Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G139700 Prunus persica HOM05D006308 ORTHO05D007820 1.9e-141 505.8 248 100.0
MD10G1202500 Malus domestica HOM05D006308 ORTHO05D007820 8.5e-113 410.6 249 83.5
RcHm_v2.0_Chr5g0026561 Rosa chinensis HOM05D006308 ORTHO05D007820 1.3e-97 360.1 249 73.9
FAN16G0301 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.6e-90 336.7 249 71.1
FvH4_3g15760 Fragaria vesca HOM05D006308 ORTHO05D007820 1.7e-89 333.2 249 71.5
FAN21G3038 Fragaria x ananassa HOM05D006308 ORTHO05D007820 6.6e-89 331.3 249 71.1
Ciclev10021874m.g Citrus clementina HOM05D006308 ORTHO05D007820 3.7e-84 315.5 259 66.8
Atru.chr2.1759 Acer truncatum HOM05D006308 ORTHO05D007820 1.1e-83 313.9 254 66.5
Potri.011G142900 Populus trichocarpa HOM05D006308 ORTHO05D007820 2.4e-83 312.8 256 65.2
Potri.001G458600 Populus trichocarpa HOM05D006308 ORTHO05D007820 3.3e-80 302.4 256 64.8
CANSAT80G1356 Cannabis sativa HOM05D006308 ORTHO05D007820 9.5e-80 300.8 251 63.7
FAN11G0128 Fragaria x ananassa HOM05D006308 ORTHO05D007820 2.1e-79 299.7 187 80.2
Manes.14G016400 Manihot esculenta HOM05D006308 ORTHO05D007820 6.8e-78 294.7 255 62.0
FAN25G0513 Fragaria x ananassa HOM05D006308 ORTHO05D007820 1.2e-77 293.9 187 79.1
ClCG07G010660 Citrullus lanatus HOM05D006308 ORTHO05D007820 2.6e-77 292.7 254 63.0
Lj3g0010937 Lotus japonicus HOM05D006308 ORTHO05D007820 2.2e-76 289.7 244 63.5
CsaV3_4G007640 Cucumis sativus L. HOM05D006308 ORTHO05D007820 6.4e-76 288.1 256 62.1
Sed0010671 Sechium edule HOM05D006308 ORTHO05D007820 1.1e-75 287.3 252 61.9
Glyma.15G255800 Glycine max HOM05D006308 ORTHO05D007820 4.1e-75 285.4 241 63.5
CARHR087450 Cardamine hirsuta HOM05D006308 ORTHO05D007820 5.4e-75 285.0 246 62.2
Phvul.005G057100 Phaseolus vulgaris HOM05D006308 ORTHO05D007820 7.0e-75 284.6 245 61.6
arahy.Tifrunner.gnm1.ann1.1EF43V Arachis hypogaea HOM05D006308 ORTHO05D007820 9.2e-75 284.3 207 71.0
MELO3C016177.2 Cucumis melo HOM05D006308 ORTHO05D007820 9.2e-75 284.3 256 61.7
TWI39G0290 Tripterygium wilfordii HOM05D006308 ORTHO05D007820 9.2e-75 284.3 249 61.8
Lalb_Chr20g0108751 Lupinus albus HOM05D006308 ORTHO05D007820 2.1e-74 283.1 248 62.1
Gorai.009G355200 Gossypium raimondii HOM05D006308 ORTHO05D007820 2.7e-74 282.7 250 62.8
AL3G24610 Arabidopsis lyrata HOM05D006308 ORTHO05D007820 3.5e-74 282.3 224 65.2
Sabra16G0310800 Salix brachista HOM05D006308 ORTHO05D007820 4.6e-74 282.0 305 54.1
CiPaw.12G004900 Carya illinoinensis HOM05D006308 ORTHO05D007820 1.0e-73 280.8 257 60.3
COL.COLO4_07328 Corchorus olitorius HOM05D006308 ORTHO05D007820 3.9e-73 278.9 228 64.9
Sed0016869 Sechium edule HOM05D006308 ORTHO05D007820 3.9e-73 278.9 251 59.8
Gohir.A04G049000 Gossypium hirsutum HOM05D006308 ORTHO05D007820 1.1e-72 277.3 248 61.7
Ca_03675_v3 Cicer arietinum L. HOM05D006308 ORTHO05D007820 1.5e-72 276.9 237 63.7
