Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G211600 Prunus persica HOM05D003876 ORTHO05D004560 0.0e+00 5084.2 2589 100.0
MD03G1202300 Malus domestica HOM05D003876 ORTHO05D004560 0.0e+00 3951.4 2609 77.7
RcHm_v2.0_Chr5g0039261 Rosa chinensis HOM05D003876 ORTHO05D004560 0.0e+00 3371.3 2605 68.7
FvH4_3g22520 Fragaria vesca HOM05D003876 ORTHO05D004560 0.0e+00 3201.4 2598 65.6
FAN21G1021 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 3023.8 2573 63.5
QL11p042372 Quercus lobata HOM05D003876 ORTHO05D004560 0.0e+00 3013.8 2610 61.2
Haze_09664 Corylus avellana HOM05D003876 ORTHO05D004560 0.0e+00 2864.7 2672 58.5
CiPaw.11G188300 Carya illinoinensis HOM05D003876 ORTHO05D004560 0.0e+00 2851.2 2619 58.6
FAN16G2970 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 2811.9 2558 60.5
CANSAT21G0957 Cannabis sativa HOM05D003876 ORTHO05D004560 0.0e+00 2803.9 2615 57.9
Dinv12032 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2768.4 2627 56.6
Atru.chr2.3354 Acer truncatum HOM05D003876 ORTHO05D004560 0.0e+00 2762.6 2632 57.1
Dinv31299 Davidia involucrata HOM05D003876 ORTHO05D004560 0.0e+00 2751.1 2620 56.4
FAN11G2639 Fragaria x ananassa HOM05D003876 ORTHO05D004560 0.0e+00 2731.4 2522 59.8
Potri.001G423600 Populus trichocarpa HOM05D003876 ORTHO05D004560 0.0e+00 2702.5 2627 56.0
Duzib213G0609 Durio zibethinus HOM05D003876 ORTHO05D004560 0.0e+00 2678.7 2635 55.6
Manes.15G088800 Manihot esculenta HOM05D003876 ORTHO05D004560 0.0e+00 2608.6 2629 54.2
Gorai.009G353000 Gossypium raimondii HOM05D003876 ORTHO05D004560 0.0e+00 2558.9 2632 53.6
TAR626G1614 Trochodendron aralioides HOM05D003876 ORTHO05D004560 0.0e+00 2541.9 2642 53.6
TWI38G0366 Tripterygium wilfordii HOM05D003876 ORTHO05D004560 0.0e+00 2539.6 2625 53.0
Gohir.D05G329600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 2515.3 2632 53.1
GSVIVG01037632001 Vitis vinifera HOM05D003876 ORTHO05D004560 0.0e+00 2464.1 2698 51.5
Lalb_Chr15g0081151 Lupinus albus HOM05D003876 ORTHO05D004560 0.0e+00 2439.1 2580 51.8
Hma1.2p1_1927F.1_g307790 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2407.5 2607 51.4
Hma1.2p1_1458F.1_g284750 Hydrangea macrophylla HOM05D003876 ORTHO05D004560 0.0e+00 2382.1 2671 50.3
Rhsim03G0118500 Rhododendron simsii HOM05D003876 ORTHO05D004560 0.0e+00 2348.5 2731 49.6
Thecc.07G169600 Theobroma cacao HOM05D003876 ORTHO05D004560 0.0e+00 2347.8 2237 56.1
PGR031G0089 Punica granatum HOM05D003876 ORTHO05D004560 0.0e+00 2343.5 2593 50.6
arahy.Tifrunner.gnm1.ann1.CB0JBU Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2310.4 2614 48.7
Glyma.08G316100 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 2307.7 2591 49.8
Eucgr.F03461 Eucalyptus grandis HOM05D003876 ORTHO05D004560 0.0e+00 2289.6 2608 48.8
Ca_01714_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 0.0e+00 2287.7 2593 49.7
arahy.Tifrunner.gnm1.ann1.S1L982 Arachis hypogaea HOM05D003876 ORTHO05D004560 0.0e+00 2281.5 2593 48.7
TPR.G34799 Trifolium pratense HOM05D003876 ORTHO05D004560 0.0e+00 2246.1 2582 48.8
