Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G213500 Prunus persica HOM05D003917 ORTHO05D005104 5.9e-98 360.9 188 100.0
MD11G1217800 Malus domestica HOM05D003917 ORTHO05D005104 1.4e-91 339.7 188 92.6
MD03G1200800 Malus domestica HOM05D003917 ORTHO05D005104 4.5e-90 334.7 188 90.4
FvH4_3g22680 Fragaria vesca HOM05D003917 ORTHO05D005104 9.7e-85 317.0 188 88.3
FAN21G1759 Fragaria x ananassa HOM05D003917 ORTHO05D005104 9.7e-85 317.0 188 88.3
FAN25G1034 Fragaria x ananassa HOM05D003917 ORTHO05D005104 9.7e-85 317.0 188 88.3
MD11G1218500 Malus domestica HOM05D003917 ORTHO05D005104 2.2e-81 305.8 188 83.0
CiPaw.12G129800 Carya illinoinensis HOM05D003917 ORTHO05D005104 2.9e-81 305.4 188 83.0
RcHm_v2.0_Chr5g0039491 Rosa chinensis HOM05D003917 ORTHO05D005104 6.5e-81 304.3 189 87.3
Cfa020343 Carpinus fangiana HOM05D003917 ORTHO05D005104 3.2e-80 302.0 192 81.2
CSS0021043 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 9.4e-80 300.4 189 84.7
RhsimUnG0250500 Rhododendron simsii HOM05D003917 ORTHO05D005104 6.7e-78 294.3 190 83.2
TAR626G1684 Trochodendron aralioides HOM05D003917 ORTHO05D005104 1.2e-77 293.5 188 81.4
QL08p010140 Quercus lobata HOM05D003917 ORTHO05D005104 1.5e-77 293.1 187 79.7
Ah.06g186000 Amaranthus hybridus HOM05D003917 ORTHO05D005104 3.3e-77 292.0 188 79.3
ClCG10G005360 Citrullus lanatus HOM05D003917 ORTHO05D005104 9.7e-77 290.4 188 78.2
Sc16g0006040 Simmondsia chinensis HOM05D003917 ORTHO05D005104 2.2e-76 289.3 188 79.8
GSVIVG01037650001 Vitis vinifera HOM05D003917 ORTHO05D005104 2.2e-76 289.3 189 81.0
EL10Ac4g07805 Beta vulgaris HOM05D003917 ORTHO05D005104 4.8e-76 288.1 188 80.9
vmacro09714 Vaccinium macrocarpon HOM05D003917 ORTHO05D005104 6.3e-76 287.7 192 79.7
CsaV3_3G005080 Cucumis sativus L. HOM05D003917 ORTHO05D005104 8.2e-76 287.3 188 77.7
Duzib213G0954 Durio zibethinus HOM05D003917 ORTHO05D005104 5.3e-75 284.6 187 79.1
Thecc.07G036800 Theobroma cacao HOM05D003917 ORTHO05D005104 1.2e-74 283.5 187 80.2
AUR62020441 Chenopodium quinoa HOM05D003917 ORTHO05D005104 2.0e-74 282.7 189 77.8
Hund01991 Selenicereus undatus HOM05D003917 ORTHO05D005104 2.7e-74 282.3 188 77.7
AUR62015777 Chenopodium quinoa HOM05D003917 ORTHO05D005104 3.5e-74 282.0 188 78.2
Ca_01713_v3 Cicer arietinum L. HOM05D003917 ORTHO05D005104 7.7e-74 280.8 187 77.0
Gohir.D13G142900 Gossypium hirsutum HOM05D003917 ORTHO05D005104 1.3e-73 280.0 187 79.7
Hma1.2p1_0673F.1_g201365 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.7e-73 279.6 192 78.1
Hma1.2p1_0673F.1_g201370 Hydrangea macrophylla HOM05D003917 ORTHO05D005104 1.7e-73 279.6 192 78.1
