Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G173900 Prunus persica HOM05D006724 ORTHO05D008514 6.3e-196 687.2 330 100.0
MD11G1255900 Malus domestica HOM05D006724 ORTHO05D008514 3.0e-158 562.0 330 83.3
RcHm_v2.0_Chr5g0032321 Rosa chinensis HOM05D006724 ORTHO05D008514 5.2e-150 534.6 331 79.8
FvH4_3g19250 Fragaria vesca HOM05D006724 ORTHO05D008514 3.0e-145 518.8 331 75.8
FAN11G3114 Fragaria x ananassa HOM05D006724 ORTHO05D008514 3.0e-145 518.8 331 75.8
FAN21G1177 Fragaria x ananassa HOM05D006724 ORTHO05D008514 9.2e-139 497.3 377 67.4
FAN25G2812 Fragaria x ananassa HOM05D006724 ORTHO05D008514 2.5e-136 489.2 366 67.8
QL08p023685 Quercus lobata HOM05D006724 ORTHO05D008514 2.1e-130 469.5 316 74.1
Cfa020617 Carpinus fangiana HOM05D006724 ORTHO05D008514 6.6e-129 464.5 333 70.0
CiPaw.11G166800 Carya illinoinensis HOM05D006724 ORTHO05D008514 2.8e-127 459.1 286 76.2
Dinv14945 Davidia involucrata HOM05D006724 ORTHO05D008514 1.4e-126 456.8 330 69.4
CANSAT35G1416 Cannabis sativa HOM05D006724 ORTHO05D008514 1.8e-126 456.4 297 73.7
Actinidia18778 Actinidia chinensis HOM05D006724 ORTHO05D008514 2.0e-125 453.0 333 68.2
GSVIVG01014275001 Vitis vinifera HOM05D006724 ORTHO05D008514 9.9e-125 450.7 257 82.1
CSS0014927 Camellia sinensis var. sinensis HOM05D006724 ORTHO05D008514 1.3e-124 450.3 334 67.4
arahy.Tifrunner.gnm1.ann1.N2BE0G Arachis hypogaea HOM05D006724 ORTHO05D008514 3.2e-123 445.7 334 66.2
Lj3g0025660 Lotus japonicus HOM05D006724 ORTHO05D008514 4.2e-123 445.3 319 70.2
arahy.Tifrunner.gnm1.ann1.WDE0T2 Arachis hypogaea HOM05D006724 ORTHO05D008514 9.2e-123 444.1 337 65.3
Hma1.2p1_0416F.1_g148420 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 2.1e-122 443.0 336 64.6
Lalb_Chr01g0006641 Lupinus albus HOM05D006724 ORTHO05D008514 2.1e-122 443.0 297 71.7
Rhsim04G0022800 Rhododendron simsii HOM05D006724 ORTHO05D008514 6.0e-122 441.4 338 65.7
Haze_09388 Corylus avellana HOM05D006724 ORTHO05D008514 6.6e-121 438.0 320 69.4
Lj8C153G9 Lonicera japonica HOM05D006724 ORTHO05D008514 1.4e-118 430.3 318 66.4
Duzib213G0893 Durio zibethinus HOM05D006724 ORTHO05D008514 9.0e-118 427.6 336 63.4
Thecc.07G098800 Theobroma cacao HOM05D006724 ORTHO05D008514 1.5e-117 426.8 316 66.8
ClCG11G017740 Citrullus lanatus HOM05D006724 ORTHO05D008514 5.8e-117 424.9 316 64.6
Gorai.002G066900 Gossypium raimondii HOM05D006724 ORTHO05D008514 2.2e-116 422.9 283 68.2
EL10Ac4g08255 Beta vulgaris HOM05D006724 ORTHO05D008514 2.9e-116 422.5 300 67.0
Medtr8g061030 Medicago truncatula HOM05D006724 ORTHO05D008514 1.1e-115 420.6 257 75.5
Sc03g0010250 Simmondsia chinensis HOM05D006724 ORTHO05D008514 1.4e-115 420.2 330 63.0
TPR.G28169 Trifolium pratense HOM05D006724 ORTHO05D008514 1.9e-115 419.9 259 76.1
