Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.4G044800 Prunus persica HOM05D005098 ORTHO05D006646 4.3e-256 887.5 450 100.0
MD05G1314300 Malus domestica HOM05D005098 ORTHO05D006646 7.6e-237 823.5 456 92.3
MD10G1295600 Malus domestica HOM05D005098 ORTHO05D006646 5.9e-229 797.3 485 85.6
RcHm_v2.0_Chr5g0008121 Rosa chinensis HOM05D005098 ORTHO05D006646 2.3e-225 785.4 454 86.8
FvH4_3g09430 Fragaria vesca HOM05D005098 ORTHO05D006646 9.7e-224 780.0 454 85.9
QL05p039825 Quercus lobata HOM05D005098 ORTHO05D006646 1.8e-217 759.2 469 81.4
TAR627G0710 Trochodendron aralioides HOM05D005098 ORTHO05D006646 1.6e-213 746.1 456 82.5
CiPaw.09G058200 Carya illinoinensis HOM05D005098 ORTHO05D006646 3.5e-213 745.0 454 82.8
CANSAT35G1139 Cannabis sativa HOM05D005098 ORTHO05D006646 5.9e-213 744.2 456 81.8
CsaV3_6G050060 Cucumis sativus L. HOM05D005098 ORTHO05D006646 2.1e-210 735.7 454 81.1
Eucgr.E03323 Eucalyptus grandis HOM05D005098 ORTHO05D006646 2.3e-209 732.3 456 81.1
Eucgr.E03123 Eucalyptus grandis HOM05D005098 ORTHO05D006646 1.2e-208 729.9 458 81.2
Lalb_Chr16g0383691 Lupinus albus HOM05D005098 ORTHO05D006646 1.5e-208 729.6 454 80.2
Manes.17G044000 Manihot esculenta HOM05D005098 ORTHO05D006646 2.6e-208 728.8 454 81.1
TWI38G1357 Tripterygium wilfordii HOM05D005098 ORTHO05D006646 5.7e-208 727.6 454 81.1
Actinidia07581 Actinidia chinensis HOM05D005098 ORTHO05D006646 8.2e-207 723.8 454 79.7
VMungo0647G1277 Vigna mungo HOM05D005098 ORTHO05D006646 5.3e-206 721.1 454 79.7
arahy.Tifrunner.gnm1.ann1.Q8E5AY Arachis hypogaea HOM05D005098 ORTHO05D006646 1.6e-205 719.5 454 78.9
CSS0027379 Camellia sinensis var. sinensis HOM05D005098 ORTHO05D006646 2.0e-205 719.2 457 79.6
Atru.chr10.1909 Acer truncatum HOM05D005098 ORTHO05D006646 5.0e-204 714.5 453 79.5
Nn1g06591 Nelumbo nucifera HOM05D005098 ORTHO05D006646 5.0e-204 714.5 456 79.2
Glyma.07G195500 Glycine max HOM05D005098 ORTHO05D006646 9.4e-203 710.3 454 78.4
Solyc02g078440.3 Solanum lycopersicum HOM05D005098 ORTHO05D006646 1.2e-202 709.9 457 77.2
Sopen02g023290 Solanum pennellii HOM05D005098 ORTHO05D006646 1.2e-202 709.9 457 77.2
PGR142G2026 Punica granatum HOM05D005098 ORTHO05D006646 3.6e-202 708.4 454 78.4
Lj4g0017402 Lotus japonicus HOM05D005098 ORTHO05D006646 6.1e-202 707.6 454 78.6
Lj7A690T49 Lonicera japonica HOM05D005098 ORTHO05D006646 3.0e-201 705.3 490 73.7
HanXRQChr17g0560221 Helianthus annuus HOM05D005098 ORTHO05D006646 5.2e-201 704.5 455 77.6
Glyma.13G180800 Glycine max HOM05D005098 ORTHO05D006646 6.8e-201 704.1 454 78.2
MSTRG.2567 Avicennia marina HOM05D005098 ORTHO05D006646 1.2e-200 703.4 457 76.6
THA.LOC104814462 Tarenaya hassleriana HOM05D005098 ORTHO05D006646 2.0e-200 702.6 456 77.4
RhsimUnG0054100 Rhododendron simsii HOM05D005098 ORTHO05D006646 7.5e-200 700.7 460 78.0
Gorai.011G026700 Gossypium raimondii HOM05D005098 ORTHO05D006646 2.2e-199 699.1 456 77.6
Medtr4g088935 Medicago truncatula HOM05D005098 ORTHO05D006646 2.2e-199 699.1 454 76.4
Medtr3g072660 Medicago truncatula HOM05D005098 ORTHO05D006646 2.8e-199 698.7 455 76.9
TPR.G12033 Trifolium pratense HOM05D005098 ORTHO05D006646 2.8e-199 698.7 454 77.1
Psat7g112680 Pisum sativum HOM05D005098 ORTHO05D006646 3.7e-199 698.4 454 76.7