ECA240G3908 Erigeron canadensis HOM05D003917 ORTHO05D005104 2.2e-73 279.3 194 76.8
Glyma.18G096900 Glycine max HOM05D003917 ORTHO05D005104 5.0e-73 278.1 189 77.8
Gohir.A13G138100 Gossypium hirsutum HOM05D003917 ORTHO05D005104 5.0e-73 278.1 187 79.1
Migut.H01827 Erythranthe guttata HOM05D003917 ORTHO05D005104 8.5e-73 277.3 190 79.5
PGR083G1099 Punica granatum HOM05D003917 ORTHO05D005104 8.5e-73 277.3 189 77.2
CSS0032620 Camellia sinensis var. sinensis HOM05D003917 ORTHO05D005104 1.1e-72 276.9 189 76.2
Gorai.013G159800 Gossypium raimondii HOM05D003917 ORTHO05D005104 2.5e-72 275.8 194 77.3
COL.COLO4_09663 Corchorus olitorius HOM05D003917 ORTHO05D005104 4.2e-72 275.0 187 78.6
Eucgr.L03176 Eucalyptus grandis HOM05D003917 ORTHO05D005104 4.2e-72 275.0 190 75.8
Eucgr.F00763 Eucalyptus grandis HOM05D003917 ORTHO05D005104 7.2e-72 274.2 190 75.8
DCAR_016705 Daucus carota HOM05D003917 ORTHO05D005104 1.2e-71 273.5 192 76.6
Atru.chr2.3409 Acer truncatum HOM05D003917 ORTHO05D005104 6.1e-71 271.2 189 75.1
Phvul.006G043400 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 8.0e-71 270.8 187 75.9
Dinv22262 Davidia involucrata HOM05D006187 ORTHO05D007621 1.4e-70 270.0 172 82.0
SGA_v2.0_scaffold8G04319 Striga asiatica HOM05D003917 ORTHO05D005104 1.4e-70 270.0 190 77.4
arahy.Tifrunner.gnm1.ann1.ZCST78 Arachis hypogaea HOM05D003917 ORTHO05D005104 1.8e-70 269.6 189 75.1
Cc05_g13680 Coffea canephora HOM05D003917 ORTHO05D005104 1.8e-70 269.6 190 77.4
CANSAT01G2526 Cannabis sativa HOM05D003917 ORTHO05D005104 2.3e-70 269.2 191 75.9
Lj6g0025956 Lotus japonicus HOM05D003917 ORTHO05D005104 3.0e-70 268.9 186 76.9
Medtr3g051740 Medicago truncatula HOM05D003917 ORTHO05D005104 3.0e-70 268.9 188 75.0
VMungo0647G2080 Vigna mungo HOM05D003917 ORTHO05D005104 3.0e-70 268.9 187 72.7
Dinv40754 Davidia involucrata HOM05D003917 ORTHO05D005104 4.0e-70 268.5 184 76.6
Glyma.14G023600 Glycine max HOM05D003917 ORTHO05D005104 4.0e-70 268.5 187 73.3
Lalb_Chr15g0081161 Lupinus albus HOM05D003917 ORTHO05D005104 4.0e-70 268.5 189 76.2
VMungo0540G1915 Vigna mungo HOM05D003917 ORTHO05D005104 4.0e-70 268.5 187 76.5
Glyma.08G316200 Glycine max HOM05D003917 ORTHO05D005104 5.2e-70 268.1 187 75.4
arahy.Tifrunner.gnm1.ann1.YBSA71 Arachis hypogaea HOM05D003917 ORTHO05D005104 8.8e-70 267.3 189 74.6
MBI18_g14473_MAGBIO Magnolia biondii HOM05D003917 ORTHO05D005104 1.5e-69 266.5 192 73.4
Sed0004226 Sechium edule HOM05D003917 ORTHO05D005104 1.5e-69 266.5 178 76.4