PSO832G3136 Papaver somniferum HOM05D006724 ORTHO05D008514 2.4e-115 419.5 287 68.6
Psat4g169400 Pisum sativum HOM05D006724 ORTHO05D008514 2.4e-115 419.5 301 67.4
CsaV3_4G033360 Cucumis sativus L. HOM05D006724 ORTHO05D008514 3.2e-115 419.1 313 63.3
PGSC0003DMG400012400 Solanum tuberosum HOM05D006724 ORTHO05D008514 7.1e-115 417.9 285 67.4
Eucgr.F01176 Eucalyptus grandis HOM05D006724 ORTHO05D008514 7.8e-114 414.5 258 71.7
Glyma.06G234800 Glycine max HOM05D006724 ORTHO05D008514 7.8e-114 414.5 287 70.0
CAN.G162.28 Capsicum annuum HOM05D006724 ORTHO05D008514 1.0e-113 414.1 305 63.9
Sopen07g030980 Solanum pennellii HOM05D006724 ORTHO05D008514 2.3e-113 412.9 313 62.6
Solyc07g062750.4 Solanum lycopersicum HOM05D006724 ORTHO05D008514 3.9e-113 412.1 313 62.9
VMungo1127G0638 Vigna mungo HOM05D006724 ORTHO05D008514 3.9e-113 412.1 320 65.0
MELO3C025618.2 Cucumis melo HOM05D006724 ORTHO05D008514 5.1e-113 411.8 316 62.0
Cc05_g11660 Coffea canephora HOM05D006724 ORTHO05D008514 1.9e-112 409.8 258 71.7
Sed0012116 Sechium edule HOM05D006724 ORTHO05D008514 5.6e-112 408.3 320 60.3
THA.LOC104818095 Tarenaya hassleriana HOM05D006724 ORTHO05D008514 2.1e-111 406.4 335 61.2
A05p34310 Brassica napus HOM05D006724 ORTHO05D008514 3.1e-110 402.5 287 64.8
HanXRQChr12g0364011 Helianthus annuus HOM05D006724 ORTHO05D008514 3.1e-110 402.5 304 66.4
Sp3g13350 Schrenkiella parvula HOM05D006724 ORTHO05D008514 6.9e-110 401.4 287 64.8
HPP92_003869 Vanilla planifolia HOM05D006724 ORTHO05D008514 2.0e-109 399.8 328 59.1
Aa31LG8G2350 Aethionema arabicum HOM05D006724 ORTHO05D008514 3.4e-109 399.1 262 69.1
AUR62019487 Chenopodium quinoa HOM05D006724 ORTHO05D008514 3.4e-109 399.1 273 67.0
C05p52090 Brassica napus HOM05D006724 ORTHO05D008514 4.5e-109 398.7 286 64.7
Cpa.g.sc80.3 Carica papaya HOM05D006724 ORTHO05D006683 4.5e-109 398.7 281 68.3
Manes.03G104800 Manihot esculenta HOM05D006724 ORTHO05D008514 4.5e-109 398.7 300 65.0
Phvul.011G156700 Phaseolus vulgaris HOM05D006724 ORTHO05D008514 4.5e-109 398.7 316 63.0
BraA05t22252Z Brassica rapa HOM05D006724 ORTHO05D008514 5.8e-109 398.3 286 65.0
Nitab4.5_0000246g0080 Nicotiana tabacum HOM05D006724 ORTHO05D008514 7.6e-109 397.9 364 56.6
BolC5t33894H Brassica oleracea HOM05D006724 ORTHO05D008514 1.7e-108 396.7 286 64.3
Ah.04g164500 Amaranthus hybridus HOM05D006724 ORTHO05D008514 2.9e-108 396.0 306 63.1
BcaB06g29538 Brassica carinata HOM05D006724 ORTHO05D008514 4.9e-108 395.2 286 64.0
Ciclev10010824m.g Citrus clementina HOM05D006724 ORTHO05D008514 4.9e-108 395.2 328 61.3
DCAR_017120 Daucus carota HOM05D006724 ORTHO05D008514 2.4e-107 392.9 293 64.5
Potri.011G141300 Populus trichocarpa HOM05D006724 ORTHO05D008514 3.2e-107 392.5 340 57.9
SGA_v2.0_scaffold34G13794 Striga asiatica HOM05D006724 ORTHO05D008514 1.6e-106 390.2 328 61.0
