Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G182400 Prunus persica HOM05D002824 ORTHO05D008771 7.2e-87 323.9 170 100.0
Prupe.4G182300 Prunus persica HOM05D002824 ORTHO05D008771 2.0e-36 156.4 154 60.4
FAN11G2965 Fragaria x ananassa HOM05D002824 ORTHO05D008771 3.7e-35 152.1 143 62.9
FAN21G0827 Fragaria x ananassa HOM05D002824 ORTHO05D008771 4.9e-35 151.8 143 62.9
RcHm_v2.0_Chr5g0034161 Rosa chinensis HOM05D002824 ORTHO05D008771 1.5e-31 140.2 131 66.4
MD11G1244000 Malus domestica HOM05D002824 ORTHO05D008771 5.6e-31 138.3 175 53.1
FAN16G1250 Fragaria x ananassa HOM05D002824 ORTHO05D008771 4.4e-28 128.6 134 58.2
FAN25G0310 Fragaria x ananassa HOM05D002824 ORTHO05D008771 5.8e-28 128.3 134 58.2
FvH4_3g20270 Fragaria vesca HOM05D002824 ORTHO05D008771 2.9e-27 125.9 128 59.4
QL08p021656 Quercus lobata HOM05D002824 ORTHO05D008771 8.6e-24 114.4 151 51.0
Psat4g172920 Pisum sativum HOM05D002824 ORTHO05D008771 1.5e-23 113.6 155 47.1
ClCG11G018100 Citrullus lanatus HOM05D002824 ORTHO05D008771 1.9e-23 113.2 90 62.2
Sed0016999 Sechium edule HOM05D002824 ORTHO05D008771 4.3e-23 112.1 137 47.4
CsaV3_4G033730 Cucumis sativus L. HOM05D002824 ORTHO05D008771 7.3e-23 111.3 82 67.1
MELO3C016702.2 Cucumis melo HOM05D002824 ORTHO05D008771 2.1e-22 109.8 131 48.9
TPR.G40092 Trifolium pratense HOM05D002824 ORTHO05D008771 2.1e-22 109.8 159 46.5
VMungo1215G1991 Vigna mungo HOM05D002824 ORTHO05D008771 2.8e-22 109.4 146 47.9
Lalb_Chr01g0006541 Lupinus albus HOM05D002824 ORTHO05D008771 4.7e-22 108.6 156 44.9
Nitab4.5_0000676g0190 Nicotiana tabacum HOM05D002824 ORTHO05D008771 1.1e-21 107.5 69 71.0
Nitab4.5_0005206g0060 Nicotiana tabacum HOM05D002824 ORTHO05D008771 1.1e-21 107.5 69 71.0
Peaxi162Scf00652g00418 Petunia axillaris HOM05D002824 ORTHO05D008771 1.1e-21 107.5 69 71.0
CiPaw.11G169000 Carya illinoinensis HOM05D002824 ORTHO05D008771 2.4e-21 106.3 145 50.3
Manes.07G025200 Manihot esculenta HOM05D002824 ORTHO05D008771 2.4e-21 106.3 98 58.2
Phvul.003G183400 Phaseolus vulgaris HOM05D002824 ORTHO05D008771 2.4e-21 106.3 143 44.8
Sabra06G0188500 Salix brachista HOM05D002824 ORTHO05D008771 2.4e-21 106.3 96 58.3
Solyc12g098350.1 Solanum lycopersicum HOM05D002824 ORTHO05D008771 3.1e-21 105.9 69 69.6
Sopen12g033130 Solanum pennellii HOM05D002824 ORTHO05D008771 3.1e-21 105.9 69 69.6
PGSC0003DMG400007705 Solanum tuberosum HOM05D002824 ORTHO05D008771 3.1e-21 105.9 69 69.6
Atru.chr1.2540 Acer truncatum HOM05D002824 ORTHO05D008771 5.2e-21 105.1 86 61.6
Medtr8g061130 Medicago truncatula HOM05D002824 ORTHO05D008771 5.2e-21 105.1 153 45.1
Potri.018G038900 Populus trichocarpa HOM05D002824 ORTHO05D008771 6.9e-21 104.8 79 64.6
Manes.10G116800 Manihot esculenta HOM05D002824 ORTHO05D008771 8.9e-21 104.4 83 61.4
Eucgr.G00343 Eucalyptus grandis HOM05D002824 ORTHO05D008771 1.5e-20 103.6 77 63.6
Potri.006G241100 Populus trichocarpa HOM05D002824 ORTHO05D008771 1.5e-20 103.6 79 64.6
Atru.chr9.2077 Acer truncatum HOM05D002824 ORTHO05D008771 2.0e-20 103.2 143 49.0
Glyma.17G080200 Glycine max HOM05D002824 ORTHO05D008771 2.6e-20 102.8 140 46.4