ClCG09G008390 Citrullus lanatus HOM05D003876 ORTHO05D004560 0.0e+00 2236.1 2587 49.2
Psat7g030440 Pisum sativum HOM05D003876 ORTHO05D004560 0.0e+00 2232.6 2589 49.0
Medtr3g051730 Medicago truncatula HOM05D003876 ORTHO05D004560 0.0e+00 2222.2 2604 48.0
Sed0026666 Sechium edule HOM05D003876 ORTHO05D004560 0.0e+00 2213.7 2586 48.2
MELO3C021122.2 Cucumis melo HOM05D003876 ORTHO05D004560 0.0e+00 2210.3 2584 48.8
CsaV3_7G026680 Cucumis sativus L. HOM05D003876 ORTHO05D004560 0.0e+00 2205.6 2584 48.9
vmacro22462 Vaccinium macrocarpon HOM05D003876 ORTHO05D004560 0.0e+00 2195.2 2595 49.3
Lj6g0024588 Lotus japonicus HOM05D003876 ORTHO05D004560 0.0e+00 2189.5 2564 49.1
Cc02_g11170 Coffea canephora HOM05D003876 ORTHO05D004560 0.0e+00 2159.4 2589 46.9
Nn1g07120 Nelumbo nucifera HOM05D003876 ORTHO05D004560 0.0e+00 2147.9 2377 50.4
Cpa.g.sc25.33 Carica papaya HOM05D003876 ORTHO05D004560 0.0e+00 2126.7 2536 48.4
Peaxi162Scf01227g00036 Petunia axillaris HOM05D003876 ORTHO05D004560 0.0e+00 2113.6 2588 46.9
THA.LOC104817664 Tarenaya hassleriana HOM05D003876 ORTHO05D004560 0.0e+00 2100.9 2626 46.3
Aa31LG5G10400 Aethionema arabicum HOM05D003876 ORTHO05D004560 0.0e+00 2088.2 2609 46.6
MSTRG.9162 Avicennia marina HOM05D003876 ORTHO05D004560 0.0e+00 2072.7 2609 46.1
Sc07g0002730 Simmondsia chinensis HOM05D003876 ORTHO05D004560 0.0e+00 2066.2 2590 46.1
CAN.G93.17 Capsicum annuum HOM05D003876 ORTHO05D004560 0.0e+00 2051.6 2585 46.1
Sopen02g015700 Solanum pennellii HOM05D003876 ORTHO05D004560 0.0e+00 2046.6 2602 45.5
Aqoxy1G03250 Aquilegia oxysepala HOM05D003876 ORTHO05D004560 0.0e+00 2039.2 2671 45.0
AL7G25820 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 2032.3 2611 46.0
SalBow4G0850 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1991.9 2614 44.9
AT4G27010 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1974.1 2653 44.7
Oeu042740.2 Olea europaea HOM05D003876 ORTHO05D004560 0.0e+00 1973.7 2753 43.2
SalBow4G0132 Salvia bowleyana HOM05D003876 ORTHO05D004560 0.0e+00 1972.6 2669 44.2
EL10Ac4g07826 Beta vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1962.2 2629 44.7
MBI16_g24182_MAGBIO Magnolia biondii HOM05D003876 ORTHO05D004560 0.0e+00 1960.7 2662 43.4
Hund02060 Selenicereus undatus HOM05D003876 ORTHO05D004560 0.0e+00 1946.4 2617 43.9
AUR62020460 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1939.5 2686 44.3
PSO675G8409 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1936.8 2654 43.6
PSO541G2928 Papaver somniferum HOM05D003876 ORTHO05D004560 0.0e+00 1932.9 2686 43.4
Sp7g24970 Schrenkiella parvula HOM05D003876 ORTHO05D004560 0.0e+00 1932.1 2693 43.6
SGA_v2.0_scaffold13G06370 Striga asiatica HOM05D003876 ORTHO05D004560 0.0e+00 1910.2 2614 43.5
AUR62015755 Chenopodium quinoa HOM05D003876 ORTHO05D004560 0.0e+00 1903.3 2646 44.4
HanXRQChr14g0456751 Helianthus annuus HOM05D003876 ORTHO05D004560 0.0e+00 1900.6 2598 44.0
ECA238G2706 Erigeron canadensis HOM05D003876 ORTHO05D004560 0.0e+00 1892.1 2566 43.6
Glyma.18G096800 Glycine max HOM05D003876 ORTHO05D004560 0.0e+00 1882.5 2134 50.3