Carub.0003s1479 Capsella rubella HOM05D006724 ORTHO05D008514 2.1e-106 389.8 260 67.7
PGR083G0421 Punica granatum HOM05D006724 ORTHO05D008514 2.1e-106 389.8 338 57.1
CARHR090120 Cardamine hirsuta HOM05D006724 ORTHO05D008514 2.7e-106 389.4 270 65.6
Nitab4.5_0000831g0090 Nicotiana tabacum HOM05D006724 ORTHO05D008514 3.5e-106 389.0 313 62.9
AL3G27530 Arabidopsis lyrata HOM05D006724 ORTHO05D008514 7.9e-106 387.9 260 66.2
Lsat_1_v5_gn_9_98661 Lactuca sativa HOM05D006724 ORTHO05D008514 7.9e-106 387.9 299 64.9
AT3G15140 Arabidopsis thaliana HOM05D006724 ORTHO05D008514 1.3e-105 387.1 274 63.9
Aqoxy4G00591 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 3.9e-105 385.6 257 68.5
MSTRG.15243 Avicennia marina HOM05D006724 ORTHO05D008514 6.7e-105 384.8 337 59.1
Migut.M00774 Erythranthe guttata HOM05D006724 ORTHO05D008514 6.7e-105 384.8 297 63.3
Aqoxy4G00685 Aquilegia oxysepala HOM05D006724 ORTHO05D008514 1.1e-104 384.0 257 68.1
Peaxi162Scf00069g01835 Petunia axillaris HOM05D006724 ORTHO05D008514 1.5e-104 383.6 253 70.8
Sabra11G0126900 Salix brachista HOM05D006724 ORTHO05D008514 2.1e-103 379.8 362 55.0
vmacro09520 Vaccinium macrocarpon HOM05D006724 ORTHO05D008514 2.1e-103 379.8 301 61.5
Atru.chr2.2388 Acer truncatum HOM05D006724 ORTHO05D008514 8.1e-103 377.9 246 73.6
ECA240G0540 Erigeron canadensis HOM05D006724 ORTHO05D008514 1.4e-102 377.1 248 73.0
unitig_85.g27410 Utricularia gibba HOM05D006724 ORTHO05D008514 5.3e-102 375.2 321 58.6
SalBow8G1625 Salvia bowleyana HOM05D006724 ORTHO05D008514 1.2e-101 374.0 338 58.0
HPP92_003898 Vanilla planifolia HOM05D006724 ORTHO05D008514 1.4e-99 367.1 279 60.6
Gohir.D01G047400 Gossypium hirsutum HOM05D006724 ORTHO05D008514 7.1e-99 364.8 283 61.5
TWI32G0858 Tripterygium wilfordii HOM05D006724 ORTHO05D008514 7.1e-99 364.8 330 57.6
Zm00001eb281480 Zea mays HOM05D006724 ORTHO05D008514 2.7e-98 362.8 245 69.8
FAN16G1823 Fragaria x ananassa HOM05D006724 ORTHO05D008514 2.9e-92 342.8 352 54.8
DCAR_017097 Daucus carota HOM05D006724 ORTHO05D008514 3.2e-91 339.3 263 57.8
Gohir.A01G060866 Gossypium hirsutum HOM05D006724 ORTHO05D008514 4.6e-90 335.5 208 73.1
AagrBONN_evm.TU.Sc2ySwM_340.295 Anthoceros agrestis HOM05D006724 ORTHO05D008514 6.1e-90 335.1 259 57.9
DCAR_013126 Daucus carota HOM05D006724 ORTHO05D008514 8.2e-87 324.7 246 61.0
Mapoly0005s0020 Marchantia polymorpha HOM05D006724 ORTHO05D008514 5.3e-86 322.0 259 57.9
AUR62036149 Chenopodium quinoa HOM05D006724 ORTHO05D008514 1.5e-85 320.5 207 68.6
Pp3c27_5050 Physcomitrium patens HOM05D006724 ORTHO05D008514 5.9e-85 318.5 259 56.0
DCAR_013127 Daucus carota HOM05D006724 ORTHO05D008514 2.2e-84 316.6 298 50.0