Lj3g0012155 Lotus japonicus HOM05D002824 ORTHO05D008771 2.6e-20 102.8 152 45.4
Glyma.05G019600 Glycine max HOM05D002824 ORTHO05D008771 3.4e-20 102.4 146 44.5
DCAR_032520 Daucus carota HOM05D002824 ORTHO05D008771 4.4e-20 102.1 77 64.9
HanXRQChr00c0394g0574551 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
HanXRQChr00c0593g0576361 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
HanXRQChr00c0925g0577891 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
HanXRQChr01g0020221 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
HanXRQChr04g0127491 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
HanXRQChr05g0152571 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
HanXRQChr10g0284381 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
HanXRQChr10g0318061 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
HanXRQChr11g0321091 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
HanXRQChr11g0326961 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
HanXRQChr12g0369851 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
HanXRQChr15g0486561 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
HanXRQCPg0580181 Helianthus annuus HOM05D002824 ORTHO05D008771 5.8e-20 101.7 77 63.6
CAN.G767.42 Capsicum annuum HOM05D002824 ORTHO05D008771 7.6e-20 101.3 69 66.7
arahy.Tifrunner.gnm1.ann1.RFE8PP Arachis hypogaea HOM05D002824 ORTHO05D008771 9.9e-20 100.9 86 58.1
Aqoxy7G01548 Aquilegia oxysepala HOM05D002824 ORTHO05D008771 1.7e-19 100.1 72 61.1
PGR042G2139 Punica granatum HOM05D002824 ORTHO05D008771 1.7e-19 100.1 128 46.1
Ah.10g027210 Amaranthus hybridus HOM05D000964 ORTHO05D001488 2.2e-19 99.8 78 61.5
Ah.10g027340 Amaranthus hybridus HOM05D000964 ORTHO05D001488 2.2e-19 99.8 78 61.5
Ah.10g027460 Amaranthus hybridus HOM05D000964 ORTHO05D001488 2.2e-19 99.8 78 61.5
Hma1.2p1_0818F.1_g223320 Hydrangea macrophylla HOM05D002824 ORTHO05D008771 2.2e-19 99.8 72 65.3
EL10Ac5g11668 Beta vulgaris HOM05D002824 ORTHO05D008771 2.9e-19 99.4 77 62.3
Ciclev10022760m.g Citrus clementina HOM05D002824 ORTHO05D008771 2.9e-19 99.4 140 45.0
Lsat_1_v5_gn_2_136980 Lactuca sativa HOM05D002824 ORTHO05D008771 2.9e-19 99.4 75 65.3
PSO548G0003 Papaver somniferum HOM05D002824 ORTHO05D008771 3.8e-19 99.0 77 61.0
Ah.10g028980 Amaranthus hybridus HOM05D000964 ORTHO05D001488 6.4e-19 98.2 78 61.5
Duzib084G0020 Durio zibethinus HOM05D002824 ORTHO05D008771 8.4e-19 97.8 93 57.0
Sc25g0002050 Simmondsia chinensis HOM05D000964 ORTHO05D001488 8.4e-19 97.8 79 59.5
COL.COLO4_21755 Corchorus olitorius HOM05D002824 ORTHO05D008771 2.4e-18 96.3 73 63.0
Duzib205G1549 Durio zibethinus HOM05D002824 ORTHO05D008771 3.2e-18 95.9 93 55.9
Gohir.A12G232300 Gossypium hirsutum HOM05D002824 ORTHO05D008771 3.2e-18 95.9 75 61.3
Gohir.D12G235100 Gossypium hirsutum HOM05D002824 ORTHO05D008771 3.2e-18 95.9 75 61.3
Gorai.008G251300 Gossypium raimondii HOM05D002824 ORTHO05D008771 3.2e-18 95.9 75 61.3
Thecc.03G290100 Theobroma cacao HOM05D002824 ORTHO05D008771 3.2e-18 95.9 75 61.3