QL08p064492 Quercus lobata HOM05D006308 ORTHO05D007820 1.9e-72 276.6 319 51.1
Glyma.08G172200 Glycine max HOM05D006308 ORTHO05D007820 3.3e-72 275.8 241 61.8
Sp3g11070 Schrenkiella parvula HOM05D006308 ORTHO05D007820 3.3e-72 275.8 201 71.1
TPR.G9745 Trifolium pratense HOM05D006308 ORTHO05D007820 3.3e-72 275.8 234 62.8
Thhalv10021431m.g Eutrema salsugineum HOM05D006308 ORTHO05D007820 7.3e-72 274.6 201 69.2
Gohir.D05G331300 Gossypium hirsutum HOM05D006308 ORTHO05D007820 7.3e-72 274.6 252 61.1
Duzib213G0994 Durio zibethinus HOM05D006308 ORTHO05D007820 9.5e-72 274.2 224 66.1
AT3G12930 Arabidopsis thaliana HOM05D006308 ORTHO05D007820 1.6e-71 273.5 224 64.3
Carub.0005s0924 Capsella rubella HOM05D006308 ORTHO05D007820 1.6e-71 273.5 215 67.0
Medtr2g069470 Medicago truncatula HOM05D006308 ORTHO05D007820 1.6e-71 273.5 242 62.0
Psat1g011160 Pisum sativum HOM05D006308 ORTHO05D007820 1.6e-71 273.5 175 76.6
Haze_08539 Corylus avellana HOM05D006308 ORTHO05D007820 2.8e-71 272.7 300 53.0
THA.LOC104822752 Tarenaya hassleriana HOM05D006308 ORTHO05D007820 4.7e-71 271.9 201 70.1
Thecc.07G152500 Theobroma cacao HOM05D006308 ORTHO05D007820 1.1e-70 270.8 223 66.4
A01p40570 Brassica napus HOM05D006308 ORTHO05D007820 6.8e-70 268.1 201 67.7
C01p52210 Brassica napus HOM05D006308 ORTHO05D007820 6.8e-70 268.1 201 67.7
BolC1t05161H Brassica oleracea HOM05D006308 ORTHO05D007820 6.8e-70 268.1 201 67.7
BcaC09g48280 Brassica carinata HOM05D006308 ORTHO05D007820 1.5e-69 266.9 201 67.2
BraA01t04092Z Brassica rapa HOM05D006308 ORTHO05D007820 9.9e-69 264.2 201 67.2
CSS0031885 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 9.9e-69 264.2 192 70.3
CSS0041769 Camellia sinensis var. sinensis HOM05D006308 ORTHO05D007820 9.9e-69 264.2 192 70.3
Hma1.2p1_0334F.1_g128750 Hydrangea macrophylla HOM05D006308 ORTHO05D007820 1.7e-68 263.5 167 77.2
arahy.Tifrunner.gnm1.ann1.HXV25C Arachis hypogaea HOM05D006308 ORTHO05D007820 2.2e-68 263.1 237 60.8
A05p36560 Brassica napus HOM05D006308 ORTHO05D007820 3.7e-68 262.3 178 73.0
Eucgr.F01457 Eucalyptus grandis HOM05D006308 ORTHO05D007820 3.7e-68 262.3 197 69.5
Aa31LG8G150 Aethionema arabicum HOM05D006308 ORTHO05D007820 4.9e-68 261.9 177 72.3
BolC5t34167H Brassica oleracea HOM05D006308 ORTHO05D007820 4.9e-68 261.9 178 72.5
BraA05t22456Z Brassica rapa HOM05D006308 ORTHO05D007820 1.9e-67 260.0 178 72.5
PGSC0003DMG400022127 Solanum tuberosum HOM05D006308 ORTHO05D007820 5.4e-67 258.5 231 60.6
Lj1A905G40 Lonicera japonica HOM05D006308 ORTHO05D007820 1.2e-66 257.3 180 71.1
Solyc07g066460.3 Solanum lycopersicum HOM05D006308 ORTHO05D007820 1.6e-66 256.9 169 74.6
Sopen07g034640 Solanum pennellii HOM05D006308 ORTHO05D007820 1.6e-66 256.9 169 74.6
Nn6g31547 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.1e-66 256.5 166 76.5
Rhsim06G0239000 Rhododendron simsii HOM05D006308 ORTHO05D007820 2.7e-66 256.1 166 73.5