LjContig00272g0007438 Lotus japonicus HOM05D003917 ORTHO05D005104 2.0e-69 266.2 187 73.3
Ciclev10009443m.g Citrus clementina HOM05D003917 ORTHO05D005104 2.6e-69 265.8 216 67.6
MSTRG.14435 Avicennia marina HOM05D003917 ORTHO05D005104 3.4e-69 265.4 190 75.8
PGSC0003DMG400014388 Solanum tuberosum HOM05D003917 ORTHO05D005104 3.4e-69 265.4 191 75.4
Solyc10g006290.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 5.7e-69 264.6 191 75.4
Sopen10g002240 Solanum pennellii HOM05D003917 ORTHO05D005104 7.5e-69 264.2 191 74.9
Psat5g178840 Pisum sativum HOM05D003917 ORTHO05D005104 3.7e-68 261.9 187 71.7
Lsat_1_v5_gn_5_3940 Lactuca sativa HOM05D003917 ORTHO05D005104 4.8e-68 261.5 185 76.2
Nitab4.5_0004829g0030 Nicotiana tabacum HOM05D003917 ORTHO05D005104 8.3e-68 260.8 205 70.2
HanXRQChr03g0076521 Helianthus annuus HOM05D003917 ORTHO05D005104 1.1e-67 260.4 193 74.1
Peaxi162Scf00834g00044 Petunia axillaris HOM05D003917 ORTHO05D005104 1.8e-67 259.6 189 74.1
PSO832G0061 Papaver somniferum HOM05D003917 ORTHO05D005104 7.0e-67 257.7 189 73.0
Actinidia35344 Actinidia chinensis HOM05D006187 ORTHO05D007621 1.2e-66 256.9 170 80.6
FAN11G2833 Fragaria x ananassa HOM05D003917 ORTHO05D005104 2.0e-66 256.1 157 84.7
Manes.15G071800 Manihot esculenta HOM05D003917 ORTHO05D005104 2.7e-66 255.8 188 70.7
Lalb_Chr20g0113861 Lupinus albus HOM05D003917 ORTHO05D005104 4.5e-66 255.0 187 72.7
TWI39G1026 Tripterygium wilfordii HOM05D003917 ORTHO05D005104 7.7e-66 254.2 189 72.0
Carub.0003s2033 Capsella rubella HOM05D003917 ORTHO05D005104 2.3e-65 252.7 191 73.8
HanXRQChr05g0159361 Helianthus annuus HOM05D003917 ORTHO05D005104 2.9e-65 252.3 185 74.6
PSO210G5830 Papaver somniferum HOM05D003917 ORTHO05D005104 5.0e-65 251.5 189 71.4
Thhalv10021595m.g Eutrema salsugineum HOM05D003917 ORTHO05D005104 1.1e-64 250.4 191 71.7
ECA246G4209 Erigeron canadensis HOM05D003917 ORTHO05D005104 1.5e-64 250.0 189 73.5
Nn1g03531 Nelumbo nucifera HOM05D003917 ORTHO05D005104 2.5e-64 249.2 226 62.8
Aa31LG8G7200 Aethionema arabicum HOM05D003917 ORTHO05D005104 4.2e-64 248.4 191 71.7
AT3G20390 Arabidopsis thaliana HOM05D003917 ORTHO05D005104 5.5e-64 248.1 191 72.8
A05p28510 Brassica napus HOM05D003917 ORTHO05D005104 7.2e-64 247.7 192 71.9
AL3G34100 Arabidopsis lyrata HOM05D003917 ORTHO05D005104 9.5e-64 247.3 191 72.8
Potri.001G435700 Populus trichocarpa HOM05D003917 ORTHO05D005104 1.2e-63 246.9 189 68.8
BcaC05g28323 Brassica carinata HOM05D003917 ORTHO05D005104 2.1e-63 246.1 192 71.4
C05p43960 Brassica napus HOM05D003917 ORTHO05D005104 2.1e-63 246.1 192 71.4
