Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G246000 Prunus persica HOM05D004494 ORTHO05D005493 1.2e-24 115.5 52 100.0
Prupe.5G244400 Prunus persica HOM05D004494 ORTHO05D005493 1.2e-24 115.5 52 100.0
FvH4_5g18480 Fragaria vesca HOM05D004494 ORTHO05D005493 3.8e-23 110.5 54 96.3
RcHm_v2.0_Chr7g0177031 Rosa chinensis HOM05D004494 ORTHO05D005493 3.2e-22 107.5 54 94.4
CiPaw.16G074500 Carya illinoinensis HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 92.3
Ciclev10017429m.g Citrus clementina HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 92.3
Glyma.09G164200 Glycine max HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 92.3
Glyma.16G212700 Glycine max HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 92.3
Lj2g0023891 Lotus japonicus HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 92.3
Lalb_Chr08g0237121 Lupinus albus HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 92.3
Manes.10G081901 Manihot esculenta HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 92.3
Phvul.004G138700 Phaseolus vulgaris HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 92.3
Potri.011G144800 Populus trichocarpa HOM05D004494 ORTHO05D005493 3.6e-21 104.0 52 92.3
Sed0027035 Sechium edule HOM05D004494 ORTHO05D005493 4.7e-21 103.6 52 90.4
PSO673G0024 Papaver somniferum HOM05D004494 ORTHO05D005493 8.0e-21 102.8 52 90.4
Sed0010347 Sechium edule HOM05D004494 ORTHO05D005493 8.0e-21 102.8 52 90.4
EL10Ac5g11725 Beta vulgaris HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 90.4
CSS0001708 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 90.4
CSS0021691 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 90.4
CSS0025595 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 90.4
CSS0034931 Camellia sinensis var. sinensis HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 90.4
Hma1.2p1_0854F.1_g228840 Hydrangea macrophylla HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 90.4
vmacro09451 Vaccinium macrocarpon HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 90.4
GSVIVG01035228001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.4e-20 102.1 52 90.4
MELO3C002173.2 Cucumis melo HOM05D004494 ORTHO05D005493 3.0e-20 100.9 52 90.4
MELO3C008157.2 Cucumis melo HOM05D004494 ORTHO05D005493 3.0e-20 100.9 52 90.4
CsaV3_1G007550 Cucumis sativus L. HOM05D004494 ORTHO05D005493 3.0e-20 100.9 52 90.4
PGR083G0484 Punica granatum HOM05D004494 ORTHO05D005493 3.0e-20 100.9 52 86.5
MD12G1077100 Malus domestica HOM05D004494 ORTHO05D005493 8.8e-20 99.4 50 90.0
MD14G1071000 Malus domestica HOM05D004494 ORTHO05D005493 8.8e-20 99.4 50 90.0
Migut.H02056 Erythranthe guttata HOM05D004494 ORTHO05D005493 1.2e-19 99.0 52 88.5
THA.LOC104822608 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 1.2e-19 99.0 52 88.5
arahy.Tifrunner.gnm1.ann1.UPEY1W Arachis hypogaea HOM05D004494 ORTHO05D005493 1.5e-19 98.6 52 88.5
Duzib192G0124 Durio zibethinus HOM05D004494 ORTHO05D005493 1.5e-19 98.6 52 88.5
Duzib235G0349 Durio zibethinus HOM05D004494 ORTHO05D005493 1.5e-19 98.6 52 88.5
FAN08G0913 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.5e-19 98.6 47 95.7
FAN18G1159 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.5e-19 98.6 47 95.7
Gohir.A06G195100 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.5e-19 98.6 52 88.5
Gohir.D06G202700 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.5e-19 98.6 52 88.5