MSTRG.7060 Avicennia marina HOM05D006308 ORTHO05D007820 3.5e-66 255.8 166 74.7
vmacro11665 Vaccinium macrocarpon HOM05D006308 ORTHO05D007820 1.0e-65 254.2 186 69.9
CAN.G943.39 Capsicum annuum HOM05D006308 ORTHO05D007820 1.3e-65 253.8 169 74.0
SalBow8G4544 Salvia bowleyana HOM05D006308 ORTHO05D007820 1.3e-65 253.8 167 74.3
Nitab4.5_0001080g0030 Nicotiana tabacum HOM05D004008 ORTHO05D005383 2.3e-65 253.1 200 68.0
Migut.M01556 Erythranthe guttata HOM05D006308 ORTHO05D007820 3.0e-65 252.7 167 74.3
Peaxi162Scf00452g00832 Petunia axillaris HOM05D006308 ORTHO05D007820 3.0e-65 252.7 164 75.6
GSVIVG01020411001 Vitis vinifera HOM05D006308 ORTHO05D007820 3.3e-64 249.2 163 76.1
SGA_v2.0_scaffold186G40217 Striga asiatica HOM05D006308 ORTHO05D007820 4.3e-64 248.8 195 66.2
C05p54980 Brassica napus HOM05D006308 ORTHO05D007820 7.3e-64 248.1 203 63.5
Aqoxy5G00928 Aquilegia oxysepala HOM05D006308 ORTHO05D007820 1.6e-63 246.9 161 73.9
MBI04_g08705_MAGBIO Magnolia biondii HOM05D006308 ORTHO05D007820 2.1e-63 246.5 167 71.9
Nitab4.5_0001749g0010 Nicotiana tabacum HOM05D004008 ORTHO05D005383 3.6e-63 245.7 164 75.0
Ah.16g106540 Amaranthus hybridus HOM05D006308 ORTHO05D007820 8.1e-63 244.6 167 69.5
CDE06G0902 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 8.1e-63 244.6 163 73.6
HanXRQChr10g0305791 Helianthus annuus HOM05D006308 ORTHO05D007820 1.1e-62 244.2 167 69.5
EL10Ac2g03321 Beta vulgaris HOM05D006308 ORTHO05D007820 4.0e-62 242.3 165 70.9
AUR62043126 Chenopodium quinoa HOM05D006308 ORTHO05D007820 4.0e-62 242.3 167 68.3
ECA234G3728 Erigeron canadensis HOM05D006308 ORTHO05D007820 8.9e-62 241.1 167 68.3
PGR083G0385 Punica granatum HOM05D006308 ORTHO05D007820 1.5e-61 240.4 189 67.7
CDE08G1673 Ceratophyllum demersum HOM05D006308 ORTHO05D007820 1.3e-60 237.3 156 73.7
BcaC05g29223 Brassica carinata HOM05D006308 ORTHO05D007820 2.2e-60 236.5 158 72.8
DCAR_016822 Daucus carota HOM05D006308 ORTHO05D007820 2.9e-60 236.1 166 69.9
Sc06g0001530 Simmondsia chinensis HOM05D006308 ORTHO05D007820 3.8e-60 235.7 164 68.9
BcaB06g25499 Brassica carinata HOM05D006308 ORTHO05D007820 8.4e-60 234.6 250 53.6
unitig_46.g18521 Utricularia gibba HOM05D006308 ORTHO05D007820 2.4e-59 233.0 163 71.8
Cc05_g16080 Coffea canephora HOM05D006308 ORTHO05D007820 4.2e-59 232.3 175 67.4
Lsat_1_v5_gn_5_125241 Lactuca sativa HOM05D006308 ORTHO05D007820 9.2e-59 231.1 217 54.4
Sabra11G0127800 Salix brachista HOM05D006308 ORTHO05D007820 9.2e-59 231.1 198 62.1
PSO017G0504 Papaver somniferum HOM05D006308 ORTHO05D007820 1.3e-57 227.3 161 67.7
PSO170G1595 Papaver somniferum HOM05D006308 ORTHO05D007820 1.3e-57 227.3 161 67.7
ATR0605G149 Amborella trichopoda HOM05D006308 ORTHO05D007820 3.3e-56 222.6 216 56.0
HPP92_015477 Vanilla planifolia HOM05D006308 ORTHO05D007820 9.0e-54 214.5 157 66.9
Oeu051665.1 Olea europaea HOM05D006308 ORTHO05D007820 2.9e-52 209.5 205 55.1