Cpa.g.sc321.5 Carica papaya HOM05D002824 ORTHO05D008771 1.6e-17 93.6 65 67.7
THA.LOC104814832 Tarenaya hassleriana HOM05D002824 ORTHO05D008771 2.7e-17 92.8 61 67.2
Aa31LG9G11000 Aethionema arabicum HOM05D002824 ORTHO05D008771 2.3e-16 89.7 78 55.1
AT4G11175 Arabidopsis thaliana HOM05D002824 ORTHO05D008771 2.3e-16 89.7 78 55.1
BcaC04g21113 Brassica carinata HOM05D002824 ORTHO05D008771 2.3e-16 89.7 65 64.6
C09p35540 Brassica napus HOM05D002824 ORTHO05D008771 2.3e-16 89.7 65 64.6
BolC9t56393H Brassica oleracea HOM05D002824 ORTHO05D008771 2.3e-16 89.7 65 64.6
BcaB05g23855 Brassica carinata HOM05D002824 ORTHO05D008771 3.0e-16 89.4 65 63.1
A09p28030 Brassica napus HOM05D002824 ORTHO05D008771 3.0e-16 89.4 65 63.1
BraA09t38371Z Brassica rapa HOM05D002824 ORTHO05D008771 3.0e-16 89.4 65 63.1
Sc16g0004450 Simmondsia chinensis HOM05D002824 ORTHO05D008771 3.0e-16 89.4 95 49.5
AL6G45360 Arabidopsis lyrata HOM05D002824 ORTHO05D008771 3.9e-16 89.0 65 61.5
BcaB01g01596 Brassica carinata HOM05D002824 ORTHO05D008771 3.9e-16 89.0 65 61.5
Carub.0006s3001 Capsella rubella HOM05D002824 ORTHO05D008771 3.9e-16 89.0 65 61.5
CARHR255400 Cardamine hirsuta HOM05D002824 ORTHO05D008771 3.9e-16 89.0 65 61.5
Sp6g06240 Schrenkiella parvula HOM05D002824 ORTHO05D008771 3.9e-16 89.0 65 61.5
Thhalv10029051m.g Eutrema salsugineum HOM05D002824 ORTHO05D008771 5.1e-16 88.6 61 63.9
Oeu054718.1 Olea europaea HOM05D002824 ORTHO05D008771 1.1e-15 87.4 74 56.8
HanXRQChr02g0052601 Helianthus annuus HOM05D002824 ORTHO05D008771 4.3e-15 85.5 59 66.1
Medtr0002s0770 Medicago truncatula HOM05D002824 ORTHO05D008771 7.3e-15 84.7 68 57.4
Hund29957 Selenicereus undatus HOM05D002824 ORTHO05D007162 2.8e-14 82.8 105 43.8
Ca_24278_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 8.1e-14 81.3 51 70.6
SMO358G0035 Selaginella moellendorffii HOM05D002824 ORTHO05D008771 2.4e-13 79.7 64 56.2
Hund04057 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund08802 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund12527 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund19320 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund27962 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund27985 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund28109 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund28268 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund28459 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund28519 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund28529 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund28632 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund28678 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund28746 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund28759 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund28778 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund28846 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund29022 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund29036 