Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G246800 Prunus persica HOM05D002268 ORTHO05D006626 5.2e-40 167.2 78 100.0
Prupe.4G247300 Prunus persica HOM05D002268 ORTHO05D006626 1.1e-26 122.9 62 91.9
MD03G1176500 Malus domestica HOM05D002268 ORTHO05D006626 2.5e-26 121.7 59 94.9
MD11G1197100 Malus domestica HOM05D002268 ORTHO05D006626 3.2e-26 121.3 62 88.7
GSVIVG01025275001 Vitis vinifera HOM05D002268 ORTHO05D006626 4.2e-26 120.9 62 90.3
CSS0030566 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006626 3.6e-25 117.9 62 85.5
RcHm_v2.0_Chr3g0490621 Rosa chinensis HOM05D002268 ORTHO05D006626 4.7e-25 117.5 62 83.9
Ciclev10014514m.g Citrus clementina HOM05D002268 ORTHO05D006626 6.1e-25 117.1 62 87.1
QL11p018105 Quercus lobata HOM05D002268 ORTHO05D006626 1.0e-24 116.3 62 85.5
Thecc.09G232500 Theobroma cacao HOM05D002268 ORTHO05D006626 1.0e-24 116.3 62 83.9
CSS0000345 Camellia sinensis var. sinensis HOM05D002268 ORTHO05D006626 1.8e-24 115.5 62 83.9
FvH4_1g30400 Fragaria vesca HOM05D002268 ORTHO05D006626 1.8e-24 115.5 62 80.6
FAN19G0796 Fragaria x ananassa HOM05D002268 ORTHO05D006626 1.8e-24 115.5 62 80.6
FAN23G0767 Fragaria x ananassa HOM05D002268 ORTHO05D006626 1.8e-24 115.5 62 80.6
FAN26G2056 Fragaria x ananassa HOM05D002268 ORTHO05D006626 1.8e-24 115.5 62 80.6
FAN28G1477 Fragaria x ananassa HOM05D002268 ORTHO05D006626 1.8e-24 115.5 62 80.6
arahy.Tifrunner.gnm1.ann1.DNZ7SI Arachis hypogaea HOM05D002268 ORTHO05D006626 2.3e-24 115.2 62 83.9
arahy.Tifrunner.gnm1.ann1.I6T88V Arachis hypogaea HOM05D002268 ORTHO05D006626 2.3e-24 115.2 62 83.9
arahy.Tifrunner.gnm1.ann1.S8SGVJ Arachis hypogaea HOM05D002268 ORTHO05D006626 2.3e-24 115.2 62 83.9
arahy.Tifrunner.gnm1.ann1.YF2A1U Arachis hypogaea HOM05D002268 ORTHO05D006626 2.3e-24 115.2 62 83.9
Lj3g0007359 Lotus japonicus HOM05D002268 ORTHO05D006626 2.3e-24 115.2 62 85.5
Manes.06G165100 Manihot esculenta HOM05D002268 ORTHO05D006626 2.3e-24 115.2 62 83.9
arahy.Tifrunner.gnm1.ann1.Y5NGSN Arachis hypogaea HOM05D002268 ORTHO05D006626 3.0e-24 114.8 62 82.3
CiPaw.13G161600 Carya illinoinensis HOM05D002268 ORTHO05D006626 3.0e-24 114.8 62 85.5
MELO3C014599.2 Cucumis melo HOM05D002268 ORTHO05D006626 3.0e-24 114.8 72 77.8
Atru.chr3.2734 Acer truncatum HOM05D002268 ORTHO05D006626 4.0e-24 114.4 62 83.9
Cc07_g19630 Coffea canephora HOM05D002268 ORTHO05D006626 4.0e-24 114.4 62 83.9
Dinv22183 Davidia involucrata HOM05D002268 ORTHO05D006626 4.0e-24 114.4 62 85.5
TWI60G0961 Tripterygium wilfordii HOM05D002268 ORTHO05D006626 4.0e-24 114.4 64 81.2
ClCG02G023290 Citrullus lanatus HOM05D002268 ORTHO05D006626 5.2e-24 114.0 62 85.5
Gohir.D08G024300 Gossypium hirsutum HOM05D002268 ORTHO05D006626 5.2e-24 114.0 62 82.3
Gorai.004G019700 Gossypium raimondii HOM05D002268 ORTHO05D006626 5.2e-24 114.0 62 82.3
Lj1C332G7 Lonicera japonica HOM05D002268 ORTHO05D006626 5.2e-24 114.0 62 83.9
Cpa.g.sc84.63 Carica papaya HOM05D002268 ORTHO05D006626 6.8e-24 113.6 62 82.3
arahy.Tifrunner.gnm1.ann1.343DA6 Arachis hypogaea HOM05D002268 ORTHO05D006626 8.8e-24 113.2 62 82.3
arahy.Tifrunner.gnm1.ann1.UGJV9R Arachis hypogaea HOM05D002268 ORTHO05D006626 8.8e-24 113.2 62 82.3
Duzib170G0271 Durio zibethinus HOM05D002268 ORTHO05D006626 8.8e-24 113.2 62 82.3