Ciclev10007236m.g Citrus clementina HOM05D003876 ORTHO05D004560 0.0e+00 1875.9 1791 56.4
Lsat_1_v5_gn_2_112761 Lactuca sativa HOM05D003876 ORTHO05D004560 0.0e+00 1837.8 2579 43.6
Thhalv10024185m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1826.2 2452 43.8
C01p23130 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1818.5 2666 42.3
A01p18170 Brassica napus HOM05D003876 ORTHO05D004560 0.0e+00 1801.2 2660 42.2
BolC1t02247H Brassica oleracea HOM05D003876 ORTHO05D004560 0.0e+00 1795.0 2688 41.6
BraA01t01772Z Brassica rapa HOM05D003876 ORTHO05D004560 0.0e+00 1787.3 2693 41.7
AL1G51930 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1727.2 2601 41.6
Migut.F01968 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1726.1 2582 41.1
Phvul.006G043300 Phaseolus vulgaris HOM05D003876 ORTHO05D004560 0.0e+00 1696.4 2020 47.0
Ah.14g087580 Amaranthus hybridus HOM05D003876 ORTHO05D004560 0.0e+00 1685.2 2589 41.0
Thhalv10009735m.g Eutrema salsugineum HOM05D003876 ORTHO05D004560 0.0e+00 1666.7 2616 40.9
Nitab4.5_0000071g0230 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1643.2 2283 43.2
Migut.D01652 Erythranthe guttata HOM05D003876 ORTHO05D004560 0.0e+00 1636.7 2345 42.6
Gohir.A05G328600 Gossypium hirsutum HOM05D003876 ORTHO05D004560 0.0e+00 1626.7 1753 51.5
AL1G52050 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 0.0e+00 1623.6 2595 40.2
Zm00001eb070180 Zea mays HOM05D003876 ORTHO05D004560 0.0e+00 1600.9 2663 38.3
AT1G72270 Arabidopsis thaliana HOM05D003876 ORTHO05D004560 0.0e+00 1592.8 2582 40.0
DCAR_015293 Daucus carota HOM05D003876 ORTHO05D004560 0.0e+00 1546.6 2043 44.2
Carub.0007s1383 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1536.9 2236 41.8
Solyc02g065500.4 Solanum lycopersicum HOM05D003876 ORTHO05D004560 0.0e+00 1488.0 2034 42.9
ATR0752G176 Amborella trichopoda HOM05D003876 ORTHO05D004560 0.0e+00 1459.9 2355 39.0
Carub.0004s0902 Capsella rubella HOM05D003876 ORTHO05D004560 0.0e+00 1388.2 2208 40.2
SHI26626 Sapria himalayana HOM05D003876 ORTHO05D004560 0.0e+00 1290.8 2134 39.5
Lj4A311T24 Lonicera japonica HOM05D003876 ORTHO05D004560 0.0e+00 1280.0 1768 44.1
BcaNung03576 Brassica carinata HOM05D003876 ORTHO05D004560 0.0e+00 1255.0 2525 35.3
Nitab4.5_0014432g0010 Nicotiana tabacum HOM05D003876 ORTHO05D004560 0.0e+00 1206.8 1727 42.3
CSS0014906 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 5.9e-273 946.0 913 55.3
Lj4C311T3 Lonicera japonica HOM05D003876 ORTHO05D004560 2.3e-253 880.9 775 61.0
COL.COLO4_07980 Corchorus olitorius HOM05D003876 ORTHO05D004560 2.7e-246 857.4 811 56.4
CARHR234630 Cardamine hirsuta HOM05D003876 ORTHO05D004560 6.4e-219 766.5 1257 38.8
CDE12G0710 Ceratophyllum demersum HOM05D003876 ORTHO05D004560 2.0e-204 718.4 2555 26.7
Mapoly0015s0081 Marchantia polymorpha HOM05D003876 ORTHO05D004560 3.8e-203 714.1 2759 26.0
COL.COLO4_07981 Corchorus olitorius HOM05D003876 ORTHO05D004560 3.1e-197 694.5 617 61.9
HPP92_009566 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.4e-194 685.6 1141 38.5