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund29217 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund29505 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund29525 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund29537 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund29554 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund29593 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund29605 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund29612 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund29682 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund30031 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund30069 Selenicereus undatus HOM05D002824 ORTHO05D008771 3.1e-13 79.3 74 51.4
Hund30272 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund30490 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund30495 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Hund30544 Selenicereus undatus HOM05D002824 ORTHO05D007162 3.1e-13 79.3 74 51.4
Lsat_1_v5_gn_2_92080 Lactuca sativa HOM05D000964 ORTHO05D004047 6.9e-13 78.2 57 63.2
Lsat_1_v5_gn_3_81720 Lactuca sativa HOM05D000964 ORTHO05D003870 6.9e-13 78.2 57 63.2
Lsat_1_v5_gn_6_69061 Lactuca sativa HOM05D000964 ORTHO05D004047 6.9e-13 78.2 57 63.2
Lsat_1_v5_gn_8_146180 Lactuca sativa HOM05D000964 ORTHO05D003870 6.9e-13 78.2 57 63.2
Cc09_g05310 Coffea canephora HOM05D002824 ORTHO05D008771 4.5e-12 75.5 82 52.4
Hund27578 Selenicereus undatus HOM05D002824 ORTHO05D007162 4.5e-12 75.5 65 53.8
Lsat_1_v5_gn_5_50421 Lactuca sativa HOM05D000964 ORTHO05D003870 5.8e-12 75.1 57 61.4
Lsat_1_v5_gn_0_41600 Lactuca sativa HOM05D000964 ORTHO05D004047 9.9e-12 74.3 93 47.3
Sc20g0004270 Simmondsia chinensis HOM05D000964 ORTHO05D001488 9.9e-12 74.3 69 55.1
PSO782G5188 Papaver somniferum HOM05D002824 ORTHO05D008771 1.7e-11 73.6 96 44.8
Cre04.g218700 Chlamydomonas reinhardtii HOM05D002824 ORTHO05D008771 4.9e-11 72.0 60 53.3
Ca_29478_v3 Cicer arietinum L. HOM05D002824 ORTHO05D008771 8.4e-11 71.2 77 45.5
Hund29164 Selenicereus undatus HOM05D002824 ORTHO05D007162 1.1e-10 70.9 63 54.0
PRCOL_00002279 Prasinoderma coloniale HOM05D002824 ORTHO05D008771 1.4e-10 70.5 68 48.5
Hund26844 Selenicereus undatus HOM05D000964 ORTHO05D001488 1.4e-10 70.5 74 51.4
Peaxi162Scf00299g00114 Petunia axillaris HOM05D002824 ORTHO05D007162 2.1e-09 66.6 79 51.9
Sc20g0003000 Simmondsia chinensis HOM05D002824 ORTHO05D008771 2.7e-09 66.2 53 56.6
vmacro22400 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 3.5e-09 65.9 68 48.5
vmacro22425 Vaccinium macrocarpon HOM05D000964 ORTHO05D001488 3.5e-09 65.9 68 48.5
Hund31501 Selenicereus undatus HOM05D002824 ORTHO05D007162 8.7e-08 61.2 55 52.7
RcHm_v2.0_CPg0501881 Rosa chinensis HOM05D002824 ORTHO05D008771 1.1e-07 60.8 48 50.0
ClCG00G003150 Citrullus lanatus HOM05D002824 ORTHO05D008771 2.8e-06 56.2 47 57.4
MELO3C027648.2 Cucumis melo HOM05D002824 ORTHO05D008771 3.7e-06 55.8 79 45.6


User provided reference genes

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