Sabra09G0039500 Salix brachista HOM05D002268 ORTHO05D006626 8.8e-24 113.2 62 83.9
CsaV3_4G024210 Cucumis sativus L. HOM05D002268 ORTHO05D006626 1.2e-23 112.8 62 83.9
Potri.009G054200 Populus trichocarpa HOM05D002268 ORTHO05D006626 1.2e-23 112.8 62 82.3
TPR.G35024 Trifolium pratense HOM05D002268 ORTHO05D006626 1.5e-23 112.5 62 80.6
Actinidia16328 Actinidia chinensis HOM05D002268 ORTHO05D006626 2.0e-23 112.1 62 82.3
Medtr4g065030 Medicago truncatula HOM05D002268 ORTHO05D006626 2.0e-23 112.1 62 79.0
Eucgr.J00770 Eucalyptus grandis HOM05D002268 ORTHO05D006626 2.6e-23 111.7 62 82.3
Gohir.A08G013840 Gossypium hirsutum HOM05D002268 ORTHO05D006626 3.4e-23 111.3 62 80.6
vmacro04210 Vaccinium macrocarpon HOM05D002268 ORTHO05D006626 3.4e-23 111.3 61 83.6
Glyma.12G057600 Glycine max HOM05D002268 ORTHO05D006626 4.4e-23 110.9 62 80.6
PSO339G2962 Papaver somniferum HOM05D002268 ORTHO05D006626 4.4e-23 110.9 62 79.0
PSO384G3976 Papaver somniferum HOM05D002268 ORTHO05D006626 4.4e-23 110.9 62 79.0
MSTRG.17589 Avicennia marina HOM05D002268 ORTHO05D006626 5.7e-23 110.5 62 80.6
DCAR_029948 Daucus carota HOM05D002268 ORTHO05D006626 5.7e-23 110.5 62 79.0
ATR0605G248 Amborella trichopoda HOM05D002268 ORTHO05D006626 7.5e-23 110.2 62 79.0
unitig_699.g19128 Utricularia gibba HOM05D002268 ORTHO05D006626 7.5e-23 110.2 62 77.4
Lalb_Chr03g0026321 Lupinus albus HOM05D002268 ORTHO05D006626 9.8e-23 109.8 62 80.6
Ca_11285_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006626 1.7e-22 109.0 62 75.8
Ca_30226_v3 Cicer arietinum L. HOM05D002268 ORTHO05D006626 1.7e-22 109.0 62 75.8
Aqoxy1G00257 Aquilegia oxysepala HOM05D002268 ORTHO05D006626 2.8e-22 108.2 62 74.2
Nn7g36127 Nelumbo nucifera HOM05D002268 ORTHO05D006626 2.8e-22 108.2 62 77.4
Rhsim13G0221900 Rhododendron simsii HOM05D002268 ORTHO05D006626 3.7e-22 107.8 61 82.0
Cfa009764 Carpinus fangiana HOM05D002268 ORTHO05D006626 4.9e-22 107.5 62 77.4
Haze_23129 Corylus avellana HOM05D002268 ORTHO05D006626 4.9e-22 107.5 62 77.4
Glyma.11G133367 Glycine max HOM05D002268 ORTHO05D006626 4.9e-22 107.5 62 77.4
Sed0009485 Sechium edule HOM05D002268 ORTHO05D006626 4.9e-22 107.5 62 80.6
CAN.G599.8 Capsicum annuum HOM05D002268 ORTHO05D006626 6.3e-22 107.1 59 81.4
HanXRQChr07g0206341 Helianthus annuus HOM05D002268 ORTHO05D006626 6.3e-22 107.1 62 77.4
Aa31sc172G20 Aethionema arabicum HOM05D002268 ORTHO05D006626 1.1e-21 106.3 61 78.7
CARHR086640 Cardamine hirsuta HOM05D002268 ORTHO05D006626 1.1e-21 106.3 61 78.7
Migut.N02312 Erythranthe guttata HOM05D002268 ORTHO05D006626 1.1e-21 106.3 62 75.8
Lsat_1_v5_gn_6_47501 Lactuca sativa HOM05D002268 ORTHO05D006626 1.1e-21 106.3 62 75.8
Phvul.011G059500 Phaseolus vulgaris HOM05D002268 ORTHO05D006626 1.4e-21 105.9 62 77.4
VMungo1127G0743 Vigna mungo HOM05D002268 ORTHO05D006937 1.4e-21 105.9 62 77.4
AL3G23710 Arabidopsis lyrata HOM05D002268 ORTHO05D006626 1.8e-21 105.5 61 78.7
AT3G12080 Arabidopsis thaliana HOM05D002268 ORTHO05D006626 1.8e-21 105.5 61 78.7
BcaB06g25547 Brassica carinata HOM05D002268 ORTHO05D006626 1.8e-21 105.5 61 78.7
BcaB08g35090 Brassica carinata HOM05D002268 ORTHO05D006626 1.8e-21 105.5 61 78.7
BcaC05g29292 Brassica carinata HOM05D002268 ORTHO05D006626 1.8e-21 105.5 61 78.7