Rhsim10G0081000 Rhododendron simsii HOM05D005098 ORTHO05D006646 8.3e-199 697.2 469 76.5
Migut.G00672 Erythranthe guttata HOM05D005098 ORTHO05D006646 3.1e-198 695.3 457 76.6
Potri.004G041600 Populus trichocarpa HOM05D005098 ORTHO05D006646 7.0e-198 694.1 454 77.5
Gohir.A10G024700 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.7e-197 692.2 462 76.4
PSO832G2562 Papaver somniferum HOM05D005098 ORTHO05D006646 1.7e-196 689.5 455 76.9
Aqoxy7G02591 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.9e-196 688.7 454 76.7
Sp7g17170 Schrenkiella parvula HOM05D005098 ORTHO05D006646 2.9e-196 688.7 456 76.5
AT4G17020 Arabidopsis thaliana HOM05D005098 ORTHO05D006646 3.8e-196 688.3 456 76.8
ECA234G2003 Erigeron canadensis HOM05D005098 ORTHO05D006646 5.0e-196 688.0 455 75.4
AL7G37700 Arabidopsis lyrata HOM05D005098 ORTHO05D006646 8.6e-196 687.2 456 76.8
Duzib235G1364 Durio zibethinus HOM05D005098 ORTHO05D006646 1.1e-195 686.8 450 77.8
Peaxi162Scf00736g00425 Petunia axillaris HOM05D005098 ORTHO05D006646 9.5e-195 683.7 449 75.7
BcaNung00134 Brassica carinata HOM05D005098 ORTHO05D006646 2.8e-194 682.2 456 75.7
CARHR223580 Cardamine hirsuta HOM05D005098 ORTHO05D006646 1.8e-193 679.5 456 75.2
Thhalv10025179m.g Eutrema salsugineum HOM05D005098 ORTHO05D006646 2.3e-193 679.1 456 75.2
PSO210G7403 Papaver somniferum HOM05D005098 ORTHO05D006646 2.3e-193 679.1 455 75.6
EL10Ac8g20363 Beta vulgaris HOM05D005098 ORTHO05D006646 3.0e-193 678.7 461 75.5
BcaC09g50435 Brassica carinata HOM05D005098 ORTHO05D006646 4.0e-193 678.3 454 75.8
BraA01t01956Z Brassica rapa HOM05D005098 ORTHO05D006646 1.5e-192 676.4 453 75.1
Aa31LG2G13100 Aethionema arabicum HOM05D005098 ORTHO05D006646 5.7e-192 674.5 456 74.8
CAN.G1164.12 Capsicum annuum HOM05D005098 ORTHO05D006646 7.5e-192 674.1 459 74.1
Cc01_g06430 Coffea canephora HOM05D005098 ORTHO05D006646 2.8e-191 672.2 458 73.4
HPP92_021892 Vanilla planifolia HOM05D005098 ORTHO05D006646 1.1e-190 670.2 454 74.0
Carub.0007s2440 Capsella rubella HOM05D005098 ORTHO05D006646 1.8e-190 669.5 456 74.8
Phvul.002G227900 Phaseolus vulgaris HOM05D005098 ORTHO05D006646 1.6e-189 666.4 448 75.7
A01p20290 Brassica napus HOM05D005098 ORTHO05D006646 2.0e-189 666.0 447 74.7
Haze_05744 Corylus avellana HOM05D005098 ORTHO05D006646 3.5e-189 665.2 439 77.9
Dinv40543 Davidia involucrata HOM05D005098 ORTHO05D006646 4.5e-189 664.8 484 72.3
C01p25440 Brassica napus HOM05D005098 ORTHO05D006646 1.0e-188 663.7 478 71.8
Oeu017728.1 Olea europaea HOM05D005098 ORTHO05D006646 2.1e-186 656.0 491 69.0
Os04g0680000 Oryza sativa ssp. japonica HOM05D005098 ORTHO05D006646 8.0e-186 654.1 454 71.1
Thecc.06G189900 Theobroma cacao HOM05D005098 ORTHO05D006646 1.0e-185 653.7 417 79.9
FAN21G0237 Fragaria x ananassa HOM05D005098 ORTHO05D006646 3.0e-185 652.1 590 62.4
ATR0680G123 Amborella trichopoda HOM05D005098 ORTHO05D006646 4.0e-185 651.7 472 69.1
Duzib209G0004 Durio zibethinus HOM05D005098 ORTHO05D006646 8.9e-185 650.6 444 75.5
Zm00001eb065950 Zea mays HOM05D005098 ORTHO05D006646 1.4e-182 643.3 454 70.5
Sabra04G0025700 Salix brachista HOM05D005098 ORTHO05D006646 1.9e-182 642.9 457 73.3