Hma1.2p1_0416F.1_g148440 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 1.6e-82 310.5 178 78.7
CBR_g4826 Chara braunii HOM05D000829 ORTHO05D008514 1.1e-80 304.3 269 52.4
SMO367G0863 Selaginella moellendorffii HOM05D006724 ORTHO05D008514 8.2e-79 298.1 263 54.4
Gohir.A01G060932 Gossypium hirsutum HOM05D006724 ORTHO05D008514 9.7e-72 274.6 263 52.9
Ca_07350_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 9.1e-70 268.1 225 60.0
Nn1g04264 Nelumbo nucifera HOM05D006724 ORTHO05D008514 2.6e-56 223.4 136 75.0
unitig_86.g29838 Utricularia gibba HOM05D006724 ORTHO05D008514 5.7e-56 222.2 157 63.7
arahy.Tifrunner.gnm1.ann1.60K44K Arachis hypogaea HOM05D006724 ORTHO05D008514 6.3e-55 218.8 190 57.4
CDE08G0827 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 1.4e-54 217.6 151 64.2
ATR0602G031 Amborella trichopoda HOM05D006724 ORTHO05D008514 2.5e-51 206.8 150 66.0
Hund22831 Selenicereus undatus HOM05D006724 ORTHO05D008514 2.5e-43 180.3 112 72.3
Hund22832 Selenicereus undatus HOM05D006724 ORTHO05D008514 9.8e-40 168.3 177 51.4
Thhalv10021514m.g Eutrema salsugineum HOM05D006724 ORTHO05D008514 3.7e-39 166.4 286 35.3
arahy.Tifrunner.gnm1.ann1.E3N302 Arachis hypogaea HOM05D006724 ORTHO05D008514 6.3e-39 165.6 159 52.8
TAR627G0912 Trochodendron aralioides HOM05D006724 ORTHO05D008514 1.4e-30 137.9 150 52.7
Hma1.2p1_0416F.1_g148430 Hydrangea macrophylla HOM05D006724 ORTHO05D008514 7.8e-29 132.1 84 71.4
Os06g0353400 Oryza sativa ssp. japonica HOM05D006724 ORTHO05D008514 1.9e-27 127.5 98 63.3
Oeu019299.2 Olea europaea HOM05D006724 ORTHO05D008514 1.6e-26 124.4 134 48.5
Nn1g07335 Nelumbo nucifera HOM05D006724 ORTHO05D008514 1.1e-25 121.7 66 83.3
Ca_24305_v3 Cicer arietinum L. HOM05D006724 ORTHO05D008514 2.5e-19 100.5 62 75.8
Hund21969 Selenicereus undatus HOM05D005005 ORTHO05D006178 1.8e-17 94.4 204 27.0
Cre01.g033950 Chlamydomonas reinhardtii HOM05D005005 ORTHO05D006178 2.3e-17 94.0 200 30.0
CDE02G0934 Ceratophyllum demersum HOM05D006724 ORTHO05D008514 3.1e-17 93.6 62 67.7
PSO384G4770 Papaver somniferum HOM05D005005 ORTHO05D006178 4.0e-17 93.2 208 26.4
EL10Ac4g10102 Beta vulgaris HOM05D005005 ORTHO05D006178 6.8e-17 92.4 203 27.6
MBI19_g20792_MAGBIO Magnolia biondii HOM05D005005 ORTHO05D006178 6.8e-17 92.4 203 26.6
CBR_g41532 Chara braunii HOM05D005005 ORTHO05D006178 8.9e-17 92.0 203 26.6
PSO339G0382 Papaver somniferum HOM05D005005 ORTHO05D006178 8.9e-17 92.0 208 26.0
Hund07434 Selenicereus undatus HOM05D005005 ORTHO05D006178 8.9e-17 92.0 203 27.1
ATR1096G052 Amborella trichopoda HOM05D005005 ORTHO05D006178 1.2e-16 91.7 203 26.1
Eucgr.J00681 Eucalyptus grandis HOM05D005005 ORTHO05D006178 1.2e-16 91.7 204 27.0
Atru.chr3.3001 Acer truncatum HOM05D005005 ORTHO05D006178 2.0e-16 90.9 213 27.2