Hund12461 Selenicereus undatus HOM05D006308 ORTHO05D007820 1.1e-51 207.6 173 60.7
Os09g0493600 Oryza sativa ssp. japonica HOM05D006308 ORTHO05D007820 2.1e-50 203.4 175 59.4
VMungo1080G0665 Vigna mungo HOM05D006308 ORTHO05D007820 2.1e-50 203.4 202 55.9
Mapoly0031s0088 Marchantia polymorpha HOM05D006308 ORTHO05D007820 5.1e-49 198.7 183 56.8
SEGI_12516 Sequoiadendron giganteum HOM05D006308 ORTHO05D007820 8.7e-49 198.0 180 55.6
Dinv42509 Davidia involucrata HOM05D006308 ORTHO05D007820 3.3e-48 196.1 149 69.1
Pp3c9_2790 Physcomitrium patens HOM05D006308 ORTHO05D007820 2.1e-47 193.4 170 54.1
AagrBONN_evm.TU.Sc2ySwM_228.3592 Anthoceros agrestis HOM05D006308 ORTHO05D007820 5.3e-46 188.7 165 55.2
TAR381G0490 Trochodendron aralioides HOM05D006308 ORTHO05D007820 3.4e-45 186.0 130 70.8
Manes.06G172000 Manihot esculenta HOM05D006308 ORTHO05D007820 5.6e-40 168.7 150 59.3
Actinidia12793 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.3e-39 167.5 162 55.6
SMO367G0472 Selaginella moellendorffii HOM05D006308 ORTHO05D007820 4.9e-36 155.6 168 49.4
Actinidia07352 Actinidia chinensis HOM05D006308 ORTHO05D007820 1.6e-34 150.6 94 76.6
A01p40580 Brassica napus HOM05D006308 ORTHO05D007820 2.4e-30 136.7 108 64.8
Nn3g19990 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.0e-29 133.7 143 51.7
Nn3g19991 Nelumbo nucifera HOM05D006308 ORTHO05D007820 2.0e-29 133.7 143 51.7
Nn3g18400 Nelumbo nucifera HOM05D006308 ORTHO05D007820 6.5e-28 128.6 85 75.3
Pp3c15_7010 Physcomitrium patens HOM05D006308 ORTHO05D007820 8.2e-23 111.7 114 45.6
Cre03.g205600 Chlamydomonas reinhardtii HOM05D006308 ORTHO05D007820 1.5e-21 107.5 127 44.9
CAN.G337.145 Capsicum annuum HOM05D006308 ORTHO05D007820 2.9e-20 103.2 160 41.2
PRCOL_00002538 Prasinoderma coloniale HOM05D006308 ORTHO05D007820 3.8e-20 102.8 135 39.3
MCO04G467 Micromonas commoda HOM05D006308 ORTHO05D007820 1.1e-19 101.3 119 37.8
Cpa.g.sc10.49 Carica papaya HOM05D006308 ORTHO05D007820 2.0e-16 90.5 127 44.1
CBR_g48397 Chara braunii HOM05D006308 ORTHO05D007820 3.4e-13 79.7 82 48.8
AUR62039167 Chenopodium quinoa HOM05D007854 ORTHO05D138328 1.6e-10 70.9 38 76.3
Actinidia07353 Actinidia chinensis HOM05D006308 ORTHO05D007820 2.0e-08 63.9 43 69.8
Zm00001eb317050 Zea mays HOM05D006308 ORTHO05D007820 1.7e-07 60.8 87 40.2
Prupe.1G233300 Prunus persica HOM05D006725 ORTHO05D008223 8.2e-07 58.5 109 28.4
Pp3c8_14070 Physcomitrium patens HOM05D006725 ORTHO05D008223 1.8e-06 57.4 111 27.0
Hund06064 Selenicereus undatus HOM05D006725 ORTHO05D008223 3.1e-06 56.6 109 33.9
Thecc.02G274200 Theobroma cacao HOM05D006725 ORTHO05D008223 3.1e-06 56.6 146 26.0
COL.COLO4_23620 Corchorus olitorius HOM05D006725 ORTHO05D008223 5.3e-06 55.8 134 29.9
ClCG08G017310 Citrullus lanatus HOM05D006725 ORTHO05D008223 7.0e-06 55.5 144 28.5


User provided reference genes

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