SGA_v2.0_scaffold111G31518 Striga asiatica HOM05D005098 ORTHO05D006646 4.6e-181 638.3 476 70.4
Nitab4.5_0002158g0040 Nicotiana tabacum HOM05D005098 ORTHO05D006646 6.0e-181 637.9 464 70.5
FAN11G1498 Fragaria x ananassa HOM05D005098 ORTHO05D006646 9.5e-179 630.6 494 69.4
COL.COLO4_31494 Corchorus olitorius HOM05D005098 ORTHO05D006646 8.0e-178 627.5 410 77.6
SalBow3G0169 Salvia bowleyana HOM05D005098 ORTHO05D006646 1.8e-177 626.3 477 67.7
unitig_736.g22566 Utricularia gibba HOM05D005098 ORTHO05D006646 1.3e-175 620.2 470 68.3
ClCG01G022890 Citrullus lanatus HOM05D005098 ORTHO05D006646 3.2e-174 615.5 448 71.2
MBI18_g17000_MAGBIO Magnolia biondii HOM05D005098 ORTHO05D006646 2.1e-173 612.8 454 70.3
Nitab4.5_0005954g0050 Nicotiana tabacum HOM05D005098 ORTHO05D006646 4.6e-173 611.7 459 69.9
Sed0003361 Sechium edule HOM05D005098 ORTHO05D006646 1.7e-172 609.8 355 85.9
Hund21233 Selenicereus undatus HOM05D005098 ORTHO05D006646 1.7e-167 593.2 552 60.1
BolC1t02496H Brassica oleracea HOM05D005098 ORTHO05D006646 1.9e-166 589.7 384 77.6
DCAR_028090 Daucus carota HOM05D005098 ORTHO05D006646 5.4e-166 588.2 400 73.8
Lsat_1_v5_gn_4_52761 Lactuca sativa HOM05D005098 ORTHO05D006646 2.7e-165 585.9 449 67.7
vmacro15900 Vaccinium macrocarpon HOM05D005098 ORTHO05D006646 3.5e-165 585.5 497 63.6
Cpa.g.sc27.58 Carica papaya HOM05D005098 ORTHO05D006646 6.0e-165 584.7 456 69.5
Ah.09g237250 Amaranthus hybridus HOM05D005098 ORTHO05D006646 8.1e-162 574.3 400 73.0
Nitab4.5_0000119g0020 Nicotiana tabacum HOM05D005098 ORTHO05D006646 1.5e-160 570.1 517 59.4
Duzib192G0974 Durio zibethinus HOM05D005098 ORTHO05D006646 2.3e-156 556.2 450 66.2
AUR62014801 Chenopodium quinoa HOM05D005098 ORTHO05D006646 2.2e-151 539.7 482 61.4
Sc17g0006240 Simmondsia chinensis HOM05D005098 ORTHO05D006646 8.4e-151 537.7 325 81.2
Gohir.D10G025400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.3e-148 529.6 343 77.6
CDE01G0218 Ceratophyllum demersum HOM05D005098 ORTHO05D006646 7.6e-144 514.6 431 63.1
Mapoly0047s0044 Marchantia polymorpha HOM05D005098 ORTHO05D006646 2.4e-137 493.0 458 52.8
Dinv07544 Davidia involucrata HOM05D005098 ORTHO05D006646 6.9e-137 491.5 296 83.4
Ciclev10009035m.g Citrus clementina HOM05D005098 ORTHO05D006646 2.6e-128 463.0 296 77.0
AUR62016992 Chenopodium quinoa HOM05D005098 ORTHO05D006646 1.3e-127 460.7 413 61.3
Pp3c3_5470 Physcomitrium patens HOM05D005098 ORTHO05D006646 2.2e-127 459.9 458 50.7
SHI01874 Sapria himalayana HOM05D005098 ORTHO05D006646 1.2e-120 437.6 508 49.6
SMO271G0092 Selaginella moellendorffii HOM05D005098 ORTHO05D006646 1.4e-116 424.1 456 47.6
COL.COLO4_32259 Corchorus olitorius HOM05D005098 ORTHO05D006646 7.7e-112 408.3 268 77.6
Rhsim02G0128000 Rhododendron simsii HOM05D005098 ORTHO05D006646 1.2e-109 401.0 342 64.6
FAN16G0038 Fragaria x ananassa HOM05D005098 ORTHO05D006646 5.7e-107 392.1 276 73.2
CBR_g44575 Chara braunii HOM05D005098 ORTHO05D006646 2.8e-106 389.8 449 46.5
CBR_g45762 Chara braunii HOM05D005098 ORTHO05D006646 6.5e-103 378.6 449 43.7
Aqoxy3G01806 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 6.1e-101 372.1 230 80.4
Haze_06488 Corylus avellana HOM05D005098 ORTHO05D006646 6.7e-100 368.6 436 51.1
