Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G259400 Prunus persica HOM05D004116 ORTHO05D004734 0.0e+00 2011.1 1029 100.0
MD17G1056200 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1882.5 1033 93.5
MD09G1060800 Malus domestica HOM05D004116 ORTHO05D004734 0.0e+00 1850.9 1052 91.3
Haze_14475 Corylus avellana HOM05D004116 ORTHO05D004734 0.0e+00 1761.5 1045 86.3
Dinv11490 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1742.6 1042 85.9
Dinv33806 Davidia involucrata HOM05D004116 ORTHO05D004734 0.0e+00 1727.6 1036 85.0
Hma1.2p1_0037F.1_g023840 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 0.0e+00 1719.9 1038 85.4
ClCG10G015430 Citrullus lanatus HOM05D004116 ORTHO05D004734 0.0e+00 1718.7 1042 84.5
QL02p039609 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1710.7 1039 85.2
QL02p039361 Quercus lobata HOM05D004116 ORTHO05D004734 0.0e+00 1709.9 1039 85.2
RcHm_v2.0_Chr2g0166651 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1709.1 1045 85.0
Atru.chr8.371 Acer truncatum HOM05D004116 ORTHO05D004734 0.0e+00 1708.3 1045 83.6
GSVIVG01011484001 Vitis vinifera HOM05D004116 ORTHO05D004734 0.0e+00 1708.0 1044 84.7
MELO3C009839.2 Cucumis melo HOM05D004116 ORTHO05D004734 0.0e+00 1707.6 1044 84.1
CiPaw.03G091800 Carya illinoinensis HOM05D004116 ORTHO05D004734 0.0e+00 1706.4 1044 83.9
CsaV3_3G041070 Cucumis sativus L. HOM05D004116 ORTHO05D004734 0.0e+00 1704.1 1044 84.0
Lj4C115G25 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1704.1 1037 83.9
Manes.01G099400 Manihot esculenta HOM05D004116 ORTHO05D004734 0.0e+00 1697.2 1031 84.1
Duzib264G1228 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1695.2 1049 83.2
CAN.G206.195 Capsicum annuum HOM05D004116 ORTHO05D004734 0.0e+00 1692.6 1041 83.1
Gorai.006G012900 Gossypium raimondii HOM05D004116 ORTHO05D004734 0.0e+00 1690.6 1054 82.6
Gohir.D09G011100 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1689.1 1054 82.6
Actinidia26244 Actinidia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1686.8 1015 84.5
TWI60G1537 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1686.4 1044 82.6
PGSC0003DMG400001440 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1682.5 1041 82.3
Sopen02g033270 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1682.2 1041 82.1
Nitab4.5_0000565g0080 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1681.8 1075 80.9
vmacro18164 Vaccinium macrocarpon HOM05D004116 ORTHO05D004734 0.0e+00 1680.6 1014 84.6
Cfa007620 Carpinus fangiana HOM05D004116 ORTHO05D004734 0.0e+00 1672.1 1045 82.7
Thecc.04G090300 Theobroma cacao HOM05D004116 ORTHO05D004734 0.0e+00 1670.2 1048 82.1
DCAR_011063 Daucus carota HOM05D004116 ORTHO05D004734 0.0e+00 1669.4 1035 81.9
TWI34G1118 Tripterygium wilfordii HOM05D004116 ORTHO05D004734 0.0e+00 1669.4 1044 82.0
PGR004G0109 Punica granatum HOM05D004116 ORTHO05D004734 0.0e+00 1669.1 1035 81.8
FAN09G3106 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1666.7 1045 83.2
Sed0005067 Sechium edule HOM05D004116 ORTHO05D004734 0.0e+00 1666.7 1038 82.7
Ciclev10010958m.g Citrus clementina HOM05D004116 ORTHO05D004734 0.0e+00 1664.8 1051 81.4