BolC5t33114H Brassica oleracea HOM05D003917 ORTHO05D005104 2.1e-63 246.1 192 71.4
CAN.G1781.2 Capsicum annuum HOM05D003917 ORTHO05D005104 2.8e-63 245.7 161 80.1
BcaB06g26102 Brassica carinata HOM05D003917 ORTHO05D005104 3.6e-63 245.4 193 72.0
BcaB06g26104 Brassica carinata HOM05D003917 ORTHO05D005104 3.6e-63 245.4 193 72.0
Sp3g18400 Schrenkiella parvula HOM05D003917 ORTHO05D005104 1.4e-62 243.4 191 70.2
Duzib093G2089 Durio zibethinus HOM05D003917 ORTHO05D005104 1.8e-62 243.0 187 72.2
HPP92_004132 Vanilla planifolia HOM05D003917 ORTHO05D005104 3.0e-62 242.3 191 68.1
Potri.011G139600 Populus trichocarpa HOM05D003917 ORTHO05D005104 8.8e-62 240.7 189 67.2
THA.LOC104816925 Tarenaya hassleriana HOM05D003917 ORTHO05D005104 8.8e-62 240.7 190 72.6
Medtr5g092740 Medicago truncatula HOM05D003917 ORTHO05D005104 1.2e-61 240.4 188 69.7
unitig_8.g3276 Utricularia gibba HOM05D003917 ORTHO05D005104 1.5e-61 240.0 185 71.4
Psat2g010880 Pisum sativum HOM05D003917 ORTHO05D005104 4.4e-61 238.4 189 67.7
unitig_22.g6623 Utricularia gibba HOM05D001290 ORTHO05D001180 9.8e-61 237.3 185 70.3
CARHR096100 Cardamine hirsuta HOM05D003917 ORTHO05D005104 2.2e-60 236.1 193 69.9
Aqoxy1G03502 Aquilegia oxysepala HOM05D003917 ORTHO05D005104 8.3e-60 234.2 202 65.8
TPR.G1217 Trifolium pratense HOM05D003917 ORTHO05D005104 2.4e-59 232.6 147 83.0
CiPaw.11G189400 Carya illinoinensis HOM05D003917 ORTHO05D005104 1.6e-58 229.9 188 68.6
Os07g0516200 Oryza sativa ssp. japonica HOM05D003917 ORTHO05D005104 5.9e-58 228.0 188 68.6
Oeu005531.1 Olea europaea HOM05D003917 ORTHO05D005104 1.3e-57 226.9 188 67.6
Sabra16G0289800 Salix brachista HOM05D003917 ORTHO05D005104 2.3e-57 226.1 217 59.4
Nitab4.5_0001393g0140 Nicotiana tabacum HOM05D003917 ORTHO05D005104 3.8e-57 225.3 189 66.1
BcaB04g19109 Brassica carinata HOM05D003917 ORTHO05D005104 5.0e-57 224.9 180 70.6
Lj8C169T22 Lonicera japonica HOM05D003917 ORTHO05D005104 8.6e-57 224.2 206 61.7
Lalb_Chr17g0348491 Lupinus albus HOM05D003917 ORTHO05D005104 8.6e-57 224.2 157 76.4
Lj1A872G53 Lonicera japonica HOM05D003917 ORTHO05D005104 1.9e-56 223.0 194 67.5
CDE11G0283 Ceratophyllum demersum HOM05D000789 ORTHO05D005104 1.2e-55 220.3 188 66.5
BcaB04g20655 Brassica carinata HOM05D003917 ORTHO05D005104 3.6e-55 218.8 198 62.1
QL08p010146 Quercus lobata HOM05D003917 ORTHO05D005104 4.7e-55 218.4 125 86.4
C03p51140 Brassica napus HOM05D003917 ORTHO05D005104 8.0e-55 217.6 143 79.7
Zm00001eb322650 Zea mays HOM05D003917 ORTHO05D005104 8.0e-55 217.6 188 68.6
A03p41760 Brassica napus HOM05D003917 ORTHO05D005104 1.0e-54 217.2 143 79.0