GSVIVG01002931001 Vitis vinifera HOM05D005098 ORTHO05D006646 4.2e-94 349.4 205 83.9
FAN16G1787 Fragaria x ananassa HOM05D005098 ORTHO05D006646 3.4e-83 313.2 186 84.4
GSVIVG01002018001 Vitis vinifera HOM05D005098 ORTHO05D006646 7.5e-75 285.4 261 61.7
MELO3C007290.2 Cucumis melo HOM05D005098 ORTHO05D006646 6.8e-68 262.3 240 58.8
Ca_18535_v3 Cicer arietinum L. HOM05D005098 ORTHO05D006646 1.5e-67 261.2 283 53.4
arahy.Tifrunner.gnm1.ann1.MC3R28 Arachis hypogaea HOM05D005098 ORTHO05D006646 4.3e-62 243.0 325 47.4
PGSC0003DMG400022441 Solanum tuberosum HOM05D005098 ORTHO05D006646 4.0e-60 236.5 148 76.4
arahy.Tifrunner.gnm1.ann1.AUX6FS Arachis hypogaea HOM05D005098 ORTHO05D006646 1.2e-59 235.0 177 68.4
Cfa026287 Carpinus fangiana HOM05D003704 ORTHO05D005892 7.1e-57 225.7 466 33.0
AagrBONN_evm.TU.Sc2ySwM_117.270 Anthoceros agrestis HOM05D005098 ORTHO05D006646 2.1e-56 224.2 229 49.3
MCO15G365 Micromonas commoda HOM05D005098 ORTHO05D006646 1.2e-53 214.9 463 30.7
PRCOL_00001787 Prasinoderma coloniale HOM05D005098 ORTHO05D006646 1.1e-52 211.8 527 30.0
FAN11G1346 Fragaria x ananassa HOM05D005098 ORTHO05D006646 1.4e-52 211.5 130 80.0
Cre09.g403300 Chlamydomonas reinhardtii HOM05D005098 ORTHO05D006646 1.2e-48 198.4 556 28.1
Cc01_g06850 Coffea canephora HOM05D005098 ORTHO05D006646 1.9e-33 147.9 111 69.4
SEGI_32979 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.9e-33 147.9 118 64.4
Aqoxy3G01794 Aquilegia oxysepala HOM05D005098 ORTHO05D006646 2.6e-27 127.5 94 66.0
SEGI_14594 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.9e-26 123.2 93 61.3
SEGI_34698 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.9e-26 123.2 93 61.3
Gorai.013G150200 Gossypium raimondii HOM05D003836 ORTHO05D004556 4.2e-25 120.2 70 84.3
Gohir.D06G130832 Gossypium hirsutum HOM05D005098 ORTHO05D004556 4.6e-24 116.7 69 82.6
Gohir.D09G038350 Gossypium hirsutum HOM05D005098 ORTHO05D006646 1.8e-23 114.8 69 81.2
SEGI_19813 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 2.4e-20 104.4 93 54.8
SEGI_13032 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.5e-19 100.1 84 57.1
Glyma.13G152508 Glycine max HOM05D005098 ORTHO05D046693 5.8e-19 99.8 175 42.9
Gorai.006G108000 Gossypium raimondii HOM05D005098 ORTHO05D006646 7.1e-17 92.8 58 79.3
Rhsim06G0079100 Rhododendron simsii HOM05D005098 ORTHO05D006646 3.9e-15 87.0 52 78.8
COL.COLO4_32260 Corchorus olitorius HOM05D005098 ORTHO05D006646 1.1e-14 85.5 67 64.2
FAN08G2831 Fragaria x ananassa HOM05D005098 ORTHO05D031290 1.5e-14 85.1 70 68.6
FvH4_5g20991 Fragaria vesca HOM05D005098 ORTHO05D031290 9.6e-14 82.4 103 48.5
Gohir.A04G102400 Gossypium hirsutum HOM05D005098 ORTHO05D006646 2.1e-13 81.3 51 76.5
SEGI_03475 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 4.8e-13 80.1 58 58.6
Cc01_g06820 Coffea canephora HOM05D005098 ORTHO05D006646 7.6e-11 72.8 60 56.7
Aqoxy3G01796 Aquilegia oxysepala HOM05D005098 ORTHO05D031290 1.3e-10 72.0 57 57.9
SEGI_28984 Sequoiadendron giganteum HOM05D005098 ORTHO05D006646 1.8e-07 61.6 38 73.7
Glyma.13G152440 Glycine max HOM05D005098 ORTHO05D046693 1.5e-06 58.5 38 78.9


User provided reference genes

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