Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 8.7e-229 796.6 389 100.0
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 1.3e-216 756.1 389 92.8
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 5.4e-215 750.7 389 92.3
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 1.7e-200 702.6 389 88.9
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 6.5e-200 700.7 392 87.2
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.4e-199 699.5 392 87.0
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.9e-199 699.1 393 86.8
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 3.2e-199 698.4 392 87.0
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.6e-198 696.0 393 86.5
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.1e-186 656.8 359 88.3
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.4e-186 656.4 398 81.9
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 5.3e-186 654.4 388 83.5
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 9.1e-186 653.7 407 79.4
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 4.5e-185 651.4 397 81.1
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 7.7e-185 650.6 345 90.4
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 1.0e-184 650.2 398 81.4
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 1.0e-184 650.2 406 80.0
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.3e-184 649.8 395 81.5
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 1.3e-184 649.8 334 91.3
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 2.9e-184 648.7 354 87.9
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.4e-183 646.4 347 88.8
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 2.1e-182 642.5 396 79.3
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 2.7e-182 642.1 335 89.3
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 4.7e-182 641.3 357 85.7
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 6.1e-182 641.0 402 77.9
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 7.9e-182 640.6 344 88.7
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 7.9e-182 640.6 399 79.4
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 1.8e-181 639.4 345 88.7
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 1.8e-181 639.4 396 79.8
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 8.8e-181 637.1 394 78.7
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.1e-180 636.7 340 89.1
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 1.1e-180 636.7 347 86.7
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 2.6e-180 635.6 340 89.1
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 5.7e-180 634.4 346 87.9
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 5.7e-180 634.4 347 87.0
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 7.4e-180 634.0 399 78.7
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 1.3e-179 633.3 392 79.6
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 1.3e-179 633.3 393 78.6
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.3e-179 633.3 393 78.6
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 2.8e-179 632.1 347 86.2
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 2.8e-179 632.1 332 90.7
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 6.3e-179 630.9 346 87.3
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.1e-178 630.2 396 78.8
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.1e-178 630.2 406 77.1
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 1.4e-178 629.8 337 88.7
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 4.1e-178 628.2 378 79.9
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 4.1e-178 628.2 391 78.0
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 4.1e-178 628.2 410 78.3
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 4.1e-178 628.2 341 87.7
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 7.0e-178 627.5 349 85.1
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.2e-177 626.7 391 77.7
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 1.2e-177 626.7 376 81.6
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 2.0e-177 625.9 349 84.8
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.0e-177 625.9 400 77.5
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 3.5e-177 625.2 332 88.6
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 3.5e-177 625.2 396 79.3
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 3.5e-177 625.2 398 77.1
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 3.5e-177 625.2 404 77.0
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 4.5e-177 624.8 361 82.8
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 4.5e-177 624.8 340 86.8
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 5.9e-177 624.4 401 76.8
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 5.9e-177 624.4 399 77.7
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 7.7e-177 624.0 339 87.9
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.3e-176 623.2 377 80.4
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 1.7e-176 622.9 368 81.2
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 1.7e-176 622.9 396 77.8
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 3.8e-176 621.7 345 85.2
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 3.8e-176 621.7 368 81.0
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 3.8e-176 621.7 368 81.0
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.4e-175 619.8 404 77.7
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 1.9e-175 619.4 403 76.2
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 7.2e-175 617.5 394 75.9
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 9.4e-175 617.1 341 84.5
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 1.6e-174 616.3 337 86.9
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 2.1e-174 615.9 342 83.9
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 2.7e-174 615.5 342 83.6
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.6e-174 615.1 368 81.0
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.6e-174 615.1 403 77.2
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 4.7e-174 614.8 370 80.8
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.4e-173 613.2 367 81.7
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 1.4e-173 613.2 340 84.7
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 2.3e-173 612.5 341 85.0
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.0e-173 612.1 403 76.2
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 5.2e-173 611.3 375 79.2
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 6.7e-173 610.9 346 84.7
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 6.7e-173 610.9 384 76.8
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.1e-172 610.1 381 79.3
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 5.7e-172 607.8 397 76.1
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 2.8e-171 605.5 393 75.3
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 4.8e-171 604.7 391 76.0
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 2.4e-170 602.4 403 74.4
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 2.4e-170 602.4 308 91.2
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 3.1e-170 602.1 403 74.9
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 7.0e-170 600.9 342 84.8
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 7.0e-170 600.9 334 84.7
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 4.5e-169 598.2 347 83.0
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 5.0e-168 594.7 393 73.3
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 4.2e-167 591.7 347 83.0
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 9.4e-167 590.5 373 78.6
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 4.7e-166 588.2 302 90.4
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 2.3e-165 585.9 310 88.4
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 2.3e-165 585.9 378 78.8
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 8.8e-165 583.9 340 81.2
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.5e-164 583.2 370 77.8
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 7.5e-164 580.9 367 77.9
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 7.5e-164 580.9 328 84.5
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.2e-163 579.3 316 87.7
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 6.5e-160 567.8 346 81.8
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.1e-159 567.0 355 78.3
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 4.0e-157 558.5 338 79.3
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 4.8e-155 551.6 408 69.4
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 6.3e-155 551.2 354 73.7
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 6.3e-155 551.2 351 74.4
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 8.3e-155 550.8 498 58.8
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 5.4e-154 548.1 317 81.7
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 9.1e-154 547.4 342 76.9
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.9e-152 542.3 347 73.2
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.6e-150 536.6 334 75.4
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 2.8e-150 535.8 551 53.4
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 4.7e-150 535.0 550 54.5
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 1.0e-144 517.3 303 78.2
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 2.4e-138 496.1 243 90.5
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 1.4e-130 470.3 342 67.0
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.5e-127 460.3 368 67.1
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 5.6e-127 458.4 277 78.3
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 8.9e-125 451.1 346 62.7
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.9e-122 443.4 308 67.2
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 3.0e-112 409.5 250 80.4
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.1e-110 403.3 242 79.3
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 6.6e-104 381.7 212 83.5
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 5.6e-103 378.6 394 51.5
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 7.3e-103 378.3 318 58.8
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 1.3e-102 377.5 219 81.7
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.2e-91 340.1 214 76.2
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 2.3e-88 330.1 292 53.8
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.7e-86 322.8 204 75.0
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.1e-81 307.0 214 72.4
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 3.4e-68 263.1 320 42.8
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 4.5e-68 262.7 127 95.3
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 9.4e-66 255.0 311 44.7
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.1e-65 253.8 357 40.6
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 4.7e-65 252.7 358 41.9
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 1.0e-64 251.5 386 36.8
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 1.3e-59 234.6 322 40.4
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 1.9e-58 230.7 179 65.9
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 8.8e-56 221.9 335 39.7
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 2.0e-52 210.7 247 42.9
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.2e-47 194.9 155 63.9
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 7.5e-47 192.2 115 82.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 3.6e-33 146.7 166 54.8
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 6.8e-32 142.5 92 75.0
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 4.0e-24 116.7 56 89.3
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 6.4e-22 109.4 156 42.3
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.1e-21 108.6 62 83.9
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 1.8e-16 91.3 49 83.7
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.0e-15 87.8 83 62.7
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 2.4e-13 80.9 71 63.4
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 1.7e-11 74.7 33 87.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 1.1e-08 65.5 31 80.6
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 2.0e-07 61.2 31 83.9


User provided reference genes

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