TAR629G1084 Trochodendron aralioides HOM05D004116 ORTHO05D004734 0.0e+00 1663.7 1042 82.1
Cc07_g03830 Coffea canephora HOM05D004116 ORTHO05D004734 0.0e+00 1663.3 1041 81.6
Duzib147G0424 Durio zibethinus HOM05D004116 ORTHO05D004734 0.0e+00 1662.5 1046 81.7
FvH4_6g47550 Fragaria vesca HOM05D004116 ORTHO05D004734 0.0e+00 1659.0 1044 83.0
FAN14G3940 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1657.9 1044 82.9
CSS0030715 Camellia sinensis var. sinensis HOM05D004116 ORTHO05D004734 0.0e+00 1653.3 1015 83.1
arahy.Tifrunner.gnm1.ann1.M1DWNQ Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1652.9 1058 80.2
Sc10g0003320 Simmondsia chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1652.9 1053 80.8
Peaxi162Scf00166g00825 Petunia axillaris HOM05D004116 ORTHO05D004734 0.0e+00 1648.6 1042 80.6
FAN02G1010 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1647.1 1087 79.9
MSTRG.23904 Avicennia marina HOM05D004116 ORTHO05D004734 0.0e+00 1642.9 1043 80.2
Lju41A7G39 Lonicera japonica HOM05D004116 ORTHO05D004734 0.0e+00 1640.6 1055 80.8
Oeu045355.1 Olea europaea HOM05D004116 ORTHO05D004734 0.0e+00 1640.6 1037 79.9
Eucgr.I01989 Eucalyptus grandis HOM05D004116 ORTHO05D004734 0.0e+00 1639.8 1032 81.0
FAN05G0837 Fragaria x ananassa HOM05D004116 ORTHO05D004734 0.0e+00 1636.7 1085 79.7
TPR.G26216 Trifolium pratense HOM05D004116 ORTHO05D004734 0.0e+00 1634.4 1043 80.2
Ca_04866_v3 Cicer arietinum L. HOM05D004116 ORTHO05D004734 0.0e+00 1630.9 1037 81.0
Lalb_Chr21g0318471 Lupinus albus HOM05D004116 ORTHO05D004734 0.0e+00 1630.2 1047 79.9
Migut.H00657 Erythranthe guttata HOM05D004116 ORTHO05D004734 0.0e+00 1627.1 1042 79.1
Rhsim08G0073200 Rhododendron simsii HOM05D004116 ORTHO05D004734 0.0e+00 1625.1 1064 79.1
Nitab4.5_0008573g0070 Nicotiana tabacum HOM05D004116 ORTHO05D004734 0.0e+00 1623.2 1077 78.6
Glyma.19G027200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1620.1 1044 80.3
SGA_v2.0_scaffold4G02415 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1619.8 1043 79.5
VMungo0464G1725 Vigna mungo HOM05D004116 ORTHO05D004734 0.0e+00 1618.2 1049 79.6
Glyma.13G059200 Glycine max HOM05D004116 ORTHO05D004734 0.0e+00 1615.1 1044 79.9
COL.COLO4_07430 Corchorus olitorius HOM05D004116 ORTHO05D004734 0.0e+00 1613.6 1044 79.9
CANSAT64G2358 Cannabis sativa HOM05D004116 ORTHO05D004734 0.0e+00 1611.3 1040 80.2
Phvul.004G033100 Phaseolus vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1609.7 1047 79.2
SGA_v2.0_scaffold413G51160 Striga asiatica HOM05D004116 ORTHO05D004734 0.0e+00 1609.3 1032 79.6
THA.LOC104822346 Tarenaya hassleriana HOM05D004116 ORTHO05D004734 0.0e+00 1608.2 1042 78.8
Potri.017G089600 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1607.8 1032 80.3
Lj2g0025037 Lotus japonicus HOM05D004116 ORTHO05D004734 0.0e+00 1607.4 1047 79.6
Gohir.A09G012200 Gossypium hirsutum HOM05D004116 ORTHO05D004734 0.0e+00 1602.8 1048 79.5
Carub.0006s1357 Capsella rubella HOM05D004116 ORTHO05D004734 0.0e+00 1597.4 1044 77.6
Potri.004G121200 Populus trichocarpa HOM05D004116 ORTHO05D004734 0.0e+00 1597.0 1033 80.1
Aa31LG11G14160 Aethionema arabicum HOM05D004116 ORTHO05D004734 0.0e+00 1595.5 1042 78.0