Gohir.D11G001400 Gossypium hirsutum HOM05D004494 ORTHO05D005493 1.5e-19 98.6 52 88.5
Gorai.007G002300 Gossypium raimondii HOM05D004494 ORTHO05D005493 1.5e-19 98.6 52 88.5
Gorai.010G236600 Gossypium raimondii HOM05D004494 ORTHO05D005493 1.5e-19 98.6 52 88.5
Thecc.06G057100 Theobroma cacao HOM05D004494 ORTHO05D005493 1.5e-19 98.6 52 88.5
TPR.G34872 Trifolium pratense HOM05D004494 ORTHO05D005493 1.5e-19 98.6 51 86.3
Thhalv10011934m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 2.0e-19 98.2 52 84.6
Aqoxy5G00339 Aquilegia oxysepala HOM05D004494 ORTHO05D005493 2.6e-19 97.8 52 88.5
THA.LOC104810404 Tarenaya hassleriana HOM05D004494 ORTHO05D005493 2.6e-19 97.8 52 88.5
CANSAT11G2181 Cannabis sativa HOM05D004494 ORTHO05D005493 3.3e-19 97.4 50 90.0
CiPaw.06G022300 Carya illinoinensis HOM05D004494 ORTHO05D005493 5.7e-19 96.7 52 88.5
Gohir.A11G001800 Gossypium hirsutum HOM05D004494 ORTHO05D005493 7.5e-19 96.3 52 84.6
HanXRQChr09g0257491 Helianthus annuus HOM05D004494 ORTHO05D005493 7.5e-19 96.3 52 86.5
HanXRQChr15g0468731 Helianthus annuus HOM05D004494 ORTHO05D005493 7.5e-19 96.3 52 86.5
Os01g0530366 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 7.5e-19 96.3 53 86.8
PSO782G1294 Papaver somniferum HOM05D004494 ORTHO05D005493 7.5e-19 96.3 52 84.6
AT5G41010 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 9.7e-19 95.9 52 82.7
Thhalv10028022m.g Eutrema salsugineum HOM05D004494 ORTHO05D005493 1.3e-18 95.5 52 82.7
Psat3g135240 Pisum sativum HOM05D004494 ORTHO05D005493 1.3e-18 95.5 52 82.7
TWI36G0745 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 1.3e-18 95.5 52 86.5
AL7G48542 Arabidopsis lyrata HOM05D004494 ORTHO05D005493 1.7e-18 95.1 53 83.0
BcaB04g17064 Brassica carinata HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 82.7
BcaB07g33308 Brassica carinata HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 82.7
BcaC01g01406 Brassica carinata HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 82.7
BcaC08g43550 Brassica carinata HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 82.7
A06p00840 Brassica napus HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 82.7
C06p09480 Brassica napus HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 82.7
BraA08t32198Z Brassica rapa HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 82.7
BraSC277t45950Z Brassica rapa HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 82.7
Ca_07598_v3 Cicer arietinum L. HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 80.8
PSO421G0336 Papaver somniferum HOM05D004494 ORTHO05D005493 1.7e-18 95.1 53 86.8
PSO421G0392 Papaver somniferum HOM05D004494 ORTHO05D005493 1.7e-18 95.1 53 86.8
Sp1g40220 Schrenkiella parvula HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 82.7
Sp7g00900 Schrenkiella parvula HOM05D004494 ORTHO05D005493 1.7e-18 95.1 52 82.7
CARHR043990 Cardamine hirsuta HOM05D004494 ORTHO05D005493 2.2e-18 94.7 52 82.7
CARHR213360 Cardamine hirsuta HOM05D004494 ORTHO05D005493 2.2e-18 94.7 52 82.7
MD14G1070900 Malus domestica HOM05D004494 ORTHO05D005493 2.2e-18 94.7 52 76.9
Medtr7g066240 Medicago truncatula HOM05D004494 ORTHO05D005493 2.2e-18 94.7 52 82.7
Carub.0007s3448 Capsella rubella HOM05D004494 ORTHO05D005493 2.8e-18 94.4 50 84.0
CAN.G904.11 Capsicum annuum HOM05D004494 ORTHO05D005493 2.8e-18 94.4 53 86.8
Solyc10g007650.3 Solanum lycopersicum HOM05D004494 ORTHO05D005493 2.8e-18 94.4 53 86.8
GSVIVG01012569001 Vitis vinifera HOM05D004494 ORTHO05D005493 4.8e-18 93.6 47 89.4