CSS0021387 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.6e-190 672.2 587 61.7
Pp3c2_30140 Physcomitrium patens HOM05D003876 ORTHO05D004560 4.8e-190 670.6 2827 25.5
Lj4C310T3 Lonicera japonica HOM05D003876 ORTHO05D004560 3.9e-176 624.4 1110 37.5
VMungo0540G1458 Vigna mungo HOM05D003876 ORTHO05D004560 2.0e-172 612.1 638 53.9
Rhsim09G0102800 Rhododendron simsii HOM05D003876 ORTHO05D005443 6.7e-168 597.0 1138 36.2
AL2G26020 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 9.1e-165 586.6 729 47.3
SMO146G0332 Selaginella moellendorffii HOM05D003876 ORTHO05D004560 1.7e-158 565.8 2544 24.7
AagrBONN_evm.TU.Sc2ySwM_362.592 Anthoceros agrestis HOM05D003876 ORTHO05D004560 2.2e-158 565.5 2833 24.4
Ciclev10007711m.g Citrus clementina HOM05D003876 ORTHO05D004560 4.5e-156 557.8 553 57.0
SEGI_24019 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 3.5e-148 531.6 905 37.8
VMungo0540G0476 Vigna mungo HOM05D003876 ORTHO05D004560 1.8e-141 509.2 532 51.3
HPP92_009565 Vanilla planifolia HOM05D003876 ORTHO05D004560 1.2e-140 506.5 755 42.4
Lj4A310T24 Lonicera japonica HOM05D003876 ORTHO05D004560 1.6e-132 479.6 647 46.1
CARHR233850 Cardamine hirsuta HOM05D003876 ORTHO05D004560 1.3e-131 476.5 918 35.1
CSS0042398 Camellia sinensis var. sinensis HOM05D003876 ORTHO05D004560 1.8e-125 456.1 422 55.7
CARHR234640 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.4e-111 408.7 496 45.8
Haze_08116 Corylus avellana HOM05D003876 ORTHO05D004560 3.9e-107 395.2 316 66.8
CARHR229820 Cardamine hirsuta HOM05D003876 ORTHO05D004560 2.7e-100 372.5 464 48.5
BcaNung03573 Brassica carinata HOM05D003876 ORTHO05D004560 8.1e-97 360.9 340 58.8
SEGI_05754 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 4.0e-96 358.6 709 34.8
CBR_g48672 Chara braunii HOM05D003876 ORTHO05D004560 1.9e-85 323.2 2917 21.9
Ciclev10007833m.g Citrus clementina HOM05D003876 ORTHO05D004560 2.4e-85 322.8 389 47.8
AL1048U10010 Arabidopsis lyrata HOM05D003876 ORTHO05D004560 3.8e-70 272.3 514 34.4
RcHm_v2.0_Chr5g0039221 Rosa chinensis HOM05D003876 ORTHO05D004560 1.2e-68 267.3 203 67.0
Psat3g160280 Pisum sativum HOM05D003876 ORTHO05D004560 4.6e-60 238.8 349 40.4
Glyma.02G172300 Glycine max HOM05D003876 ORTHO05D004560 3.9e-59 235.7 183 62.8
Ca_01853_v3 Cicer arietinum L. HOM05D003876 ORTHO05D004560 2.8e-57 229.6 184 65.8
Gohir.A05G328616 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.7e-52 213.0 236 52.1
CARHR229800 Cardamine hirsuta HOM05D003876 ORTHO05D004560 8.8e-51 208.0 330 39.7
Os04g0625300 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 4.1e-48 199.1 347 36.3
Nn004s41399 Nelumbo nucifera HOM05D003876 ORTHO05D004560 9.1e-48 198.0 238 47.5
RcHm_v2.0_Chr5g0039171 Rosa chinensis HOM05D003876 ORTHO05D004560 7.7e-47 194.9 154 66.9
Lj4A310G25 Lonicera japonica HOM05D003876 ORTHO05D004560 1.4e-43 184.1 232 44.4
FAN25G0312 Fragaria x ananassa HOM05D003876 ORTHO05D004560 4.1e-40 172.6 126 69.0
Gohir.A05G328608 Gossypium hirsutum HOM05D003876 ORTHO05D004560 2.6e-39 169.9 143 60.8
CARHR229810 Cardamine hirsuta HOM05D003876 ORTHO05D004560 3.2e-37 162.9 250 34.4