Medtr6g013690 Medicago truncatula HOM05D004116 ORTHO05D004734 0.0e+00 1594.7 1047 78.6
AT5G15400 Arabidopsis thaliana HOM05D004116 ORTHO05D004734 0.0e+00 1594.3 1044 77.8
CARHR197910 Cardamine hirsuta HOM05D004116 ORTHO05D004734 0.0e+00 1594.3 1043 78.4
AL6G26260 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 0.0e+00 1592.4 1044 77.6
arahy.Tifrunner.gnm1.ann1.JWLU7F Arachis hypogaea HOM05D004116 ORTHO05D004734 0.0e+00 1587.8 1047 78.3
BraA02t05272Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1587.0 1041 77.2
HanXRQChr09g0264141 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1585.9 1026 79.8
A02p03010 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1579.3 1043 76.8
Sp6g28690 Schrenkiella parvula HOM05D004116 ORTHO05D004734 0.0e+00 1575.8 1044 77.1
Nn4g23336 Nelumbo nucifera HOM05D004116 ORTHO05D004734 0.0e+00 1574.3 1032 78.5
Thhalv10012542m.g Eutrema salsugineum HOM05D004116 ORTHO05D004734 0.0e+00 1571.6 1045 77.3
HanXRQChr15g0488441 Helianthus annuus HOM05D004116 ORTHO05D004734 0.0e+00 1568.1 1023 78.8
Lsat_1_v5_gn_4_170201 Lactuca sativa HOM05D004116 ORTHO05D004734 0.0e+00 1567.0 1032 78.7
A10p23490 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1564.3 1048 76.2
BraA10t44416Z Brassica rapa HOM05D004116 ORTHO05D004734 0.0e+00 1564.3 1048 76.2
Sabra17G0078900 Salix brachista HOM05D004116 ORTHO05D004734 0.0e+00 1562.7 1049 77.2
PGSC0003DMG400007132 Solanum tuberosum HOM05D004116 ORTHO05D004734 0.0e+00 1555.8 1019 78.1
C02p07680 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1551.6 1049 75.7
BolC9t59011H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1550.0 1046 76.5
BolC2t06699H Brassica oleracea HOM05D004116 ORTHO05D004734 0.0e+00 1549.6 1049 75.6
C09p61720 Brassica napus HOM05D004116 ORTHO05D004734 0.0e+00 1545.0 1046 76.1
BcaC03g13414 Brassica carinata HOM05D004116 ORTHO05D004734 0.0e+00 1534.2 1048 75.2
EL10Ac2g03047 Beta vulgaris HOM05D004116 ORTHO05D004734 0.0e+00 1528.8 1144 70.8
Aqoxy3G03559 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1521.1 1018 75.7
PSO063G3309 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1510.7 1042 74.6
PSO013G0369 Papaver somniferum HOM05D004116 ORTHO05D004734 0.0e+00 1504.6 1044 74.2
MBI19_g32361_MAGBIO Magnolia biondii HOM05D004116 ORTHO05D004734 0.0e+00 1500.3 1052 74.5
Sopen06g031210 Solanum pennellii HOM05D004116 ORTHO05D004734 0.0e+00 1500.3 1022 75.3
Aqoxy3G01362 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 0.0e+00 1455.3 1027 72.3
Cpa.g.sc14.139 Carica papaya HOM05D004116 ORTHO05D004734 0.0e+00 1448.0 1041 74.3
AUR62018140 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1424.1 1035 72.3
RcHm_v2.0_Chr5g0047221 Rosa chinensis HOM05D004116 ORTHO05D004734 0.0e+00 1410.2 1004 74.1
ECA232G0495 Erigeron canadensis HOM05D004116 ORTHO05D004734 0.0e+00 1386.3 916 77.9
unitig_744.g24002 Utricularia gibba HOM05D004116 ORTHO05D004734 0.0e+00 1372.5 1040 69.9
Solyc06g074770.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 0.0e+00 1371.3 950 74.5
AUR62034478 Chenopodium quinoa HOM05D004116 ORTHO05D004734 0.0e+00 1342.0 1018 70.0
