Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G060500 Prunus persica HOM05D002338 ORTHO05D006102 0.0e+00 1090.1 543 100.0
MD05G1301900 Malus domestica HOM05D002338 ORTHO05D006102 2.3e-243 845.5 543 75.9
RcHm_v2.0_Chr5g0010711 Rosa chinensis HOM05D002338 ORTHO05D006102 5.3e-200 701.4 545 63.9
FAN05G5039 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.7e-195 684.1 544 62.3
FvH4_6g24910 Fragaria vesca HOM05D002338 ORTHO05D006102 2.8e-193 679.1 544 62.1
FAN14G3958 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.4e-192 676.0 541 61.9
FAN05G1035 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.5e-189 666.0 536 61.4
FAN02G0479 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.1e-188 662.9 536 61.2
QL05p046957 Quercus lobata HOM05D002338 ORTHO05D006102 7.9e-180 634.4 547 58.7
Haze_06238 Corylus avellana HOM05D002338 ORTHO05D006102 2.3e-179 632.9 549 59.0
Dinv32217 Davidia involucrata HOM05D002338 ORTHO05D006102 2.6e-178 629.4 538 58.7
Cfa000603 Carpinus fangiana HOM05D002338 ORTHO05D006102 1.8e-176 623.2 548 57.3
Hma1.2p1_0987F.1_g244570 Hydrangea macrophylla HOM05D002338 ORTHO05D006102 2.6e-175 619.4 541 57.3
CiPaw.10G058500 Carya illinoinensis HOM05D002338 ORTHO05D006102 3.5e-175 619.0 546 59.5
ClCG03G007760 Citrullus lanatus HOM05D002338 ORTHO05D006102 3.2e-173 612.5 540 56.7
Lalb_Chr18g0054471 Lupinus albus HOM05D002338 ORTHO05D006102 1.4e-171 607.1 546 56.2
Glyma.01G042900 Glycine max HOM05D002338 ORTHO05D006102 2.3e-171 606.3 547 55.4
Sed0024643 Sechium edule HOM05D002338 ORTHO05D006102 5.2e-171 605.1 539 56.8
Lj1P636T28 Lonicera japonica HOM05D002338 ORTHO05D006102 7.4e-170 601.3 541 56.7
GSVIVG01021206001 Vitis vinifera HOM05D002338 ORTHO05D006102 7.4e-170 601.3 545 56.7
Manes.06G033800 Manihot esculenta HOM05D002338 ORTHO05D006102 6.3e-169 598.2 545 55.6
MELO3C002646.2 Cucumis melo HOM05D002338 ORTHO05D006102 3.1e-168 595.9 538 54.8
CSS0007657 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.2e-167 594.0 546 55.5
Cc02_g14860 Coffea canephora HOM05D002338 ORTHO05D006102 1.6e-167 593.6 535 55.3
Ciclev10031207m.g Citrus clementina HOM05D002338 ORTHO05D006102 1.9e-165 586.6 545 55.4
MSTRG.7403 Avicennia marina HOM05D002338 ORTHO05D006102 2.5e-165 586.3 535 55.5
arahy.Tifrunner.gnm1.ann1.2YH6BX Arachis hypogaea HOM05D002338 ORTHO05D006706 9.4e-165 584.3 541 54.0
Lj6g0008317 Lotus japonicus HOM05D002338 ORTHO05D006102 9.4e-165 584.3 547 53.9
CSS0032914 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 2.1e-164 583.2 543 54.1
CsaV3_1G033380 Cucumis sativus L. HOM05D002338 ORTHO05D006102 2.7e-164 582.8 539 54.4
Oeu030709.1 Olea europaea HOM05D002338 ORTHO05D006102 6.1e-164 581.6 540 54.6
Ca_00873_v3 Cicer arietinum L. HOM05D002338 ORTHO05D006102 5.7e-162 575.1 545 53.2
Phvul.002G066000 Phaseolus vulgaris HOM05D002338 ORTHO05D006102 2.8e-161 572.8 550 53.8
Rhsim09G0087800 Rhododendron simsii HOM05D002338 ORTHO05D006102 6.3e-161 571.6 543 54.5
Rhsim13G0190300 Rhododendron simsii HOM05D002338 ORTHO05D006102 1.4e-160 570.5 543 54.1
VMungo1215G0129 Vigna mungo HOM05D002338 ORTHO05D006102 5.4e-160 568.5 545 53.8
TAR698G0001 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.2e-159 567.4 541 54.9