TWI81G0978 Tripterygium wilfordii HOM05D004494 ORTHO05D005493 6.3e-18 93.2 52 84.6
arahy.Tifrunner.gnm1.ann1.DLM5V3 Arachis hypogaea HOM05D004494 ORTHO05D005493 8.2e-18 92.8 51 82.4
Lj2g0005437 Lotus japonicus HOM05D004494 ORTHO05D005493 1.1e-17 92.4 46 89.1
GSVIVG01012562001 Vitis vinifera HOM05D004494 ORTHO05D005493 1.4e-17 92.0 52 84.6
PSO063G6745 Papaver somniferum HOM05D004494 ORTHO05D005493 1.8e-17 91.7 47 89.4
Pp3c24_13920 Physcomitrium patens HOM05D004494 ORTHO05D005493 1.8e-17 91.7 50 82.0
Nn4g25134 Nelumbo nucifera HOM05D004494 ORTHO05D005493 4.1e-17 90.5 44 90.9
Ah.06g192750 Amaranthus hybridus HOM05D006004 ORTHO05D006976 9.1e-17 89.4 46 87.0
Mapoly0066s0049 Marchantia polymorpha HOM05D004494 ORTHO05D005493 9.1e-17 89.4 48 83.3
Cpa.g.sc25.208 Carica papaya HOM05D004494 ORTHO05D005493 1.2e-16 89.0 44 88.6
SalBow1G8446 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.2e-16 89.0 46 84.8
SalBow3G4220 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.2e-16 89.0 46 84.8
SalBow6G4049 Salvia bowleyana HOM05D004494 ORTHO05D005493 1.2e-16 89.0 46 84.8
SMO145G0179 Selaginella moellendorffii HOM05D004494 ORTHO05D005493 1.2e-16 89.0 50 82.0
AUR62038701 Chenopodium quinoa HOM05D004494 ORTHO05D005493 1.6e-16 88.6 44 88.6
Oeu012705.2 Olea europaea HOM05D004494 ORTHO05D005493 1.6e-16 88.6 44 88.6
Oeu058437.1 Olea europaea HOM05D004494 ORTHO05D005493 1.6e-16 88.6 44 88.6
Hund02298 Selenicereus undatus HOM05D004494 ORTHO05D005493 1.6e-16 88.6 44 88.6
Hund10311 Selenicereus undatus HOM05D004494 ORTHO05D005493 1.6e-16 88.6 44 88.6
arahy.Tifrunner.gnm1.ann1.IHMM71 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.7e-16 87.8 53 77.4
arahy.Tifrunner.gnm1.ann1.QX7YV8 Arachis hypogaea HOM05D004494 ORTHO05D005493 2.7e-16 87.8 53 77.4
ClCG01G014780 Citrullus lanatus HOM05D004494 ORTHO05D005493 3.5e-16 87.4 44 88.6
Haze_25494 Corylus avellana HOM05D004494 ORTHO05D005493 4.5e-16 87.0 44 86.4
Oeu059243.2 Olea europaea HOM05D004494 ORTHO05D005493 4.5e-16 87.0 46 82.6
Lsat_1_v5_gn_9_103341 Lactuca sativa HOM05D000133 ORTHO05D005913 5.9e-16 86.7 45 86.7
COL.COLO4_31155 Corchorus olitorius HOM05D004494 ORTHO05D005493 7.7e-16 86.3 46 84.8
QL10p045758 Quercus lobata HOM05D004494 ORTHO05D005493 7.7e-16 86.3 48 81.2
arahy.Tifrunner.gnm1.ann1.I96U63 Arachis hypogaea HOM05D004494 ORTHO05D005493 1.0e-15 85.9 45 86.7
BolC3t21490H Brassica oleracea HOM05D004494 ORTHO05D005493 1.0e-15 85.9 50 74.0
DCAR_021072 Daucus carota HOM05D004494 ORTHO05D005493 1.3e-15 85.5 44 86.4
Migut.M00671 Erythranthe guttata HOM05D004494 ORTHO05D005493 1.3e-15 85.5 44 86.4
QL10p046170 Quercus lobata HOM05D004494 ORTHO05D005493 1.7e-15 85.1 44 86.4
SEGI_39556 Sequoiadendron giganteum HOM05D004494 ORTHO05D005493 1.7e-15 85.1 48 85.4
Aa31LG10G1570 Aethionema arabicum HOM05D004494 ORTHO05D005493 2.9e-15 84.3 44 81.8
arahy.Tifrunner.gnm1.ann1.93HXT6 Arachis hypogaea HOM05D004494 ORTHO05D005493 3.8e-15 84.0 44 84.1
arahy.Tifrunner.gnm1.ann1.WE4FU2 Arachis hypogaea HOM05D004494 ORTHO05D005493 6.5e-15 83.2 53 73.6
Mapoly0119s0017 Marchantia polymorpha HOM05D004494 ORTHO05D005493 6.5e-15 83.2 50 76.0
MBI06_g27491_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 8.5e-15 82.8 44 84.1
Nitab4.5_0002209g0130 Nicotiana tabacum HOM05D004494 ORTHO05D005493 1.1e-14 82.4 46 84.8
PGSC0003DMG400021289 Solanum tuberosum HOM05D004494 ORTHO05D005493 1.1e-14 82.4 49 77.6