SHI16441 Sapria himalayana HOM05D004116 ORTHO05D004734 0.0e+00 1337.4 1024 68.5
HPP92_023626 Vanilla planifolia HOM05D004116 ORTHO05D004734 0.0e+00 1318.9 957 70.0
Os03g0427900 Oryza sativa ssp. japonica HOM05D004116 ORTHO05D004734 0.0e+00 1288.1 1026 64.8
ATR0111G012 Amborella trichopoda HOM05D004116 ORTHO05D004734 0.0e+00 1227.6 837 75.1
Mapoly0052s0078 Marchantia polymorpha HOM05D004116 ORTHO05D004734 0.0e+00 1134.4 1019 58.5
Ah.12g062550 Amaranthus hybridus HOM05D004116 ORTHO05D004734 0.0e+00 1112.1 753 77.0
AagrBONN_evm.TU.Sc2ySwM_340.219 Anthoceros agrestis HOM05D004116 ORTHO05D004734 0.0e+00 1098.6 1014 58.5
FAN11G2920 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.5e-309 1066.2 1001 60.0
SMO356G0406 Selaginella moellendorffii HOM05D004116 ORTHO05D004734 5.9e-309 1064.3 1015 55.2
Pp3c15_20630 Physcomitrium patens HOM05D004116 ORTHO05D004734 1.6e-306 1056.2 1028 55.2
Hma1.2p1_0604F.1_g187770 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.3e-300 1036.6 625 86.1
Zm00001eb393280 Zea mays HOM05D004116 ORTHO05D004734 4.4e-296 1021.5 705 72.1
Zm00001eb020370 Zea mays HOM05D004116 ORTHO05D004734 1.2e-293 1013.4 706 71.5
FAN25G2854 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.1e-286 988.4 954 59.7
PSO144G0086 Papaver somniferum HOM05D004116 ORTHO05D004734 5.0e-276 954.9 1025 53.0
PSO325G0009 Papaver somniferum HOM05D004116 ORTHO05D004734 3.0e-268 929.1 1018 53.5
PSO170G0544 Papaver somniferum HOM05D004116 ORTHO05D004734 8.6e-268 927.5 1031 53.2
CDE04G3780 Ceratophyllum demersum HOM05D004116 ORTHO05D004734 1.1e-267 927.2 612 75.7
Aqoxy3G00661 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 5.1e-244 848.6 560 77.5
Psat1g069120 Pisum sativum HOM05D004116 ORTHO05D004734 9.6e-243 844.3 479 89.1
Solyc02g088550.4 Solanum lycopersicum HOM05D004116 ORTHO05D004734 4.8e-226 788.9 446 89.2
PSO017G4845 Papaver somniferum HOM05D004116 ORTHO05D004734 3.3e-203 713.0 1029 44.5
FvH4_3g25920 Fragaria vesca HOM05D004116 ORTHO05D004734 6.3e-194 682.2 437 79.2
PSO144G0082 Papaver somniferum HOM05D004116 ORTHO05D004734 2.2e-186 657.1 1007 42.5
BcaC04g24243 Brassica carinata HOM05D004116 ORTHO05D004734 7.2e-182 642.1 387 84.2
CDE07G1255 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 7.2e-182 642.1 399 79.7
FAN16G3124 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.8e-177 627.5 481 69.2
Psat1g069040 Pisum sativum HOM05D004116 ORTHO05D004734 1.4e-172 611.3 454 69.4
CBR_g12108 Chara braunii HOM05D004116 ORTHO05D004734 5.7e-171 605.9 520 59.4
PRCOL_00002499 Prasinoderma coloniale HOM05D004116 ORTHO05D004734 4.3e-166 589.7 1040 37.4
Aqoxy3G00662 Aquilegia oxysepala HOM05D004116 ORTHO05D004734 8.3e-154 548.9 413 66.8
FvH4_3g25930 Fragaria vesca HOM05D004116 ORTHO05D004734 3.6e-149 533.5 555 56.9
BcaNung03312 Brassica carinata HOM05D004116 ORTHO05D004734 6.4e-146 522.7 499 59.1
FAN17G0761 Fragaria x ananassa HOM05D004116 ORTHO05D004734 4.3e-142 510.0 373 71.0
FAN09G1300 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-141 507.7 367 71.7
FAN09G4205 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.1e-141 507.7 367 71.7
