2
unitig_699.g19128 Utricularia gibba HOM05D002268 ORTHO05D006626 2.2e-44 182.6 133 69.9
Migut.N02312 Erythranthe guttata HOM05D002268 ORTHO05D006626 3.7e-44 181.8 130 68.5
Os11g0638000 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006626 3.7e-44 181.8 129 69.8
Cc07_g19630 Coffea canephora HOM05D002268 ORTHO05D006626 4.9e-44 181.4 129 71.3
Glyma.11G133367 Glycine max HOM05D002268 ORTHO05D006626 6.4e-44 181.0 108 79.6
Sc06g0006280 Simmondsia chinensis HOM05D002268 ORTHO05D006626 1.1e-43 180.3 105 81.0
Hund07516 Selenicereus undatus HOM05D002268 ORTHO05D006626 7.0e-43 177.6 116 74.1
arahy.Tifrunner.gnm1.ann1.HT7K3U Arachis hypogaea HOM05D002268 ORTHO05D006626 2.5e-40 169.1 107 78.5
SEGI_22266 Sequoiadendron giganteum HOM05D002268 ORTHO05D006626 1.2e-39 166.8 105 74.3
AUR62019293 Chenopodium quinoa HOM05D002268 ORTHO05D006626 1.6e-39 166.4 110 77.3
arahy.Tifrunner.gnm1.ann1.0B1337 Arachis hypogaea HOM05D002268 ORTHO05D006626 2.1e-39 166.0 108 75.9
Mapoly0022s0147 Marchantia polymorpha HOM05D002268 ORTHO05D006626 3.6e-39 165.2 115 68.7
AagrBONN_evm.TU.Sc2ySwM_344.2875 Anthoceros agrestis HOM05D002268 ORTHO05D006626 2.3e-38 162.5 105 67.6
Pp3c11_19380 Physcomitrium patens HOM05D002268 ORTHO05D006626 2.1e-34 149.4 106 62.3
CBR_g20109 Chara braunii HOM05D002268 ORTHO05D006626 1.1e-32 143.7 115 60.9
SMO271G0063 Selaginella moellendorffii HOM05D002268 ORTHO05D006626 1.9e-32 142.9 100 62.0
PRCOL_00000933 Prasinoderma coloniale HOM05D002268 ORTHO05D006626 3.6e-31 138.7 104 59.6
MCO02G480 Micromonas commoda HOM05D002268 ORTHO05D006626 1.6e-26 123.2 99 54.5
Cre16.g658450 Chlamydomonas reinhardtii HOM05D002268 ORTHO05D006626 1.5e-24 116.7 93 57.0
QL11p055566 Quercus lobata HOM05D002268 ORTHO05D006626 1.0e-17 94.0 52 84.6
QL01p024830 Quercus lobata HOM05D002268 ORTHO05D006626 1.7e-17 93.2 54 81.5
QL12p030809 Quercus lobata HOM05D002268 ORTHO05D006626 1.1e-16 90.5 52 80.8
arahy.Tifrunner.gnm1.ann1.YF2A1U Arachis hypogaea HOM05D002268 ORTHO05D006626 3.3e-16 89.0 57 77.2
arahy.Tifrunner.gnm1.ann1.S8SGVJ Arachis hypogaea HOM05D002268 ORTHO05D006626 3.6e-15 85.5 54 77.8
arahy.Tifrunner.gnm1.ann1.343DA6 Arachis hypogaea HOM05D002268 ORTHO05D006626 1.1e-14 84.0 51 78.4
arahy.Tifrunner.gnm1.ann1.UGJV9R Arachis hypogaea HOM05D002268 ORTHO05D006626 1.1e-14 84.0 51 78.4
arahy.Tifrunner.gnm1.ann1.Y5NGSN Arachis hypogaea HOM05D002268 ORTHO05D006626 1.1e-14 84.0 51 78.4
CDE10G0602 Ceratophyllum demersum HOM05D002268 ORTHO05D006626 1.8e-14 83.2 51 78.4
BcaB02g11023 Brassica carinata HOM05D002268 ORTHO05D006626 9.0e-14 80.9 59 64.4
arahy.Tifrunner.gnm1.ann1.TAE4IP Arachis hypogaea HOM05D002268 ORTHO05D006626 4.2e-11 72.0 42 78.6
Mapoly0007s0284 Marchantia polymorpha HOM05D002474 ORTHO05D007142 4.0e-06 55.5 87 34.5
Mapoly0252s0004 Marchantia polymorpha HOM05D002474 ORTHO05D007142 4.0e-06 55.5 87 34.5
Migut.B00704 Erythranthe guttata HOM05D002474 ORTHO05D007142 9.0e-06 54.3 102 32.4


User provided reference genes

Program Settings