PGR004G1505 Punica granatum HOM05D002338 ORTHO05D006102 1.0e-158 564.3 545 52.8
Duzib138G0048 Durio zibethinus HOM05D002338 ORTHO05D006102 1.1e-157 560.8 547 55.0
GSVIVG01026940001 Vitis vinifera HOM05D002338 ORTHO05D006102 3.2e-157 559.3 545 54.3
Sabra04G0055900 Salix brachista HOM05D002338 ORTHO05D006102 5.5e-157 558.5 548 52.9
Sabra04G0094200 Salix brachista HOM05D002338 ORTHO05D006102 1.0e-155 554.3 548 53.1
Potri.004G084700 Populus trichocarpa HOM05D002338 ORTHO05D006102 1.4e-155 553.9 549 52.6
CANSAT54G0294 Cannabis sativa HOM05D002338 ORTHO05D006102 7.5e-154 548.1 546 52.6
Medtr2g031410 Medicago truncatula HOM05D002338 ORTHO05D006102 1.1e-152 544.3 544 50.4
Atru.chr2.3891 Acer truncatum HOM05D002338 ORTHO05D006102 1.8e-152 543.5 544 50.0
Peaxi162Scf00753g00411 Petunia axillaris HOM05D002338 ORTHO05D006102 5.4e-152 542.0 539 51.2
TPR.G22268 Trifolium pratense HOM05D002338 ORTHO05D006102 2.0e-151 540.0 544 49.3
Sopen03g002200 Solanum pennellii HOM05D002338 ORTHO05D006102 2.3e-150 536.6 537 51.2
CAN.G943.27 Capsicum annuum HOM05D002338 ORTHO05D006102 1.1e-149 534.3 537 49.9
DCAR_005225 Daucus carota HOM05D002338 ORTHO05D006102 4.2e-149 532.3 542 49.8
Nn1g04395 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.2e-148 530.8 542 52.6
CSS0015305 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 1.6e-148 530.4 548 51.5
SGA_v2.0_scaffold1G00039 Striga asiatica HOM05D002338 ORTHO05D006102 6.1e-148 528.5 535 50.3
PGSC0003DMG400004381 Solanum tuberosum HOM05D002338 ORTHO05D006102 8.0e-148 528.1 537 49.9
Migut.H00865 Erythranthe guttata HOM05D002338 ORTHO05D006102 2.6e-146 523.1 538 50.2
SalBow4G0953 Salvia bowleyana HOM05D002338 ORTHO05D006102 9.8e-146 521.2 541 49.7
COL.COLO4_08893 Corchorus olitorius HOM05D002338 ORTHO05D006102 8.3e-145 518.1 544 52.8
Gorai.007G174700 Gossypium raimondii HOM05D002338 ORTHO05D006102 1.1e-144 517.7 548 52.6
AUR62031197 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.4e-144 516.5 564 46.6
AUR62036936 Chenopodium quinoa HOM05D002338 ORTHO05D006102 5.4e-144 515.4 564 46.8
Gohir.D11G163900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 2.0e-143 513.5 548 52.2
Cpa.g.sc7.51 Carica papaya HOM05D002338 ORTHO05D006102 5.6e-141 505.4 545 47.3
Gohir.A11G156900 Gossypium hirsutum HOM05D002338 ORTHO05D006102 1.2e-140 504.2 545 50.8
AUR62027671 Chenopodium quinoa HOM05D002338 ORTHO05D006102 2.8e-140 503.1 556 46.6
unitig_736.g22955 Utricularia gibba HOM05D002338 ORTHO05D006102 1.3e-137 494.2 539 49.4
TWI38G1256 Tripterygium wilfordii HOM05D002338 ORTHO05D006102 2.2e-137 493.4 464 55.6
EL10Ac8g20603 Beta vulgaris HOM05D002338 ORTHO05D006102 6.4e-137 491.9 564 45.0
Thecc.01G169900 Theobroma cacao HOM05D002338 ORTHO05D006102 4.1e-136 489.2 463 57.2
SHI24483 Sapria himalayana HOM05D002338 ORTHO05D006102 7.8e-135 485.0 546 47.1
Ah.09g233540 Amaranthus hybridus HOM05D002338 ORTHO05D006102 7.3e-133 478.4 572 43.9
PSO675G9291 Papaver somniferum HOM05D002338 ORTHO05D006102 1.1e-131 474.6 542 47.0
PSO541G5199 Papaver somniferum HOM05D002338 ORTHO05D006102 1.4e-131 474.2 542 47.0