BraA03t13329Z Brassica rapa HOM05D003917 ORTHO05D005104 1.0e-54 217.2 143 79.0
Haze_09691 Corylus avellana HOM05D003917 ORTHO05D005104 1.0e-54 217.2 126 86.5
BcaC01g03555 Brassica carinata HOM05D003917 ORTHO05D005104 4.0e-54 215.3 146 77.4
BolC1t04332H Brassica oleracea HOM05D003917 ORTHO05D005104 4.0e-54 215.3 198 65.7
Oeu007580.1 Olea europaea HOM05D003917 ORTHO05D005104 5.2e-54 214.9 125 87.2
Sabra11G0125600 Salix brachista HOM05D003917 ORTHO05D005104 1.2e-53 213.8 124 86.3
Duzib093G1470 Durio zibethinus HOM05D003917 ORTHO05D005104 5.7e-53 211.5 156 71.2
Duzib093G1533 Durio zibethinus HOM05D003917 ORTHO05D005104 7.5e-53 211.1 156 71.2
Lsat_1_v5_gn_9_93900 Lactuca sativa HOM05D003917 ORTHO05D005104 1.3e-52 210.3 155 72.3
BcaC09g48993 Brassica carinata HOM05D003917 ORTHO05D005104 1.4e-51 206.8 200 62.5
Sopen07g032790 Solanum pennellii HOM05D003917 ORTHO05D005104 1.4e-51 206.8 175 64.0
SMO144G0016 Selaginella moellendorffii HOM05D003917 ORTHO05D005104 1.8e-51 206.5 125 83.2
Solyc07g064600.3 Solanum lycopersicum HOM05D003917 ORTHO05D005104 1.8e-51 206.5 181 62.4
PGSC0003DMG400022217 Solanum tuberosum HOM05D003917 ORTHO05D005104 1.6e-50 203.4 181 60.2
BraA01t03528Z Brassica rapa HOM05D003917 ORTHO05D005104 1.3e-49 200.3 152 71.7
C01p43730 Brassica napus HOM05D003917 ORTHO05D005104 2.3e-49 199.5 152 71.7
MELO3C031909.2 Cucumis melo HOM05D003917 ORTHO05D005104 2.3e-49 199.5 146 75.3
A01p34300 Brassica napus HOM05D003917 ORTHO05D005104 3.0e-49 199.1 152 71.7
AagrBONN_evm.TU.Sc2ySwM_117.1972 Anthoceros agrestis HOM05D003917 ORTHO05D005104 6.6e-49 198.0 181 62.4
Mapoly0108s0009 Marchantia polymorpha HOM05D003917 ORTHO05D005104 3.3e-48 195.7 143 69.2
Pp3c13_21770 Physcomitrium patens HOM05D003917 ORTHO05D005104 1.1e-46 190.7 172 61.0
A01p34290 Brassica napus HOM05D003917 ORTHO05D005104 1.4e-46 190.3 201 59.2
Glyma.02G291100 Glycine max HOM05D003917 ORTHO05D005104 1.4e-46 190.3 139 68.3
FAN16G0616 Fragaria x ananassa HOM05D003917 ORTHO05D005104 1.0e-41 174.1 111 81.1
MELO3C025369.2 Cucumis melo HOM05D003917 ORTHO05D005104 8.6e-41 171.0 196 53.1
ClCG10G005350 Citrullus lanatus HOM05D003917 ORTHO05D005104 3.3e-40 169.1 193 52.3
CBR_g32332 Chara braunii HOM05D003917 ORTHO05D005104 7.3e-40 167.9 125 68.0
Sed0024585 Sechium edule HOM05D003917 ORTHO05D005104 1.2e-39 167.2 195 53.3
CsaV3_3G005070 Cucumis sativus L. HOM05D003917 ORTHO05D005104 8.1e-39 164.5 194 51.5
MCO11G845 Micromonas commoda HOM05D003917 ORTHO05D005104 6.8e-38 161.4 124 65.3