SHI26628 Sapria himalayana HOM05D003876 ORTHO05D004560 1.0e-35 157.9 346 33.5
ATR0752G210 Amborella trichopoda HOM05D003876 ORTHO05D004560 9.7e-34 151.4 233 41.2
SEGI_37008 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.2e-31 144.4 324 34.0
Zm00001eb004360 Zea mays HOM05D003876 ORTHO05D000530 8.5e-30 138.3 139 51.8
Os04g0625350 Oryza sativa ssp. japonica HOM05D003876 ORTHO05D004560 1.9e-29 137.1 212 41.0
SHI26627 Sapria himalayana HOM05D003876 ORTHO05D004560 4.7e-28 132.5 120 54.2
Thecc.07G167900 Theobroma cacao HOM05D003876 ORTHO05D004560 2.6e-26 126.7 342 31.6
QL08p011039 Quercus lobata HOM05D003876 ORTHO05D004560 6.3e-25 122.1 120 57.5
Psat7g035480 Pisum sativum HOM05D003876 ORTHO05D004560 5.9e-23 115.5 145 45.5
MCO01G437 Micromonas commoda HOM05D003876 ORTHO05D004560 1.1e-21 111.3 347 25.1
Psat7g202680 Pisum sativum HOM05D003876 ORTHO05D004560 5.5e-21 109.0 92 57.6
RcHm_v2.0_Chr5g0039541 Rosa chinensis HOM05D003876 ORTHO05D004560 6.1e-20 105.5 70 71.4
Zm00001eb254380 Zea mays HOM05D002934 ORTHO05D004560 1.8e-19 104.0 337 27.6
Zm00001eb276420 Zea mays HOM05D002934 ORTHO05D004560 1.8e-19 104.0 337 27.6
HPP92_009518 Vanilla planifolia HOM05D003876 ORTHO05D004560 4.0e-19 102.8 175 37.7
QL08p010601 Quercus lobata HOM05D003876 ORTHO05D004560 7.5e-18 98.6 102 50.0
Nitab4.5_0014432g0020 Nicotiana tabacum HOM05D003876 ORTHO05D004560 6.3e-17 95.5 71 62.0
Psat1g105760 Pisum sativum HOM05D003876 ORTHO05D004560 6.3e-17 95.5 366 25.4
SEGI_11631 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 8.3e-17 95.1 418 25.6
QL08p010686 Quercus lobata HOM05D003876 ORTHO05D004560 1.1e-16 94.7 83 63.9
Atru.chr2.3366 Acer truncatum HOM05D003876 ORTHO05D004560 2.4e-16 93.6 116 42.2
MELO3C029177.2 Cucumis melo HOM05D003876 ORTHO05D004560 1.6e-15 90.9 129 38.0
PSO478G0467 Papaver somniferum HOM05D003876 ORTHO05D004560 8.6e-14 85.1 123 41.5
QL08p010874 Quercus lobata HOM05D003876 ORTHO05D004560 3.3e-13 83.2 90 56.7
QL08p010640 Quercus lobata HOM05D003876 ORTHO05D004560 1.0e-11 78.2 263 29.3
SEGI_19037 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 5.2e-11 75.9 194 32.5
QL08p010925 Quercus lobata HOM05D003876 ORTHO05D004560 1.2e-10 74.7 55 69.1
SEGI_30448 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 1.2e-10 74.7 228 27.6
QL10p036392 Quercus lobata HOM05D003876 ORTHO05D004560 2.6e-10 73.6 94 47.9
QL08p010959 Quercus lobata HOM05D003876 ORTHO05D004560 3.7e-09 69.7 47 74.5
Cre02.g074300 Chlamydomonas reinhardtii HOM05D003876 ORTHO05D004560 1.1e-08 68.2 196 26.0
QL08p010650 Quercus lobata HOM05D003876 ORTHO05D004560 1.8e-08 67.4 54 61.1
QL10p036338 Quercus lobata HOM05D003876 ORTHO05D004560 1.8e-08 67.4 54 61.1
arahy.Tifrunner.gnm1.ann1.PHJ7DT Arachis hypogaea HOM05D003876 ORTHO05D004560 2.7e-07 63.5 130 35.4
SEGI_04455 Sequoiadendron giganteum HOM05D003876 ORTHO05D004560 2.7e-07 63.5 107 29.9
Psat5g198920 Pisum sativum HOM05D003876 ORTHO05D004560 1.7e-06 60.8 90 40.0


User provided reference genes

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