A05p37270 Brassica napus HOM05D002268 ORTHO05D006626 1.8e-21 105.5 61 78.7
C05p55740 Brassica napus HOM05D002268 ORTHO05D006626 1.8e-21 105.5 61 78.7
BolC5t34241H Brassica oleracea HOM05D002268 ORTHO05D006626 1.8e-21 105.5 61 78.7
BraA05t22523Z Brassica rapa HOM05D002268 ORTHO05D006626 1.8e-21 105.5 61 78.7
ECA233G1364 Erigeron canadensis HOM05D002268 ORTHO05D006626 1.8e-21 105.5 62 75.8
Thhalv10020226m.g Eutrema salsugineum HOM05D002268 ORTHO05D006626 1.8e-21 105.5 61 78.7
Sp3g10310 Schrenkiella parvula HOM05D002268 ORTHO05D006626 1.8e-21 105.5 61 78.7
Carub.0003s1142 Capsella rubella HOM05D002268 ORTHO05D006626 2.4e-21 105.1 61 77.0
Solyc11g065870.3 Solanum lycopersicum HOM05D002268 ORTHO05D006626 2.4e-21 105.1 62 75.8
Sopen11g025600 Solanum pennellii HOM05D002268 ORTHO05D006626 2.4e-21 105.1 62 75.8
Psat7g212800 Pisum sativum HOM05D002268 ORTHO05D006626 3.1e-21 104.8 62 72.6
Hund07516 Selenicereus undatus HOM05D002268 ORTHO05D006626 3.1e-21 104.8 62 75.8
THA.LOC104799102 Tarenaya hassleriana HOM05D002268 ORTHO05D006626 3.1e-21 104.8 61 73.8
Nitab4.5_0005819g0060 Nicotiana tabacum HOM05D002268 ORTHO05D006626 4.1e-21 104.4 62 74.2
Nitab4.5_0006994g0050 Nicotiana tabacum HOM05D002268 ORTHO05D006626 4.1e-21 104.4 62 74.2
Ah.06g194290 Amaranthus hybridus HOM05D002268 ORTHO05D006626 5.4e-21 104.0 62 75.8
AUR62000114 Chenopodium quinoa HOM05D002268 ORTHO05D006937 5.4e-21 104.0 62 75.8
AUR62019293 Chenopodium quinoa HOM05D002268 ORTHO05D006626 5.4e-21 104.0 62 75.8
Sc06g0006280 Simmondsia chinensis HOM05D002268 ORTHO05D006626 5.4e-21 104.0 62 79.0
Sc06g0006620 Simmondsia chinensis HOM05D002268 ORTHO05D006626 5.4e-21 104.0 62 79.0
HPP92_024482 Vanilla planifolia HOM05D002268 ORTHO05D006626 5.4e-21 104.0 62 72.6
CDE10G0602 Ceratophyllum demersum HOM05D002268 ORTHO05D006626 7.0e-21 103.6 62 77.4
EL10Ac4g10260 Beta vulgaris HOM05D002268 ORTHO05D006626 2.7e-20 101.7 62 74.2
EL10Ac4g10276 Beta vulgaris HOM05D002268 ORTHO05D006626 2.7e-20 101.7 62 74.2
SGA_v2.0_scaffold42G16106 Striga asiatica HOM05D002268 ORTHO05D006626 3.5e-20 101.3 62 71.0
Os11g0638000 Oryza sativa ssp. japonica HOM05D002268 ORTHO05D006626 5.9e-20 100.5 62 71.0
AagrBONN_evm.TU.Sc2ySwM_344.2875 Anthoceros agrestis HOM05D002268 ORTHO05D006626 5.5e-18 94.0 59 67.8
QL01p004799 Quercus lobata HOM05D002268 ORTHO05D006626 1.6e-17 92.4 62 72.6
SEGI_22266 Sequoiadendron giganteum HOM05D002268 ORTHO05D006626 6.1e-17 90.5 59 66.1
QL12p030809 Quercus lobata HOM05D002268 ORTHO05D006626 1.8e-16 89.0 49 81.6
QL01p024830 Quercus lobata HOM05D002268 ORTHO05D006626 2.3e-16 88.6 49 81.6
SMO271G0063 Selaginella moellendorffii HOM05D002268 ORTHO05D006626 3.0e-16 88.2 59 62.7
Pp3c11_19380 Physcomitrium patens HOM05D002268 ORTHO05D006626 1.7e-14 82.4 59 59.3
Mapoly0022s0147 Marchantia polymorpha HOM05D002268 ORTHO05D006626 3.7e-14 81.3 59 55.9
CBR_g20109 Chara braunii HOM05D002268 ORTHO05D006626 1.3e-11 72.8 59 52.5
Zm00001eb115290 Zea mays HOM05D002268 ORTHO05D006626 1.4e-08 62.8 36 69.4
PRCOL_00000933 Prasinoderma coloniale HOM05D002268 ORTHO05D006626 1.5e-07 59.3 51 47.1
BcaNung06701 Brassica carinata HOM05D002268 ORTHO05D006626 4.4e-07 57.8 37 73.0


User provided reference genes

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