CARHR243880 Cardamine hirsuta HOM05D002338 ORTHO05D006102 2.3e-131 473.4 549 47.2
Sp7g33320 Schrenkiella parvula HOM05D002338 ORTHO05D006102 8.9e-131 471.5 544 46.7
Lsat_1_v5_gn_4_49520 Lactuca sativa HOM05D002338 ORTHO05D006102 1.2e-130 471.1 554 46.2
Aqoxy1G02082 Aquilegia oxysepala HOM05D002338 ORTHO05D006102 1.6e-127 460.7 547 47.2
Aa31LG6G12510 Aethionema arabicum HOM05D002338 ORTHO05D006102 3.5e-127 459.5 544 45.8
THA.LOC104826474 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 4.6e-127 459.1 567 46.7
AT4G35540 Arabidopsis thaliana HOM05D002338 ORTHO05D006102 1.0e-126 458.0 549 46.1
Glyma.04G157100 Glycine max HOM05D002338 ORTHO05D006102 1.3e-126 457.6 549 47.2
THA.LOC104827541 Tarenaya hassleriana HOM05D002338 ORTHO05D006102 1.7e-126 457.2 566 46.6
HanXRQChr16g0518871 Helianthus annuus HOM05D002338 ORTHO05D006102 2.3e-126 456.8 544 46.9
HanXRQChr16g0520661 Helianthus annuus HOM05D002338 ORTHO05D006102 7.3e-125 451.8 539 45.6
ECA247G1464 Erigeron canadensis HOM05D002338 ORTHO05D006102 6.2e-124 448.7 550 45.1
AL7G15620 Arabidopsis lyrata HOM05D002338 ORTHO05D006102 1.4e-123 447.6 549 45.0
CSS0032678 Camellia sinensis var. sinensis HOM05D002338 ORTHO05D006102 7.6e-122 441.8 598 43.1
Thhalv10027569m.g Eutrema salsugineum HOM05D002338 ORTHO05D006102 4.3e-117 426.0 544 43.9
MBI18_g09632_MAGBIO Magnolia biondii HOM05D002338 ORTHO05D006102 5.6e-117 425.6 546 44.5
BraA01t00291Z Brassica rapa HOM05D002338 ORTHO05D006102 8.9e-115 418.3 538 43.5
CDE02G4213 Ceratophyllum demersum HOM05D002338 ORTHO05D006102 2.6e-114 416.8 556 42.3
BcaB03g12416 Brassica carinata HOM05D002338 ORTHO05D006102 5.8e-114 415.6 539 41.7
Oeu017495.1 Olea europaea HOM05D002338 ORTHO05D006102 1.3e-113 414.5 538 42.9
A01p03070 Brassica napus HOM05D002338 ORTHO05D006102 2.9e-113 413.3 538 42.8
BcaNung00583 Brassica carinata HOM05D002338 ORTHO05D006102 1.3e-110 404.4 538 41.6
C01p03420 Brassica napus HOM05D002338 ORTHO05D006102 1.3e-110 404.4 538 41.6
BolC1t00329H Brassica oleracea HOM05D002338 ORTHO05D006102 1.3e-110 404.4 538 41.6
DCAR_030917 Daucus carota HOM05D002338 ORTHO05D006102 1.6e-108 397.5 478 44.1
Nn3g21334 Nelumbo nucifera HOM05D002338 ORTHO05D006102 1.8e-107 394.0 434 49.8
Nitab4.5_0002076g0140 Nicotiana tabacum HOM05D002338 ORTHO05D006102 6.9e-107 392.1 537 41.2
Nitab4.5_0007975g0050 Nicotiana tabacum HOM05D002338 ORTHO05D006102 5.4e-104 382.5 525 41.7
FAN16G2383 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.6e-101 371.7 331 57.7
Lj2A298G34 Lonicera japonica HOM05D002338 ORTHO05D006102 3.2e-96 356.7 495 42.0
Sc05g0007130 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.6e-92 344.4 557 38.2
Migut.M01042 Erythranthe guttata HOM05D002338 ORTHO05D006102 1.8e-91 340.9 521 39.7
Solyc03g006177.2 Solanum lycopersicum HOM05D002338 ORTHO05D006102 2.1e-84 317.4 338 48.5
Atru.chr10.1675 Acer truncatum HOM05D002338 ORTHO05D006102 8.4e-81 305.4 309 47.9
ATR0794G026 Amborella trichopoda HOM05D002338 ORTHO05D006102 8.4e-81 305.4 583 34.8
SEGI_17381 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 2.7e-79 300.4 611 32.9
Psat1g166240 Pisum sativum HOM05D002338 ORTHO05D006102 5.1e-78 296.2 327 48.9