A05p17960 Brassica napus HOM05D004494 ORTHO05D005493 1.5e-14 82.0 44 81.8
A08p01450 Brassica napus HOM05D004494 ORTHO05D005493 1.5e-14 82.0 44 81.8
C03p91710 Brassica napus HOM05D004494 ORTHO05D005493 1.5e-14 82.0 44 81.8
BraA05t20689Z Brassica rapa HOM05D004494 ORTHO05D005493 1.5e-14 82.0 44 81.8
QL09p054324 Quercus lobata HOM05D004494 ORTHO05D005493 1.9e-14 81.6 44 84.1
GSVIVG01012570001 Vitis vinifera HOM05D004494 ORTHO05D005493 2.5e-14 81.3 40 87.5
Cre07.g342352 Chlamydomonas reinhardtii HOM05D004494 ORTHO05D005493 3.2e-14 80.9 45 77.8
Nitab4.5_0000923g0150 Nicotiana tabacum HOM05D004494 ORTHO05D005493 3.2e-14 80.9 45 84.4
Os07g0105100 Oryza sativa ssp. japonica HOM05D004494 ORTHO05D005493 4.2e-14 80.5 53 71.7
Aa31LG1G19660 Aethionema arabicum HOM05D004494 ORTHO05D005493 5.5e-14 80.1 52 63.5
Aa31LG8G1870 Aethionema arabicum HOM05D004494 ORTHO05D005493 5.5e-14 80.1 52 63.5
BcaC05g27278 Brassica carinata HOM05D004494 ORTHO05D005493 5.5e-14 80.1 45 77.8
arahy.Tifrunner.gnm1.ann1.YVY1FB Arachis hypogaea HOM05D004494 ORTHO05D005493 1.6e-13 78.6 43 81.4
Prupe.4G215400 Prunus persica HOM05D004494 ORTHO05D005493 1.6e-13 78.6 54 66.7
BolC8t52568H Brassica oleracea HOM05D004494 ORTHO05D005493 2.7e-13 77.8 42 81.0
PRCOL_00006868 Prasinoderma coloniale HOM05D004494 ORTHO05D005493 2.7e-13 77.8 43 81.4
C06p15220 Brassica napus HOM05D004494 ORTHO05D005493 4.7e-13 77.0 67 61.2
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 6.1e-13 76.6 43 79.1
BolC6t36697H Brassica oleracea HOM05D004494 ORTHO05D005493 4.0e-12 73.9 44 77.3
MBI16_g26393_MAGBIO Magnolia biondii HOM05D004494 ORTHO05D005493 6.8e-12 73.2 42 76.2
Aa31LG1G19360 Aethionema arabicum HOM05D004494 ORTHO05D005493 9.8e-11 69.3 48 58.3
Aa31LG1G19670 Aethionema arabicum HOM05D000171 ORTHO05D000101 2.2e-10 68.2 39 71.8
FvH4_3g22950 Fragaria vesca HOM05D004494 ORTHO05D005493 2.2e-10 68.2 57 50.9
FAN21G1244 Fragaria x ananassa HOM05D004494 ORTHO05D005493 2.2e-10 68.2 57 50.9
Haze_27787 Corylus avellana HOM05D004494 ORTHO05D005493 2.8e-10 67.8 58 51.7
BcaC08g44099 Brassica carinata HOM05D004494 ORTHO05D005493 3.7e-10 67.4 84 46.4
Peaxi162Scf00111g00531 Petunia axillaris HOM05D004494 ORTHO05D005493 3.7e-10 67.4 66 54.5
RcHm_v2.0_Chr5g0040221 Rosa chinensis HOM05D004494 ORTHO05D005493 3.7e-10 67.4 57 50.9
FAN16G2751 Fragaria x ananassa HOM05D004494 ORTHO05D005493 6.3e-10 66.6 49 55.1
unitig_26.g9512 Utricularia gibba HOM05D004494 ORTHO05D005493 6.3e-10 66.6 83 48.2
arahy.Tifrunner.gnm1.ann1.S5KS5D Arachis hypogaea HOM05D004494 ORTHO05D005493 1.4e-09 65.5 36 77.8
Rhsim04G0032100 Rhododendron simsii HOM05D004494 ORTHO05D005493 1.8e-09 65.1 35 80.0
AT1G53690 Arabidopsis thaliana HOM05D004494 ORTHO05D005493 2.0e-08 61.6 41 68.3
Carub.0001s4296 Capsella rubella HOM05D004494 ORTHO05D005493 1.7e-07 58.5 42 61.9
FAN11G3063 Fragaria x ananassa HOM05D004494 ORTHO05D005493 1.7e-07 58.5 49 49.0
C08p50400 Brassica napus HOM05D004494 ORTHO05D005493 3.8e-07 57.4 32 75.0
arahy.Tifrunner.gnm1.ann1.SVJ78B Arachis hypogaea HOM05D004494 ORTHO05D083263 3.2e-06 54.3 29 79.3
C05p31860 Brassica napus HOM05D004494 ORTHO05D005493 4.2e-06 53.9 31 77.4
BolC5t31914H Brassica oleracea HOM05D004494 ORTHO05D005493 4.2e-06 53.9 31 77.4
arahy.Tifrunner.gnm1.ann1.H77AQF Arachis hypogaea HOM05D004494 ORTHO05D005493 9.5e-06 52.8 25 92.0


User provided reference genes

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