Sed0017343 Sechium edule HOM05D003917 ORTHO05D005104 1.5e-37 160.2 189 52.4
Phvul.008G266800 Phaseolus vulgaris HOM05D003917 ORTHO05D005104 2.0e-37 159.8 138 60.9
Cre16.g669650 Chlamydomonas reinhardtii HOM05D003917 ORTHO05D005104 1.4e-35 153.7 163 54.6
PRCOL_00004025 Prasinoderma coloniale HOM05D003917 ORTHO05D005104 7.1e-35 151.4 125 60.8
BraA01t03527Z Brassica rapa HOM05D003917 ORTHO05D005104 6.6e-33 144.8 154 59.1
Oeu042771.1 Olea europaea HOM05D003917 ORTHO05D005104 1.1e-32 144.1 123 66.7
ATR0794G030 Amborella trichopoda HOM05D003917 ORTHO05D005104 2.5e-32 142.9 177 46.9
ATR0776G085 Amborella trichopoda HOM05D003917 ORTHO05D005104 6.2e-31 138.3 159 51.6
BcaC05g28324 Brassica carinata HOM05D000399 ORTHO05D000304 1.4e-30 137.1 96 76.0
BcaC01g01693 Brassica carinata HOM05D003917 ORTHO05D005104 1.2e-29 134.0 79 84.8
ATR0794G138 Amborella trichopoda HOM05D003917 ORTHO05D005104 1.7e-28 130.2 175 45.1
FAN16G0676 Fragaria x ananassa HOM05D003917 ORTHO05D005104 4.9e-28 128.6 69 95.7
Gorai.002G088600 Gossypium raimondii HOM05D003917 ORTHO05D005104 6.6e-25 118.2 68 88.2
Gohir.D01G066600 Gossypium hirsutum HOM05D003917 ORTHO05D005104 2.5e-24 116.3 68 86.8
C01p43720 Brassica napus HOM05D003917 ORTHO05D005104 8.4e-20 101.3 128 53.9
BolC1t04330H Brassica oleracea HOM05D003917 ORTHO05D005104 1.4e-19 100.5 128 53.9
AUR62006502 Chenopodium quinoa HOM05D003917 ORTHO05D024981 3.0e-17 92.8 56 78.6
AUR62016539 Chenopodium quinoa HOM05D003917 ORTHO05D024981 5.1e-17 92.0 53 81.1
CBR_g3731 Chara braunii HOM05D003917 ORTHO05D028724 6.6e-17 91.7 91 54.9
SGA_v2.0_scaffold698G53480 Striga asiatica HOM05D003917 ORTHO05D024981 6.6e-17 91.7 53 84.9
SGA_v2.0_scaffold31G12886 Striga asiatica HOM05D003917 ORTHO05D024981 1.5e-16 90.5 53 83.0
Oeu021198.1 Olea europaea HOM05D003917 ORTHO05D005104 2.5e-16 89.7 47 91.5
Pp3s32_520 Physcomitrium patens HOM05D003917 ORTHO05D309786 3.3e-16 89.4 124 40.3
Sc05g0005010 Simmondsia chinensis HOM05D006016 ORTHO05D007553 7.6e-13 78.2 80 55.0
Aa31LG8G10060 Aethionema arabicum HOM05D002406 ORTHO05D007964 1.6e-10 70.5 116 46.6
BolC6t38526H Brassica oleracea HOM05D003917 ORTHO05D001048 3.9e-09 65.9 57 61.4
BcaC05g26491 Brassica carinata HOM05D003917 ORTHO05D001048 6.7e-09 65.1 47 68.1
C05p25410 Brassica napus HOM05D003917 ORTHO05D001048 6.7e-09 65.1 57 61.4
RcHm_v2.0_Chr5g0039481 Rosa chinensis HOM05D003917 ORTHO05D347315 5.6e-08 62.0 31 100.0
BolC6t39957H Brassica oleracea HOM05D003917 ORTHO05D001048 9.6e-08 61.2 57 57.9


User provided reference genes

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