HPP92_006302 Vanilla planifolia HOM05D002338 ORTHO05D006102 4.8e-76 289.7 425 43.3
HanXRQChr16g0517751 Helianthus annuus HOM05D002338 ORTHO05D006102 2.2e-73 280.8 290 50.7
TAR627G0524 Trochodendron aralioides HOM05D002338 ORTHO05D006102 1.4e-70 271.6 225 59.1
HanXRQChr16g0518151 Helianthus annuus HOM05D002338 ORTHO05D006102 1.2e-63 248.4 341 45.5
Pp3c3_11130 Physcomitrium patens HOM05D002338 ORTHO05D006102 5.0e-57 226.5 568 31.3
Zm00001eb175250 Zea mays HOM05D002338 ORTHO05D006102 8.5e-57 225.7 579 30.1
BcaNung03635 Brassica carinata HOM05D002338 ORTHO05D006102 1.3e-44 185.3 199 44.7
C03p80710 Brassica napus HOM05D002338 ORTHO05D006102 2.2e-44 184.5 304 37.5
Mapoly0022s0109 Marchantia polymorpha HOM05D002338 ORTHO05D006102 4.8e-44 183.3 578 27.5
BcaC01g00499 Brassica carinata HOM05D002338 ORTHO05D006102 6.3e-44 183.0 398 30.9
AagrBONN_evm.TU.Sc2ySwM_228.3636 Anthoceros agrestis HOM05D002338 ORTHO05D006102 4.1e-43 180.3 551 27.6
SMO137G0058 Selaginella moellendorffii HOM05D002338 ORTHO05D006102 4.1e-35 153.7 322 31.4
Psat6g197040 Pisum sativum HOM05D002338 ORTHO05D006102 3.8e-33 147.1 211 37.9
BolC3t20316H Brassica oleracea HOM05D002338 ORTHO05D006102 8.0e-31 139.4 123 57.7
FAN05G0140 Fragaria x ananassa HOM05D002338 ORTHO05D006102 1.2e-26 125.6 198 40.4
Atru.chr10.1674 Acer truncatum HOM05D002338 ORTHO05D006102 3.5e-26 124.0 107 54.2
FAN05G0862 Fragaria x ananassa HOM05D002338 ORTHO05D006102 4.6e-26 123.6 198 39.9
FvH4_3g07850 Fragaria vesca HOM05D009570 ORTHO05D009451 1.5e-24 118.6 95 54.7
BcaNung03636 Brassica carinata HOM05D002338 ORTHO05D006102 1.0e-22 112.5 104 49.0
TAR627G0992 Trochodendron aralioides HOM05D002338 ORTHO05D006102 3.1e-22 110.9 148 41.9
Os08g0532500 Oryza sativa ssp. japonica HOM05D002338 ORTHO05D006102 2.9e-20 104.4 243 31.3
FAN14G0023 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.4e-19 101.3 157 42.7
SEGI_36544 Sequoiadendron giganteum HOM05D002338 ORTHO05D006102 1.6e-18 98.6 201 32.3
Solyc05g023840.1 Solanum lycopersicum HOM05D002338 ORTHO05D006102 4.6e-18 97.1 114 40.4
FAN02G2027 Fragaria x ananassa HOM05D002338 ORTHO05D006102 2.3e-17 94.7 123 43.9
BcaNung03637 Brassica carinata HOM05D002338 ORTHO05D006102 3.9e-17 94.0 211 31.3
FAN06G1043 Fragaria x ananassa HOM05D002338 ORTHO05D006102 5.0e-17 93.6 89 48.3
FAN10G3983 Fragaria x ananassa HOM05D002338 ORTHO05D006102 9.8e-13 79.3 60 55.0
Sc05g0007150 Simmondsia chinensis HOM05D002338 ORTHO05D006102 1.3e-12 79.0 69 58.0
Actinidia16798 Actinidia chinensis HOM05D002338 ORTHO05D006102 4.1e-11 73.9 158 34.8
TPR.G39999 Trifolium pratense HOM05D002338 ORTHO05D006102 1.6e-07 62.0 55 47.3
Atru.chr2.1532 Acer truncatum HOM05D002702 ORTHO05D003416 3.6e-07 60.8 267 20.6
CBR_g34074 Chara braunii HOM05D000019 ORTHO05D000002 4.7e-07 60.5 107 31.8
ATR0794G076 Amborella trichopoda HOM05D002338 ORTHO05D006102 8.1e-07 59.7 65 41.5
FAN14G1453 Fragaria x ananassa HOM05D002338 ORTHO05D006102 8.1e-07 59.7 53 60.4
Atru.chr2.91 Acer truncatum HOM05D002702 ORTHO05D003416 1.1e-06 59.3 269 21.2
ATR0582G311 Amborella trichopoda HOM05D002338 ORTHO05D006102 2.3e-06 58.2 54 57.4


User provided reference genes

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