Sc06g0004720 Simmondsia chinensis HOM05D005005 ORTHO05D006178 2.6e-16 90.5 203 27.1
TAR633G0536 Trochodendron aralioides HOM05D005005 ORTHO05D006178 2.6e-16 90.5 203 26.1
Duzib128G0392 Durio zibethinus HOM05D005005 ORTHO05D006178 3.4e-16 90.1 214 25.2
CDE07G1185 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 5.8e-16 89.4 211 26.5
Eucgr.G03212 Eucalyptus grandis HOM05D005005 ORTHO05D006178 5.8e-16 89.4 203 26.6
Ah.06g194700 Amaranthus hybridus HOM05D005152 ORTHO05D006178 7.6e-16 89.0 204 26.5
CDE04G1798 Ceratophyllum demersum HOM05D005005 ORTHO05D006178 7.6e-16 89.0 211 26.1
AUR62006554 Chenopodium quinoa HOM05D005005 ORTHO05D006178 7.6e-16 89.0 203 25.6
unitig_86.g29839 Utricularia gibba HOM05D006724 ORTHO05D008514 9.9e-16 88.6 81 53.1
GSVIVG01037328001 Vitis vinifera HOM05D005005 ORTHO05D006178 9.9e-16 88.6 203 26.1
PGR119G1568 Punica granatum HOM05D005005 ORTHO05D006178 1.3e-15 88.2 216 26.4
AUR62000208 Chenopodium quinoa HOM05D005005 ORTHO05D006178 2.2e-15 87.4 203 26.1
Nn7g36763 Nelumbo nucifera HOM05D005005 ORTHO05D006178 2.2e-15 87.4 204 25.5
Os01g0280000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 2.2e-15 87.4 203 26.1
Cfa009893 Carpinus fangiana HOM05D005005 ORTHO05D006178 2.9e-15 87.0 204 27.5
DCAR_025325 Daucus carota HOM05D005005 ORTHO05D006178 2.9e-15 87.0 203 25.1
HanXRQChr11g0341211 Helianthus annuus HOM05D005005 ORTHO05D006178 3.7e-15 86.7 203 26.1
MD07G1045900 Malus domestica HOM05D005005 ORTHO05D006178 4.9e-15 86.3 290 24.8
PGR031G0380 Punica granatum HOM05D005005 ORTHO05D006178 1.1e-14 85.1 203 24.6
SGA_v2.0_scaffold232G43481 Striga asiatica HOM05D005005 ORTHO05D006178 1.1e-14 85.1 198 26.3
HPP92_021193 Vanilla planifolia HOM05D005005 ORTHO05D006178 1.4e-14 84.7 203 26.1
Hma1.2p1_1796F.1_g302710 Hydrangea macrophylla HOM05D005005 ORTHO05D006178 3.2e-14 83.6 205 24.9
QL01p016772 Quercus lobata HOM05D005005 ORTHO05D006178 5.4e-14 82.8 203 25.6
Cc04_g14120 Coffea canephora HOM05D006724 ORTHO05D008514 7.1e-14 82.4 59 66.1
SEGI_32986 Sequoiadendron giganteum HOM05D005005 ORTHO05D006178 2.1e-13 80.9 214 26.2
Ciclev10027284m.g Citrus clementina HOM05D005005 ORTHO05D006178 1.0e-12 78.6 210 22.9
Migut.N01858 Erythranthe guttata HOM05D005005 ORTHO05D006178 3.0e-12 77.0 180 25.0
Os01g0618000 Oryza sativa ssp. japonica HOM05D005005 ORTHO05D006178 1.1e-11 75.1 205 27.8
PRCOL_00004087 Prasinoderma coloniale HOM05D000406 ORTHO05D003425 2.5e-11 73.9 217 27.6
SGA_v2.0_scaffold79G25606 Striga asiatica HOM05D006724 ORTHO05D008514 5.8e-08 62.8 41 63.4
Psat7g158200 Pisum sativum HOM05D005005 ORTHO05D006178 8.4e-07 58.9 147 23.1
Psat7g158320 Pisum sativum HOM05D005005 ORTHO05D006178 7.1e-06 55.8 147 22.4


User provided reference genes

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