FAN21G0296 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.8e-140 502.7 372 72.0
SEGI_13711 Sequoiadendron giganteum HOM05D004116 ORTHO05D004734 9.2e-137 492.3 322 75.2
PSO761G0054 Papaver somniferum HOM05D004116 ORTHO05D004734 7.8e-128 462.6 656 43.1
PSO384G2573 Papaver somniferum HOM05D004116 ORTHO05D004734 1.2e-123 448.7 586 46.1
Cre09.g398350 Chlamydomonas reinhardtii HOM05D004116 ORTHO05D004734 8.4e-122 442.6 1069 32.0
QL02p039616 Quercus lobata HOM05D004116 ORTHO05D004734 1.2e-112 412.1 282 75.9
Ah.12g062560 Amaranthus hybridus HOM05D004116 ORTHO05D004734 2.8e-101 374.4 290 67.2
Lsat_1_v5_gn_8_41201 Lactuca sativa HOM05D004116 ORTHO05D004734 4.5e-91 340.5 194 88.1
FAN12G4053 Fragaria x ananassa HOM05D004116 ORTHO05D004734 1.9e-89 335.1 508 43.7
Actinidia17574 Actinidia chinensis HOM05D004116 ORTHO05D004734 5.5e-89 333.6 279 64.5
CBR_g12111 Chara braunii HOM05D004116 ORTHO05D004734 2.1e-80 305.1 507 37.5
Hma1.2p1_1813F.1_g303850 Hydrangea macrophylla HOM05D004116 ORTHO05D004734 1.7e-77 295.4 185 82.2
Lsat_1_v5_gn_8_41221 Lactuca sativa HOM05D004116 ORTHO05D004734 7.7e-75 286.6 394 45.9
FAN21G1378 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.8e-74 284.3 228 68.9
PSO478G4129 Papaver somniferum HOM05D004116 ORTHO05D004734 9.7e-70 269.6 415 44.8
FAN16G0481 Fragaria x ananassa HOM05D004116 ORTHO05D004734 2.4e-68 265.0 221 68.3
Actinidia17575 Actinidia chinensis HOM05D004116 ORTHO05D004734 1.5e-62 245.7 135 87.4
FAN21G1132 Fragaria x ananassa HOM05D004116 ORTHO05D004734 3.1e-60 238.0 298 49.3
Lsat_1_v5_gn_0_45261 Lactuca sativa HOM05D004116 ORTHO05D004734 1.6e-51 209.1 162 71.0
Oeu034757.1 Olea europaea HOM05D004116 ORTHO05D004734 5.0e-50 204.1 135 73.3
Actinidia17576 Actinidia chinensis HOM05D000100 ORTHO05D004702 1.6e-48 199.1 122 82.0
Psat1g069080 Pisum sativum HOM05D004116 ORTHO05D004734 6.1e-48 197.2 358 40.5
MCO05G368 Micromonas commoda HOM05D004116 ORTHO05D004734 1.2e-43 183.0 191 48.7
FAN16G0041 Fragaria x ananassa HOM05D004116 ORTHO05D004734 6.4e-37 160.6 123 69.9
PSO675G1667 Papaver somniferum HOM05D004116 ORTHO05D004734 7.0e-36 157.1 172 54.7
TAR622G0429 Trochodendron aralioides HOM05D004116 ORTHO05D004734 1.3e-34 152.9 253 41.5
SalBow6G1256 Salvia bowleyana HOM05D003831 ORTHO05D004440 5.6e-33 147.5 203 43.8
CDE04G3166 Ceratophyllum demersum HOM05D006464 ORTHO05D007923 2.9e-29 135.2 91 73.6
CAN.G111.24 Capsicum annuum HOM05D004116 ORTHO05D004734 1.6e-27 129.4 255 36.5
AL1G40200 Arabidopsis lyrata HOM05D004116 ORTHO05D004734 4.3e-25 121.3 92 66.3
Hund13173 Selenicereus undatus HOM05D000214 ORTHO05D000131 2.6e-14 85.5 55 76.4
Lsat_1_v5_gn_1_20041 Lactuca sativa HOM05D004116 ORTHO05D004734 1.1e-12 80.1 64 65.6
Cre12.g519150 Chlamydomonas reinhardtii HOM05D004874 ORTHO05D006796 1.2e-11 76.6 72 47.2
Lsat_1_v5_gn_8_37500 Lactuca sativa HOM05D003233 ORTHO05D003694 1.0e-10 73.6 49 71.4
MBI19_g01203_MAGBIO Magnolia biondii HOM05D001745 ORTHO05D001772 6.6e-10 70.9 62 58.1
MCO16G187 Micromonas commoda HOM05D004874 ORTHO05D006796 8.7e-10 70.5 115 38.3


User provided reference genes

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